MD09G1125700.v1.1

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0004112
Physical Location & Seq
Reverse (-)
9709243 .. 9711585
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1125700.v1.1.491

Sequence Viewer

Length: 711 bp
ATGGGTGCTACAGATGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCAACTGCACTGCAACCCGACAAAGGAAAGGTCTTTATAAATGTTGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGACCTGTCAGCAGAACTCTCGGTGGCTCTTCGATGTTGCCTCTTGGGTGGTGAAAGCGGATCTGGTGCTGGAATTGATCTCTCCTCTCTGGTAGTTGTGGAAGGAAAGATCTGTTGGGATCTTTACATTGACGGCCTTGTTGTCAGTTCAGATGGGAATCTTCTAGATGCCCTAGGTGCTGCTATAAAGGCTGCTTTGAGCGATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGCGATGAGCAACTGGAGGTTGATGTAAGTGACGAGGAATTTCTGCAGTTTGACACATCTAAGGTCCCTGTCATAGTTACATTAACAAAGGTAGGTAAGCACTATATTGTGGATGCCACTTCAGAAGAGGAATCACAAATGAGCTCGGCTGTTTCTATTTCCGTCAATAGGCAGGGGCACATCTGCGGGTTGACCAAACGGGGTGGTGCAGGCCTAGATCCAAGCATCACTCTTGACATGGTATCGGTGGCAAAAACAGTAAGCGAGCAGCTGATAAACACATTGGATTCCCAGATAGCTGCTGCTGAAGCTGGTGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

237

Amino Acids

24.25

Weight (kDa)

4.27

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 1 - 119 2.8e-14 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 150 - 213 7.7e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AciI CCGC 2 cut(s) 198, 570
AclWI GGATC 3 cut(s) 208, 267, 596
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 489, 711
AfiI CCNNNNNNNGG 2 cut(s) 71, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 5 cut(s) 374, 528, 655, 683, 695
AluI AGCT 5 cut(s) 374, 528, 655, 683, 695
Alw21I GWGCWC 1 cut(s) 530
AlwI GGATC 3 cut(s) 208, 267, 596
AoxI GGCC 3 cut(s) 47, 274, 595
ApeKI GCWGC 7 cut(s) 110, 320, 332, 371, 652, 683, 686
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspA2I CCTAGG 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 142, 448
AsuHPI GGTGA 3 cut(s) 149, 203, 710
AvaII GGWCC 2 cut(s) 142, 448
AvrII CCTAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 564
BanII GRGCYC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 7 cut(s) 122, 307, 319, 383, 664, 670, 673
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BfaI CTAG 3 cut(s) 305, 314, 599
BfmI CTRYAG 3 cut(s) 9, 108, 428
BglII AGATCT 1 cut(s) 249
BisI GCNGC 7 cut(s) 111, 321, 333, 372, 653, 684, 687
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 7 cut(s) 112, 322, 334, 373, 654, 685, 688
Bme18I GGWCC 2 cut(s) 142, 448
BmgT120I GGNCC 2 cut(s) 142, 448
BmiI GGNNCC 1 cut(s) 450
BmsI GCATC 5 cut(s) 298, 360, 389, 487, 618
BpmI CTGGAG 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 552
Bse1I ACTGG 2 cut(s) 24, 402
Bse3DI GCAATG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 351, 502
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 71, 552
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 24, 402
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 7 cut(s) 122, 307, 319, 383, 664, 670, 673
BsgI GTGCAG 2 cut(s) 39, 612
BshFI GGCC 3 cut(s) 49, 276, 597
BsiHKAI GWGCWC 1 cut(s) 530
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 71, 552
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 49, 276, 597
Bsp1286I GDGCHC 2 cut(s) 530, 564
Bsp143I GATC 5 cut(s) 200, 217, 249, 259, 601
BspACI CCGC 2 cut(s) 198, 570
BspANI GGCC 3 cut(s) 49, 276, 597
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 2 cut(s) 112, 432
BspPI GGATC 3 cut(s) 208, 267, 596
BspQI GCTCTTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 2 cut(s) 24, 402
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 5 cut(s) 200, 217, 249, 259, 601
BssT1I CCWWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 2 cut(s) 174, 504
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 595, 650
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 351, 502
BstKTI GATC 5 cut(s) 203, 220, 252, 262, 604
BstMBI GATC 5 cut(s) 200, 217, 249, 259, 601
BstMWI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 692
BstSFI CTRYAG 3 cut(s) 9, 108, 428
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 7 cut(s) 122, 307, 319, 383, 664, 670, 673
BstX2I RGATCY 4 cut(s) 200, 249, 259, 601
BstYI RGATCY 4 cut(s) 200, 249, 259, 601
BsuRI GGCC 3 cut(s) 49, 276, 597
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 351, 502
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 31, 56
Cac8I GCNNGC 2 cut(s) 595, 650
Cfr13I GGNCC 2 cut(s) 142, 448
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 1 cut(s) 622
DdeI CTNAG 1 cut(s) 444
DpnI GATC 5 cut(s) 202, 219, 251, 261, 603
DpnII GATC 5 cut(s) 200, 217, 249, 259, 601
Eam1104I CTCTTC 2 cut(s) 174, 504
EarI CTCTTC 2 cut(s) 174, 504
Ecl136II GAGCTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 142, 448
Eco53kI GAGCTC 1 cut(s) 528
Eco57I CTGAAG 2 cut(s) 489, 711
EcoICRI GAGCTC 1 cut(s) 528
EcoO109I RGGNCCY 2 cut(s) 142, 448
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 625
FaiI YATR 5 cut(s) 86, 326, 458, 489, 623
FaqI GGGAC 1 cut(s) 434
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 563
Fnu4HI GCNGC 7 cut(s) 111, 321, 333, 372, 653, 684, 687
FokI GGATG 2 cut(s) 338, 509
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 7 cut(s) 111, 321, 333, 372, 653, 684, 687
FspBI CTAG 3 cut(s) 305, 314, 599
GluI GCNGC 7 cut(s) 111, 321, 333, 372, 653, 684, 687
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 3 cut(s) 49, 276, 597
Hin1II CATG 1 cut(s) 625
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 3 cut(s) 298, 515, 671
HphI GGTGA 3 cut(s) 149, 203, 710
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 2 cut(s) 292, 508
Hpy188III TCNNGA 2 cut(s) 305, 617
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 3 cut(s) 25, 39, 236
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4V TGCA 8 cut(s) 56, 61, 99, 110, 371, 380, 430, 593
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 692
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 1 cut(s) 625
Kzo9I GATC 5 cut(s) 200, 217, 249, 259, 601
LguI GCTCTTC 1 cut(s) 174
Lsp1109I GCAGC 7 cut(s) 122, 307, 319, 383, 664, 670, 673
LweI GCATC 5 cut(s) 298, 360, 389, 487, 618
MaeI CTAG 3 cut(s) 305, 314, 599
MaeIII GTNAC 2 cut(s) 413, 460
MalI GATC 5 cut(s) 202, 219, 251, 261, 603
MboI GATC 5 cut(s) 200, 217, 249, 259, 601
MboII GAAGA 3 cut(s) 161, 293, 521
MflI RGATCY 4 cut(s) 200, 249, 259, 601
MhlI GDGCHC 2 cut(s) 530, 564
MluCI AATT 2 cut(s) 213, 422
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 8 cut(s) 118, 125, 133, 191, 235, 394, 412, 505
MseI TTAA 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 374, 655
MwoI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 692
NdeII GATC 5 cut(s) 200, 217, 249, 259, 601
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 1 cut(s) 450
NmeAIII GCCGAG 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 413
PceI AGGCCT 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 298, 515, 671
PkrI GCNGC 7 cut(s) 112, 322, 334, 373, 654, 685, 688
PpuMI RGGWCCY 2 cut(s) 142, 448
PsiI TTATAA 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 530
Psp5II RGGWCCY 2 cut(s) 142, 448
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 142, 448
PspPPI RGGWCCY 2 cut(s) 142, 448
PstI CTGCAG 2 cut(s) 112, 432
PsuI RGATCY 4 cut(s) 200, 249, 259, 601
PvuII CAGCTG 2 cut(s) 374, 655
SacI GAGCTC 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 7 cut(s) 111, 321, 333, 372, 653, 684, 687
Sau3AI GATC 5 cut(s) 200, 217, 249, 259, 601
Sau96I GGNCC 2 cut(s) 142, 448
SduI GDGCHC 2 cut(s) 530, 564
SfaNI GCATC 5 cut(s) 298, 360, 389, 487, 618
SfcI CTRYAG 3 cut(s) 9, 108, 428
SinI GGWCC 2 cut(s) 142, 448
Sse9I AATT 2 cut(s) 213, 422
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 2 cut(s) 198, 570
SspMI CTAG 3 cut(s) 305, 314, 599
SstI GAGCTC 1 cut(s) 530
StuI AGGCCT 1 cut(s) 597
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 213, 422
TfiI GAWTC 3 cut(s) 298, 515, 671
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 2 cut(s) 31, 63
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 7 cut(s) 110, 320, 332, 371, 652, 683, 686
Tsp45I GTSAC 1 cut(s) 413
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 31, 63
VpaK11BI GGWCC 2 cut(s) 142, 448
XapI RAATTY 1 cut(s) 422
XbaI TCTAGA 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 3 cut(s) 305, 314, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.