Rmu_sc0003086.1_g000002

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003086.1
OG0004112
Physical Location & Seq
Forward (+)
6983 .. 8351
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003086.1_g000002.1.cds

Sequence Viewer

Length: 642 bp
atgacccaggcctgtactcttcttgtaaagctgttgcttgtttcatttttacagggtagagggagtgaggagctgtccgcagaactctcagttgctcttcagcgttgtctattaggtggtaaaagtggatcaggtgctggaattgacctctcttctctggcgattgtggaaggaaagatttgttgggatctttacattgaaggccttgttgttagttcagacggaaatctactagatgccctaggtgctgctattaaggctgctttgagcaatacaggcatcccaagagtaaatgttgcagctggtgcatcaggagatgagcaaccagaggttgacataagcgacgaggaatttctgcaatttgacacatccaaggtccctgtcattgttacattaacgaaggtaggcaggcactatattgtagatgccacatcagaagaggaatcccaaatgagctcagctgtttctatttcagtcaacaggcaagggaacatttgtgggttgacaaaaaggggtggtgcaggcctagatccaagcgtcattcttgacatgatatctgtagcacaaagtgtaagtgagaggctgataaacacattggattctcagatagctgcggctgaagctggtaaagatgagttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

213

Amino Acids

22.11

Weight (kDa)

4.4

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 614
AclWI GGATC 3 cut(s) 136, 195, 524
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 83, 639
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 1 cut(s) 16
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 6
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 7 cut(s) 31, 73, 302, 456, 461, 611, 623
AluI AGCT 7 cut(s) 31, 73, 302, 456, 461, 611, 623
Alw21I GWGCWC 1 cut(s) 458
AlwI GGATC 3 cut(s) 136, 195, 524
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 3 cut(s) 9, 202, 523
ApeKI GCWGC 4 cut(s) 248, 260, 299, 611
ApoI RAATTY 1 cut(s) 350
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 376
AvaII GGWCC 1 cut(s) 376
AvrII CCTAGG 1 cut(s) 241
BanII GRGCYC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 235, 247, 311, 598
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 3 cut(s) 233, 242, 527
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 5 cut(s) 249, 261, 300, 612, 615
BlnI CCTAGG 1 cut(s) 241
BlpI GCTNAGC 1 cut(s) 457
BlsI GCNGC 5 cut(s) 250, 262, 301, 613, 616
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 4 cut(s) 226, 288, 317, 415
Bpu1102I GCTNAGC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 6, 241, 372
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 6, 241, 372
BseGI GGATG 2 cut(s) 279, 368
BseMII CTCAG 3 cut(s) 102, 471, 617
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 4 cut(s) 235, 247, 311, 598
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 11, 204, 525
BsiHKAI GWGCWC 1 cut(s) 458
BslFI GGGAC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 11, 204, 525
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 3 cut(s) 128, 187, 529
Bsp1720I GCTNAGC 1 cut(s) 457
BspACI CCGC 2 cut(s) 78, 614
BspANI GGCC 3 cut(s) 11, 204, 525
BspCNI CTCAG 3 cut(s) 101, 470, 616
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 3 cut(s) 136, 195, 524
BspQI GCTCTTC 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 6, 241, 372
BssMI GATC 3 cut(s) 128, 187, 529
BssT1I CCWWGG 2 cut(s) 241, 372
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 4 cut(s) 24, 102, 157, 432
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 410, 523
BstDEI CTNAG 3 cut(s) 88, 457, 603
BstF5I GGATG 2 cut(s) 279, 368
BstKTI GATC 3 cut(s) 131, 190, 532
BstMBI GATC 3 cut(s) 128, 187, 529
BstMWI GCNNNNNNNGC 5 cut(s) 245, 257, 276, 305, 620
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 235, 247, 311, 598
BstX2I RGATCY 2 cut(s) 187, 529
BstYI RGATCY 2 cut(s) 187, 529
BsuRI GGCC 3 cut(s) 11, 204, 525
BtsCI GGATG 2 cut(s) 279, 368
Cac8I GCNNGC 2 cut(s) 410, 523
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 550
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 3 cut(s) 88, 457, 603
DpnI GATC 3 cut(s) 130, 189, 531
DpnII GATC 3 cut(s) 128, 187, 529
DraIII CACNNNGTG 1 cut(s) 569
Eam1104I CTCTTC 4 cut(s) 24, 102, 157, 432
EarI CTCTTC 4 cut(s) 24, 102, 157, 432
Ecl136II GAGCTC 1 cut(s) 456
Eco130I CCWWGG 2 cut(s) 241, 372
Eco147I AGGCCT 3 cut(s) 11, 204, 525
Eco24I GRGCYC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 83, 639
EcoICRI GAGCTC 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 6
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 2 cut(s) 241, 372
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 2 cut(s) 241, 372
FaeI CATG 1 cut(s) 553
FaiI YATR 3 cut(s) 338, 417, 551
FaqI GGGAC 1 cut(s) 362
FatI CATG 1 cut(s) 549
Fnu4HI GCNGC 5 cut(s) 249, 261, 300, 612, 615
FokI GGATG 2 cut(s) 266, 355
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 5 cut(s) 249, 261, 300, 612, 615
FspBI CTAG 3 cut(s) 233, 242, 527
GluI GCNGC 5 cut(s) 249, 261, 300, 612, 615
HaeIII GGCC 3 cut(s) 11, 204, 525
HgaI GACGC 1 cut(s) 526
Hin1II CATG 1 cut(s) 553
HincII GTYRAC 3 cut(s) 334, 478, 504
HindII GTYRAC 3 cut(s) 334, 478, 504
HinfI GANTC 2 cut(s) 443, 599
Hpy166II GTNNAC 3 cut(s) 334, 478, 504
Hpy188I TCNGA 3 cut(s) 220, 436, 606
Hpy188III TCNNGA 2 cut(s) 312, 545
Hpy8I GTNNAC 3 cut(s) 334, 478, 504
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 164, 194, 394
HpyCH4V TGCA 4 cut(s) 299, 308, 358, 521
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 257, 276, 305, 620
HpyF3I CTNAG 3 cut(s) 88, 457, 603
Hsp92II CATG 1 cut(s) 553
Kzo9I GATC 3 cut(s) 128, 187, 529
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 4 cut(s) 235, 247, 311, 598
LweI GCATC 4 cut(s) 226, 288, 317, 415
MaeI CTAG 3 cut(s) 233, 242, 527
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 130, 189, 531
MboI GATC 3 cut(s) 128, 187, 529
MboII GAAGA 4 cut(s) 11, 89, 144, 449
MflI RGATCY 2 cut(s) 187, 529
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 141, 350, 359
MnlI CCTC 7 cut(s) 53, 61, 158, 322, 340, 433, 573
MseI TTAA 2 cut(s) 255, 395
MspA1I CMGCKG 2 cut(s) 302, 461
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 5 cut(s) 245, 257, 276, 305, 620
NdeII GATC 3 cut(s) 128, 187, 529
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 1 cut(s) 378
PceI AGGCCT 3 cut(s) 11, 204, 525
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 443, 599
PkrI GCNGC 5 cut(s) 250, 262, 301, 613, 616
PpuMI RGGWCCY 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 2 cut(s) 187, 529
PvuII CAGCTG 2 cut(s) 302, 461
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SacI GAGCTC 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 255, 395
SatI GCNGC 5 cut(s) 249, 261, 300, 612, 615
Sau3AI GATC 3 cut(s) 128, 187, 529
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 4 cut(s) 226, 288, 317, 415
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 376
Sse9I AATT 3 cut(s) 141, 350, 359
SseBI AGGCCT 3 cut(s) 11, 204, 525
SsiI CCGC 2 cut(s) 78, 614
SspMI CTAG 3 cut(s) 233, 242, 527
SstI GAGCTC 1 cut(s) 458
StuI AGGCCT 3 cut(s) 11, 204, 525
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 241, 372
TasI AATT 3 cut(s) 141, 350, 359
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 2 cut(s) 443, 599
Tru1I TTAA 2 cut(s) 255, 395
Tru9I TTAA 2 cut(s) 255, 395
TseI GCWGC 4 cut(s) 248, 260, 299, 611
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 350
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 3 cut(s) 233, 242, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.