Prupe.3G198900_v2.0.a1

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004112
Physical Location & Seq
Forward (+)
20838552 .. 20841601
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G198900.1

Sequence Viewer

Length: 864 bp
ATGGTGGGACTATCCATAGGAGAAAAGCATTTTATACAGGGTGGCATTGCTCAGGATCTTCGTTCTGATGGCCGAAAAAGATTGACGACTCGACCCATCTATGTTGAAACTGGAGTCATTTCTCAGGCAAATGGTTCGGCAAGGGTCAGGATGGGTGCCACAGATGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCGAATGTGTTGCAACCTGACAAAGGAAAGGTCGTTGTAAATGTTGATTGCAGTCCCACTGCTGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCAGCAGAACTCTCAGTTGCTCTTCAATGTTGTCTCTTGGGTGGTAAAAGTGGATCTGGTGCTGGAATTGATCTCTCCTCTCTGGTAGTTGTGGAAGGAAAGATCTGTTGGGATCTTTACATCGACGGCCTTGTTGTTAGTTCAGATGGGAATCTGCTAGATGCCCTAGGTGCTGCTATAAAGGCTGCTTTAAGTAATACAGGCATCCCAAAAGTAAATGTTGCAGCCGGTGCATCAGGCGATGAGCAACCAGAGGTTGACGTAAGCGATGAGGAATTTCTGCAATTTGACACATCTAGGGTCCCTGTCATAGTTACATTAACAAAGGTAGGTCGGCACTATATTGTAGATGCCACTTCAGAAGAGGAATCACAAATGAGCTCGGCTGTTTCTATTTCCATCAATAGGCAAGGCCACATTTGTGGGTTGACCAAACGGGGCGGTGCCGGCCTAGATCCAAGCATCATTCTTGACATGATATCTGTGGCAAAAACAGTAAGTGAGCAGCTGATAAACACTTTGGATTCTCACATAGCTGCTGCTGAAGCTGGCGAAGAGGAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

288

Amino Acids

29.8

Weight (kDa)

4.72

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 155, 740
AciI CCGC 1 cut(s) 738
AclWI GGATC 4 cut(s) 63, 358, 417, 746
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 639, 861
AfiI CCNNNNNNNGG 2 cut(s) 221, 702
AgsI TTSAA 2 cut(s) 107, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AleI CACNNNNGTG 1 cut(s) 717
AluBI AGCT 5 cut(s) 295, 678, 805, 833, 845
AluI AGCT 5 cut(s) 295, 678, 805, 833, 845
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 4 cut(s) 63, 358, 417, 746
AoxI GGCC 5 cut(s) 70, 197, 424, 709, 745
ApeKI GCWGC 7 cut(s) 260, 470, 482, 521, 802, 833, 836
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspA2I CCTAGG 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 598
AvrII CCTAGG 1 cut(s) 463
BanI GGYRCC 2 cut(s) 155, 740
BanII GRGCYC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 7 cut(s) 247, 457, 469, 533, 814, 820, 823
BccI CCATC 5 cut(s) 62, 104, 145, 437, 704
BceAI ACGGC 1 cut(s) 439
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 190, 224
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 4 cut(s) 455, 464, 594, 749
BglII AGATCT 1 cut(s) 399
BisI GCNGC 7 cut(s) 261, 471, 483, 522, 803, 834, 837
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 7 cut(s) 262, 472, 484, 523, 804, 835, 838
Bme18I GGWCC 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 4 cut(s) 157, 599, 600, 742
BmsI GCATC 5 cut(s) 448, 510, 539, 637, 768
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 463
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 702
Bse118I RCCGGY 2 cut(s) 524, 743
Bse1I ACTGG 2 cut(s) 115, 174
Bse3DI GCAATG 2 cut(s) 45, 168
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 2 cut(s) 156, 501
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 221, 702
BseMI GCAATG 2 cut(s) 45, 168
BseMII CTCAG 3 cut(s) 65, 137, 324
BseNI ACTGG 2 cut(s) 115, 174
BseRI GAGGAG 2 cut(s) 305, 364
BseXI GCAGC 7 cut(s) 247, 457, 469, 533, 814, 820, 823
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 5 cut(s) 72, 199, 426, 711, 747
BshNI GGYRCC 2 cut(s) 155, 740
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 2 cut(s) 525, 744
BslFI GGGAC 3 cut(s) 21, 237, 584
BslI CCNNNNNNNGG 2 cut(s) 221, 702
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 3 cut(s) 21, 237, 584
BsnI GGCC 5 cut(s) 72, 199, 426, 711, 747
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 6 cut(s) 55, 350, 367, 399, 409, 751
BspACI CCGC 1 cut(s) 738
BspANI GGCC 5 cut(s) 72, 199, 426, 711, 747
BspCNI CTCAG 3 cut(s) 64, 136, 323
BspLI GGNNCC 4 cut(s) 157, 599, 600, 742
BspPI GGATC 4 cut(s) 63, 358, 417, 746
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 155, 740
BsrDI GCAATG 2 cut(s) 45, 168
BsrFI RCCGGY 2 cut(s) 524, 743
BsrI ACTGG 2 cut(s) 115, 174
BssAI RCCGGY 2 cut(s) 524, 743
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 6 cut(s) 55, 350, 367, 399, 409, 751
BssT1I CCWWGG 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 793
Bst6I CTCTTC 3 cut(s) 324, 654, 846
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 745, 847
BstDEI CTNAG 3 cut(s) 51, 123, 310
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 156, 501
BstKTI GATC 6 cut(s) 58, 353, 370, 402, 412, 754
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 6 cut(s) 55, 350, 367, 399, 409, 751
BstMWI GCNNNNNNNGC 5 cut(s) 467, 479, 527, 744, 842
BstV1I GCAGC 7 cut(s) 247, 457, 469, 533, 814, 820, 823
BstX2I RGATCY 5 cut(s) 55, 350, 399, 409, 751
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 5 cut(s) 55, 350, 399, 409, 751
BsuRI GGCC 5 cut(s) 72, 199, 426, 711, 747
BtgZI GCGATG 2 cut(s) 552, 579
BtsCI GGATG 2 cut(s) 156, 501
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 181, 255
Cac8I GCNNGC 2 cut(s) 745, 847
Cfr10I RCCGGY 2 cut(s) 524, 743
Cfr13I GGNCC 1 cut(s) 598
CviAII CATG 1 cut(s) 772
DdeI CTNAG 3 cut(s) 51, 123, 310
DpnI GATC 6 cut(s) 57, 352, 369, 401, 411, 753
DpnII GATC 6 cut(s) 55, 350, 367, 399, 409, 751
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 3 cut(s) 324, 654, 846
EarI CTCTTC 3 cut(s) 324, 654, 846
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 680
Eco32I GATATC 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 639, 861
EcoICRI GAGCTC 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 598
EcoRV GATATC 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 1 cut(s) 775
FaiI YATR 8 cut(s) 17, 35, 102, 476, 608, 639, 773, 830
FaqI GGGAC 3 cut(s) 21, 237, 584
FatI CATG 1 cut(s) 771
Fnu4HI GCNGC 7 cut(s) 261, 471, 483, 522, 803, 834, 837
FokI GGATG 2 cut(s) 163, 488
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 7 cut(s) 261, 471, 483, 522, 803, 834, 837
FspBI CTAG 4 cut(s) 455, 464, 594, 749
GluI GCNGC 7 cut(s) 261, 471, 483, 522, 803, 834, 837
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 5 cut(s) 72, 199, 426, 711, 747
HapII CCGG 2 cut(s) 525, 744
Hin1II CATG 1 cut(s) 775
HincII GTYRAC 2 cut(s) 556, 726
HindII GTYRAC 2 cut(s) 556, 726
HinfI GANTC 6 cut(s) 88, 114, 448, 665, 821, 857
HpaII CCGG 2 cut(s) 525, 744
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 556, 726
Hpy188I TCNGA 3 cut(s) 67, 442, 658
Hpy188III TCNNGA 4 cut(s) 53, 148, 767, 861
Hpy8I GTNNAC 2 cut(s) 556, 726
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 3 cut(s) 175, 189, 386
HpyCH4III ACNGT 1 cut(s) 793
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 6 cut(s) 211, 249, 263, 521, 530, 580
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 479, 527, 744, 842
HpyF3I CTNAG 3 cut(s) 51, 123, 310
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 1 cut(s) 775
KflI GGGWCCC 1 cut(s) 598
KroI GCCGGC 1 cut(s) 743
KroNI GCCGGC 1 cut(s) 745
Kzo9I GATC 6 cut(s) 55, 350, 367, 399, 409, 751
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 7 cut(s) 247, 457, 469, 533, 814, 820, 823
LweI GCATC 5 cut(s) 448, 510, 539, 637, 768
MaeI CTAG 4 cut(s) 455, 464, 594, 749
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 610
MalI GATC 6 cut(s) 57, 352, 369, 401, 411, 753
MboI GATC 6 cut(s) 55, 350, 367, 399, 409, 751
MboII GAAGA 4 cut(s) 50, 311, 671, 863
MflI RGATCY 5 cut(s) 55, 350, 399, 409, 751
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 3 cut(s) 363, 572, 581
MlyI GAGTC 2 cut(s) 82, 123
MnlI CCTC 8 cut(s) 268, 275, 283, 385, 544, 562, 655, 847
MroNI GCCGGC 1 cut(s) 743
MseI TTAA 2 cut(s) 488, 617
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 805
MspI CCGG 2 cut(s) 525, 744
MwoI GCNNNNNNNGC 5 cut(s) 467, 479, 527, 744, 842
NaeI GCCGGC 1 cut(s) 745
NdeII GATC 6 cut(s) 55, 350, 367, 399, 409, 751
NgoMIV GCCGGC 1 cut(s) 743
NlaIII CATG 1 cut(s) 775
NlaIV GGNNCC 4 cut(s) 157, 599, 600, 742
NmeAIII GCCGAG 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 324
PdiI GCCGGC 1 cut(s) 745
PfeI GAWTC 3 cut(s) 448, 665, 821
PkrI GCNGC 7 cut(s) 262, 472, 484, 523, 804, 835, 838
PleI GAGTC 2 cut(s) 82, 122
PpsI GAGTC 2 cut(s) 82, 122
PpuMI RGGWCCY 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 598
PspN4I GGNNCC 4 cut(s) 157, 599, 600, 742
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PsuI RGATCY 5 cut(s) 55, 350, 399, 409, 751
PvuII CAGCTG 1 cut(s) 805
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 488, 617
SatI GCNGC 7 cut(s) 261, 471, 483, 522, 803, 834, 837
Sau3AI GATC 6 cut(s) 55, 350, 367, 399, 409, 751
Sau96I GGNCC 1 cut(s) 598
SchI GAGTC 2 cut(s) 82, 123
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 5 cut(s) 448, 510, 539, 637, 768
SinI GGWCC 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 717
Sse9I AATT 3 cut(s) 363, 572, 581
SsiI CCGC 1 cut(s) 738
SspMI CTAG 4 cut(s) 455, 464, 594, 749
SstI GAGCTC 1 cut(s) 680
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 793
TaiI ACGT 1 cut(s) 561
TaqI TCGA 2 cut(s) 91, 420
TasI AATT 3 cut(s) 363, 572, 581
TfiI GAWTC 3 cut(s) 448, 665, 821
Tru1I TTAA 2 cut(s) 488, 617
Tru9I TTAA 2 cut(s) 488, 617
TscAI CASTG 2 cut(s) 181, 262
TseI GCWGC 7 cut(s) 260, 470, 482, 521, 802, 833, 836
TspRI CASTG 2 cut(s) 181, 262
VpaK11BI GGWCC 1 cut(s) 598
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 572
XmaJI CCTAGG 1 cut(s) 463
XspI CTAG 4 cut(s) 455, 464, 594, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.