Rw4G000580

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004112
Physical Location & Seq
Forward (+)
1220319 .. 1222943
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000580.1

Sequence Viewer

Length: 921 bp
ATGGCTTTTGAATCGATATCAAGAACTAATGGTTTCCTGCATATTGTATATTCAGAAATGGTGGGATTATCTATAGGAGAGAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCACTGATGGTCGGAAAAGATTGACGCCTAGACCCATCTTTGTTGAAACTGGAAACATTTCCCAGTCAAATGGTTCAGCAAGGGTCAGGATTGGTGCCACAGAAGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCGAGCGCATTGCATCCTGACAAAGGAAAAGTCTCTATAAATGTTGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCCGCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTAGGTGGTAAAAGTGGATCAGGTGCTGGAATTGACCTCTCTTCTCTGGCGATTGTGGAAGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTGTTAGTTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGAGATGAGCAACCAGAGGTTGACATAAGCGACGAGGAATTTCTGCAATTTGACACATCCAAGGTCCCTGTCATTGTTACATTAACGAAGGTAGGCAGGCACTATATTGTAGATGCCACATCAGAAGAGGAATCCCAAATGAGCTCAGCTGTTTCTATTTCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCAGGCCTAGATCCAAGCGTCATTCTTGACATGATATCTGTAGCACAAAGTGTAAGTGAGAGGCTGATAAACACATTGGATTCTCAGATAGCTGCGGCTGAAGCTGGTAAAGATGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

306

Amino Acids

32.02

Weight (kDa)

4.81

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 50 - 188 4.9e-24 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 219 - 283 1.3e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 2 cut(s) 357, 893
AclWI GGATC 3 cut(s) 415, 474, 803
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 362, 918
AcyI GRCGYC 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 848
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 3 cut(s) 11, 164, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 6 cut(s) 352, 581, 735, 740, 890, 902
AluI AGCT 6 cut(s) 352, 581, 735, 740, 890, 902
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 3 cut(s) 415, 474, 803
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 3 cut(s) 254, 481, 802
ApeKI GCWGC 5 cut(s) 317, 527, 539, 578, 890
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
Asp700I GAANNNNTTC 2 cut(s) 86, 175
AspA2I CCTAGG 1 cut(s) 520
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 112, 655
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 2 cut(s) 112, 655
AvrII CCTAGG 1 cut(s) 520
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 737
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 5 cut(s) 329, 514, 526, 590, 877
BccI CCATC 2 cut(s) 119, 161
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 4 cut(s) 147, 512, 521, 806
BfmI CTRYAG 3 cut(s) 72, 315, 837
BisI GCNGC 6 cut(s) 318, 528, 540, 579, 891, 894
BlnI CCTAGG 1 cut(s) 520
BlpI GCTNAGC 1 cut(s) 736
BlsI GCNGC 6 cut(s) 319, 529, 541, 580, 892, 895
Bme18I GGWCC 2 cut(s) 112, 655
BmgT120I GGNCC 2 cut(s) 112, 655
BmiI GGNNCC 2 cut(s) 214, 657
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 5 cut(s) 277, 505, 567, 596, 694
BmuI ACTGGG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 736
Bsa29I ATCGAT 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 520, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 3 cut(s) 172, 181, 231
Bse3DI GCAATG 3 cut(s) 102, 225, 263
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 520, 651
BseGI GGATG 3 cut(s) 268, 558, 647
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 3 cut(s) 102, 225, 263
BseMII CTCAG 4 cut(s) 122, 381, 750, 896
BseNI ACTGG 3 cut(s) 172, 181, 231
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 5 cut(s) 329, 514, 526, 590, 877
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 3 cut(s) 256, 483, 804
BshNI GGYRCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 737
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 3 cut(s) 256, 483, 804
Bsp1286I GDGCHC 1 cut(s) 737
Bsp143I GATC 3 cut(s) 407, 466, 808
Bsp1720I GCTNAGC 1 cut(s) 736
BspACI CCGC 2 cut(s) 357, 893
BspANI GGCC 3 cut(s) 256, 483, 804
BspCNI CTCAG 4 cut(s) 121, 380, 749, 895
BspDI ATCGAT 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 214, 657
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 3 cut(s) 415, 474, 803
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 3 cut(s) 102, 225, 263
BsrI ACTGG 3 cut(s) 172, 181, 231
BssECI CCNNGG 2 cut(s) 520, 651
BssMI GATC 3 cut(s) 407, 466, 808
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 520, 651
Bst6I CTCTTC 3 cut(s) 381, 436, 711
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 689, 802
BstDEI CTNAG 4 cut(s) 108, 367, 736, 882
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 268, 558, 647
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 3 cut(s) 410, 469, 811
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 407, 466, 808
BstMWI GCNNNNNNNGC 5 cut(s) 524, 536, 555, 584, 899
BstSFI CTRYAG 3 cut(s) 72, 315, 837
BstV1I GCAGC 5 cut(s) 329, 514, 526, 590, 877
BstX2I RGATCY 2 cut(s) 466, 808
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 466, 808
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 3 cut(s) 256, 483, 804
BsuTUI ATCGAT 1 cut(s) 14
BtsCI GGATG 3 cut(s) 268, 558, 647
BtsIMutI CAGTG 2 cut(s) 120, 238
Cac8I GCNNGC 2 cut(s) 689, 802
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 112, 655
ClaI ATCGAT 1 cut(s) 14
CseI GACGC 2 cut(s) 151, 805
CviAII CATG 1 cut(s) 829
DdeI CTNAG 4 cut(s) 108, 367, 736, 882
DpnI GATC 3 cut(s) 409, 468, 810
DpnII GATC 3 cut(s) 407, 466, 808
DraIII CACNNNGTG 1 cut(s) 848
Eam1104I CTCTTC 3 cut(s) 381, 436, 711
EarI CTCTTC 3 cut(s) 381, 436, 711
Ecl136II GAGCTC 1 cut(s) 735
Eco130I CCWWGG 2 cut(s) 520, 651
Eco147I AGGCCT 2 cut(s) 483, 804
Eco24I GRGCYC 1 cut(s) 737
Eco32I GATATC 2 cut(s) 18, 834
Eco47I GGWCC 2 cut(s) 112, 655
Eco53kI GAGCTC 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 362, 918
EcoICRI GAGCTC 1 cut(s) 735
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 2 cut(s) 112, 655
EcoRV GATATC 2 cut(s) 18, 834
EcoT14I CCWWGG 2 cut(s) 520, 651
EcoT38I GRGCYC 1 cut(s) 737
ErhI CCWWGG 2 cut(s) 520, 651
FaeI CATG 1 cut(s) 832
FaqI GGGAC 1 cut(s) 641
FatI CATG 1 cut(s) 828
FauNDI CATATG 1 cut(s) 773
Fnu4HI GCNGC 6 cut(s) 318, 528, 540, 579, 891, 894
FokI GGATG 3 cut(s) 255, 545, 634
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 6 cut(s) 318, 528, 540, 579, 891, 894
FspBI CTAG 4 cut(s) 147, 512, 521, 806
GlaI GCGC 1 cut(s) 262
GluI GCNGC 6 cut(s) 318, 528, 540, 579, 891, 894
HaeIII GGCC 3 cut(s) 256, 483, 804
HgaI GACGC 2 cut(s) 151, 805
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 1 cut(s) 832
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 3 cut(s) 613, 757, 783
HindII GTYRAC 3 cut(s) 613, 757, 783
HinfI GANTC 3 cut(s) 11, 722, 878
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 613, 757, 783
Hpy188I TCNGA 5 cut(s) 55, 132, 499, 715, 885
Hpy188III TCNNGA 6 cut(s) 21, 110, 205, 272, 591, 824
Hpy8I GTNNAC 3 cut(s) 613, 757, 783
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 6 cut(s) 125, 232, 246, 443, 473, 673
HpyCH4V TGCA 8 cut(s) 40, 268, 306, 317, 578, 587, 637, 800
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 536, 555, 584, 899
HpyF3I CTNAG 4 cut(s) 108, 367, 736, 882
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 832
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 407, 466, 808
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 5 cut(s) 329, 514, 526, 590, 877
LweI GCATC 5 cut(s) 277, 505, 567, 596, 694
MaeI CTAG 4 cut(s) 147, 512, 521, 806
MaeIII GTNAC 1 cut(s) 667
MalI GATC 3 cut(s) 409, 468, 810
MboI GATC 3 cut(s) 407, 466, 808
MboII GAAGA 3 cut(s) 368, 423, 728
MflI RGATCY 2 cut(s) 466, 808
MhlI GDGCHC 1 cut(s) 737
MluCI AATT 3 cut(s) 420, 629, 638
MmeI TCCRAC 2 cut(s) 110, 335
MnlI CCTC 8 cut(s) 325, 332, 340, 437, 601, 619, 712, 852
MroXI GAANNNNTTC 2 cut(s) 86, 175
MseI TTAA 2 cut(s) 534, 674
MspA1I CMGCKG 2 cut(s) 581, 740
MwoI GCNNNNNNNGC 5 cut(s) 524, 536, 555, 584, 899
NdeI CATATG 1 cut(s) 773
NdeII GATC 3 cut(s) 407, 466, 808
NlaIII CATG 1 cut(s) 832
NlaIV GGNNCC 2 cut(s) 214, 657
NmeAIII GCCGAG 1 cut(s) 282
PceI AGGCCT 2 cut(s) 483, 804
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 2 cut(s) 86, 175
PfeI GAWTC 3 cut(s) 11, 722, 878
PkrI GCNGC 6 cut(s) 319, 529, 541, 580, 892, 895
PpuMI RGGWCCY 2 cut(s) 112, 655
Psp124BI GAGCTC 1 cut(s) 737
Psp5II RGGWCCY 2 cut(s) 112, 655
PspN4I GGNNCC 2 cut(s) 214, 657
PspPI GGNCC 2 cut(s) 112, 655
PspPPI RGGWCCY 2 cut(s) 112, 655
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 466, 808
PvuII CAGCTG 2 cut(s) 581, 740
SacI GAGCTC 1 cut(s) 737
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 2 cut(s) 534, 674
SatI GCNGC 6 cut(s) 318, 528, 540, 579, 891, 894
Sau3AI GATC 3 cut(s) 407, 466, 808
Sau96I GGNCC 2 cut(s) 112, 655
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 5 cut(s) 277, 505, 567, 596, 694
SfcI CTRYAG 3 cut(s) 72, 315, 837
SinI GGWCC 2 cut(s) 112, 655
Sse9I AATT 3 cut(s) 420, 629, 638
SseBI AGGCCT 2 cut(s) 483, 804
SsiI CCGC 2 cut(s) 357, 893
SspMI CTAG 4 cut(s) 147, 512, 521, 806
SstI GAGCTC 1 cut(s) 737
StuI AGGCCT 2 cut(s) 483, 804
StyI CCWWGG 2 cut(s) 520, 651
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 420, 629, 638
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 3 cut(s) 11, 722, 878
Tru1I TTAA 2 cut(s) 534, 674
Tru9I TTAA 2 cut(s) 534, 674
TscAI CASTG 2 cut(s) 127, 238
TseI GCWGC 5 cut(s) 317, 527, 539, 578, 890
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 2 cut(s) 127, 238
VpaK11BI GGWCC 2 cut(s) 112, 655
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 1 cut(s) 629
XmaJI CCTAGG 1 cut(s) 520
XmnI GAANNNNTTC 2 cut(s) 86, 175
XspI CTAG 4 cut(s) 147, 512, 521, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.