pycom09g04920

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0004112
Physical Location & Seq
Reverse (-)
3639954 .. 3640401
448 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04920.2

Sequence Viewer

Length: 393 bp
ATGTTCCCAAAGGCTGCTTTGAACAACATAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGCGATGGGCAACCAGAGGTTGATGTAAGCGATGCAGAATTTCTGCAATTTGACACATCTAAGGTCCCTGTCATAGTTACTTTAACAAAGGTGACAAAATTTAACAATCTCTTCTGTCCCTTAGTAGGTAAGCACTATATTGTGGATGCCACTTCAGAAGAGGAATCACAAATGAACTCAGCTGTTTCGATTTCCGTCAATAGGCAAGGGCGCATCTGCGGGTTGACCAAACGGGGCGGTGCAGGCCTAGATCCAAGCATCATTCTCGACTTGGTATCTGTGGCAAAAACAGTAAGTGAGCAGCTGATAAACACGTTGGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

131

Amino Acids

13.76

Weight (kDa)

5.01

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 303
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 104, 164
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 191, 267
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 3 cut(s) 56, 248, 370
AluI AGCT 3 cut(s) 56, 248, 370
AlwI GGATC 1 cut(s) 311
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 14, 53, 367
ApoI RAATTY 2 cut(s) 104, 164
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 65, 379
BccI CCATC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BfaI CTAG 2 cut(s) 314, 391
BisI GCNGC 3 cut(s) 15, 54, 368
BlsI GCNGC 3 cut(s) 16, 55, 369
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 6 cut(s) 42, 71, 88, 202, 288, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 267
BseGI GGATG 2 cut(s) 33, 217
BseLI CCNNNNNNNGG 2 cut(s) 191, 267
BseMII CTCAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 65, 379
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 1 cut(s) 312
BslFI GGGAC 2 cut(s) 116, 168
BslI CCNNNNNNNGG 2 cut(s) 191, 267
BsmFI GGGAC 2 cut(s) 116, 168
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 2 cut(s) 285, 303
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 311
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 182, 219
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 126, 187, 244
BstF5I GGATG 2 cut(s) 33, 217
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 59, 309
BstV1I GCAGC 2 cut(s) 65, 379
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 1 cut(s) 312
BtgZI GCGATG 2 cut(s) 84, 111
BtsCI GGATG 2 cut(s) 33, 217
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 130
CviJI RGCY 5 cut(s) 14, 56, 248, 312, 370
CviKI_1 RGCY 5 cut(s) 14, 56, 248, 312, 370
DdeI CTNAG 3 cut(s) 126, 187, 244
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 182, 219
EarI CTCTTC 2 cut(s) 182, 219
Eco147I AGGCCT 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 130
FaiI YATR 3 cut(s) 29, 140, 204
FaqI GGGAC 2 cut(s) 116, 168
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 15, 54, 368
FokI GGATG 2 cut(s) 20, 224
Fsp4HI GCNGC 3 cut(s) 15, 54, 368
FspBI CTAG 2 cut(s) 314, 391
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 15, 54, 368
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 1 cut(s) 279
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 2 cut(s) 230, 386
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 53, 62, 101, 112, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 309
HpyF3I CTNAG 3 cut(s) 126, 187, 244
HpySE526I ACGT 1 cut(s) 380
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 42, 51, 93, 147, 294
Lsp1109I GCAGC 2 cut(s) 65, 379
LweI GCATC 6 cut(s) 42, 71, 88, 202, 288, 333
MaeI CTAG 2 cut(s) 314, 391
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 2 cut(s) 142, 157
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 169, 236
MflI RGATCY 1 cut(s) 316
MluCI AATT 3 cut(s) 104, 113, 164
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 2 cut(s) 76, 220
MseI TTAA 2 cut(s) 149, 168
MspA1I CMGCKG 3 cut(s) 56, 248, 370
MwoI GCNNNNNNNGC 2 cut(s) 59, 309
NdeII GATC 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 312
PfeI GAWTC 2 cut(s) 230, 386
PkrI GCNGC 3 cut(s) 16, 55, 369
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 3 cut(s) 56, 248, 370
SaqAI TTAA 2 cut(s) 149, 168
SatI GCNGC 3 cut(s) 15, 54, 368
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 130
SetI ASST 8 cut(s) 58, 87, 132, 159, 196, 250, 372, 383
SfaNI GCATC 6 cut(s) 42, 71, 88, 202, 288, 333
SinI GGWCC 1 cut(s) 130
Sse9I AATT 3 cut(s) 104, 113, 164
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 2 cut(s) 285, 303
SspMI CTAG 2 cut(s) 314, 391
StuI AGGCCT 1 cut(s) 312
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 383
TaqI TCGA 2 cut(s) 254, 333
TasI AATT 3 cut(s) 104, 113, 164
TfiI GAWTC 2 cut(s) 230, 386
Tru1I TTAA 2 cut(s) 149, 168
Tru9I TTAA 2 cut(s) 149, 168
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 14, 53, 367
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 2 cut(s) 104, 164
XspI CTAG 2 cut(s) 314, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.