Rroxscaffold_5G00333100

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004112
Physical Location & Seq
Reverse (-)
533687 .. 537899
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333100.1

Sequence Viewer

Length: 900 bp
ATGGTGGGATTATCTATAGGAGAGAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCACTGATGGTCGGAAAAGATTGACGCCTAGACCCATCTTTGTTGAAACTGGAAACATTTCCCAGTCAAATGGTTCAGCAAGGGTCAGGATTGGTGCCACAGAAGTCATTGCCAGTGTGAAGGTAGCACATGGGCTTAATGCTAAGCTGTTTAGTTTTGCTGAACTTGGAAGGCCGAGCGCATTGCATCCTGACAAAGGAAAAGTCTCTATAAATGTTGATTGCAGCCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCCGCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTAGGTGGTAAAAGTGGATCAGGTGCTGGAATTGACCTCTCTTCTCTGGTGATTGTGGAAGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTGTTAGTTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGAGATGAGCAACCAGAGGTTGACATAAGCGACGAGGAATTTCTGCAATTTGACACATCCAAGGTCCCTGTCATTGTTACATTAACGAAGGTAGGCAGGCACTATATTGTAGATGCCACATCAGAAGAGGAATCCCAAATGAGCTCAGCTGTTTCTATTTCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCAGGCCTAGATCCAAGCGTCATTCTTGACATGATATCTGTAGCACAAAGTGTAAGTGAGAGGCTGATAAACACATTGGATTCTCAGATAGCTGCGGCTGAAGCTGGTGAAGATGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

299

Amino Acids

31.15

Weight (kDa)

4.79

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 31 - 181 2.8e-21 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 212 - 276 1.2e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 2 cut(s) 336, 872
AclWI GGATC 3 cut(s) 394, 453, 782
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 2 cut(s) 341, 897
AcyI GRCGYC 1 cut(s) 86
AdeI CACNNNGTG 1 cut(s) 827
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 107, 458
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 7 cut(s) 208, 331, 560, 714, 719, 869, 881
AluI AGCT 7 cut(s) 208, 331, 560, 714, 719, 869, 881
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 3 cut(s) 394, 453, 782
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 3 cut(s) 233, 460, 781
ApeKI GCWGC 6 cut(s) 285, 296, 506, 518, 557, 869
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp700I GAANNNNTTC 2 cut(s) 29, 118
AspA2I CCTAGG 1 cut(s) 499
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 55, 634
AsuHPI GGTGA 3 cut(s) 335, 430, 896
AvaII GGWCC 2 cut(s) 55, 634
AvrII CCTAGG 1 cut(s) 499
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 6 cut(s) 297, 308, 493, 505, 569, 856
BccI CCATC 2 cut(s) 62, 104
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 4 cut(s) 90, 491, 500, 785
BfmI CTRYAG 3 cut(s) 15, 294, 816
BisI GCNGC 7 cut(s) 286, 297, 507, 519, 558, 870, 873
BlnI CCTAGG 1 cut(s) 499
BlpI GCTNAGC 2 cut(s) 204, 715
BlsI GCNGC 7 cut(s) 287, 298, 508, 520, 559, 871, 874
Bme18I GGWCC 2 cut(s) 55, 634
BmgT120I GGNCC 2 cut(s) 55, 634
BmiI GGNNCC 2 cut(s) 157, 636
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 5 cut(s) 256, 484, 546, 575, 673
BmuI ACTGGG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 51
Bpu1102I GCTNAGC 2 cut(s) 204, 715
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 499, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 115, 124, 174
Bse3DI GCAATG 3 cut(s) 45, 168, 242
BseDI CCNNGG 2 cut(s) 499, 630
BseGI GGATG 3 cut(s) 247, 537, 626
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 3 cut(s) 45, 168, 242
BseMII CTCAG 4 cut(s) 65, 360, 729, 875
BseNI ACTGG 3 cut(s) 115, 124, 174
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 6 cut(s) 297, 308, 493, 505, 569, 856
BsgI GTGCAG 1 cut(s) 798
BshFI GGCC 3 cut(s) 235, 462, 783
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 716
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 3 cut(s) 235, 462, 783
Bsp1286I GDGCHC 1 cut(s) 716
Bsp143I GATC 3 cut(s) 386, 445, 787
Bsp1720I GCTNAGC 2 cut(s) 204, 715
BspACI CCGC 2 cut(s) 336, 872
BspANI GGCC 3 cut(s) 235, 462, 783
BspCNI CTCAG 4 cut(s) 64, 359, 728, 874
BspLI GGNNCC 2 cut(s) 157, 636
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 3 cut(s) 394, 453, 782
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 45, 168, 242
BsrI ACTGG 3 cut(s) 115, 124, 174
BssECI CCNNGG 2 cut(s) 499, 630
BssMI GATC 3 cut(s) 386, 445, 787
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 499, 630
Bst6I CTCTTC 3 cut(s) 360, 415, 690
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 668, 781
BstDEI CTNAG 5 cut(s) 51, 204, 346, 715, 861
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 247, 537, 626
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 3 cut(s) 389, 448, 790
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 386, 445, 787
BstMWI GCNNNNNNNGC 5 cut(s) 503, 515, 534, 563, 878
BstSFI CTRYAG 3 cut(s) 15, 294, 816
BstV1I GCAGC 6 cut(s) 297, 308, 493, 505, 569, 856
BstX2I RGATCY 2 cut(s) 445, 787
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 2 cut(s) 445, 787
BsuRI GGCC 3 cut(s) 235, 462, 783
BtsCI GGATG 3 cut(s) 247, 537, 626
BtsIMutI CAGTG 2 cut(s) 63, 181
Cac8I GCNNGC 2 cut(s) 668, 781
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 55, 634
CseI GACGC 2 cut(s) 94, 784
CviAII CATG 2 cut(s) 191, 808
DdeI CTNAG 5 cut(s) 51, 204, 346, 715, 861
DpnI GATC 3 cut(s) 388, 447, 789
DpnII GATC 3 cut(s) 386, 445, 787
DraIII CACNNNGTG 1 cut(s) 827
Eam1104I CTCTTC 3 cut(s) 360, 415, 690
EarI CTCTTC 3 cut(s) 360, 415, 690
Ecl136II GAGCTC 1 cut(s) 714
Eco130I CCWWGG 2 cut(s) 499, 630
Eco147I AGGCCT 2 cut(s) 462, 783
Eco24I GRGCYC 1 cut(s) 716
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 2 cut(s) 55, 634
Eco53kI GAGCTC 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 341, 897
EcoICRI GAGCTC 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 2 cut(s) 55, 634
EcoRV GATATC 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 499, 630
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 2 cut(s) 499, 630
FaeI CATG 2 cut(s) 194, 811
FaiI YATR 9 cut(s) 17, 35, 192, 272, 596, 675, 752, 754, 809
FaqI GGGAC 1 cut(s) 620
FatI CATG 2 cut(s) 190, 807
FauNDI CATATG 1 cut(s) 752
Fnu4HI GCNGC 7 cut(s) 286, 297, 507, 519, 558, 870, 873
FokI GGATG 3 cut(s) 234, 524, 613
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 7 cut(s) 286, 297, 507, 519, 558, 870, 873
FspBI CTAG 4 cut(s) 90, 491, 500, 785
GlaI GCGC 1 cut(s) 241
GluI GCNGC 7 cut(s) 286, 297, 507, 519, 558, 870, 873
HaeIII GGCC 3 cut(s) 235, 462, 783
HgaI GACGC 2 cut(s) 94, 784
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 194, 811
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 3 cut(s) 592, 736, 762
HindII GTYRAC 3 cut(s) 592, 736, 762
HinfI GANTC 2 cut(s) 701, 857
HphI GGTGA 3 cut(s) 335, 430, 896
Hpy166II GTNNAC 3 cut(s) 592, 736, 762
Hpy188I TCNGA 4 cut(s) 75, 478, 694, 864
Hpy188III TCNNGA 5 cut(s) 53, 148, 251, 570, 803
Hpy8I GTNNAC 3 cut(s) 592, 736, 762
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 6 cut(s) 68, 175, 225, 422, 452, 652
HpyCH4V TGCA 7 cut(s) 247, 285, 296, 557, 566, 616, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 503, 515, 534, 563, 878
HpyF3I CTNAG 5 cut(s) 51, 204, 346, 715, 861
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 194, 811
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 386, 445, 787
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 6 cut(s) 297, 308, 493, 505, 569, 856
LweI GCATC 5 cut(s) 256, 484, 546, 575, 673
MaeI CTAG 4 cut(s) 90, 491, 500, 785
MaeIII GTNAC 1 cut(s) 646
MalI GATC 3 cut(s) 388, 447, 789
MboI GATC 3 cut(s) 386, 445, 787
MboII GAAGA 4 cut(s) 347, 402, 707, 899
MflI RGATCY 2 cut(s) 445, 787
MhlI GDGCHC 1 cut(s) 716
MluCI AATT 3 cut(s) 399, 608, 617
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 8 cut(s) 304, 311, 319, 416, 580, 598, 691, 831
MroXI GAANNNNTTC 2 cut(s) 29, 118
MseI TTAA 3 cut(s) 198, 513, 653
MspA1I CMGCKG 2 cut(s) 560, 719
MwoI GCNNNNNNNGC 5 cut(s) 503, 515, 534, 563, 878
NdeI CATATG 1 cut(s) 752
NdeII GATC 3 cut(s) 386, 445, 787
NlaIII CATG 2 cut(s) 194, 811
NlaIV GGNNCC 2 cut(s) 157, 636
NmeAIII GCCGAG 1 cut(s) 261
PceI AGGCCT 2 cut(s) 462, 783
PciSI GCTCTTC 1 cut(s) 360
PdmI GAANNNNTTC 2 cut(s) 29, 118
PfeI GAWTC 2 cut(s) 701, 857
PkrI GCNGC 7 cut(s) 287, 298, 508, 520, 559, 871, 874
PpuMI RGGWCCY 2 cut(s) 55, 634
Psp124BI GAGCTC 1 cut(s) 716
Psp5II RGGWCCY 2 cut(s) 55, 634
PspN4I GGNNCC 2 cut(s) 157, 636
PspPI GGNCC 2 cut(s) 55, 634
PspPPI RGGWCCY 2 cut(s) 55, 634
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 445, 787
PvuII CAGCTG 2 cut(s) 560, 719
SacI GAGCTC 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 3 cut(s) 198, 513, 653
SatI GCNGC 7 cut(s) 286, 297, 507, 519, 558, 870, 873
Sau3AI GATC 3 cut(s) 386, 445, 787
Sau96I GGNCC 2 cut(s) 55, 634
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 5 cut(s) 256, 484, 546, 575, 673
SfcI CTRYAG 3 cut(s) 15, 294, 816
SinI GGWCC 2 cut(s) 55, 634
Sse9I AATT 3 cut(s) 399, 608, 617
SseBI AGGCCT 2 cut(s) 462, 783
SsiI CCGC 2 cut(s) 336, 872
SspMI CTAG 4 cut(s) 90, 491, 500, 785
SstI GAGCTC 1 cut(s) 716
StuI AGGCCT 2 cut(s) 462, 783
StyI CCWWGG 2 cut(s) 499, 630
TasI AATT 3 cut(s) 399, 608, 617
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 2 cut(s) 701, 857
Tru1I TTAA 3 cut(s) 198, 513, 653
Tru9I TTAA 3 cut(s) 198, 513, 653
TscAI CASTG 2 cut(s) 70, 181
TseI GCWGC 6 cut(s) 285, 296, 506, 518, 557, 869
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 70, 181
VpaK11BI GGWCC 2 cut(s) 55, 634
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 608
XmaJI CCTAGG 1 cut(s) 499
XmnI GAANNNNTTC 2 cut(s) 29, 118
XspI CTAG 4 cut(s) 90, 491, 500, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.