Rorug02G0452300

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004112
Physical Location & Seq
Forward (+)
58177891 .. 58179443
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0452300.1

Sequence Viewer

Length: 492 bp
ATGCAGAAATCTCCTGTTCATCCAAAATATGAGATGGGGTTTGATGGCAGCAATCGATTTGATCCTCAGAATGACTTTTATGAGTTTTTGGAAGAAGCAAAACACTATGCATTAGAATCAGACTTTCAGACATCATCAACTTCCTATCCAGAAGAAACTGGAGAAAGAAGATCAGGGCAAGAGAAGAAGAAGAAGAAATCATGGAAGAAATTACTATTTCCATGGTTGAAAGGCGAGAAGGTGAACAAAACTAGCACAAAATCAGCAACCAAATCTCAAGTATCTGATGCAAGACGGACTAATGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCTCTGGATGGCAGGCTCCGGCGCCCCTTATCCGGGCCTATTAACAGTCTGTTCAGACCAACAATAAGAGCAGATAGTGAGGTACCCTATAAGTGTCTAGACAAGTCCGGCAGCCCTCAAGTTGTTCAAACATATGGCCCTGTGTATCTAGTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

163

Amino Acids

18.5

Weight (kDa)

9.68

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 3 cut(s) 323, 354, 415
AclWI GGATC 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 3 cut(s) 320, 365, 366
AgsI TTSAA 2 cut(s) 229, 461
AlwI GGATC 1 cut(s) 56
AoxI GGCC 2 cut(s) 368, 469
ApeKI GCWGC 2 cut(s) 48, 444
Asp718I GGTACC 1 cut(s) 415
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 311, 368, 470
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 3 cut(s) 323, 354, 415
BbvI GCAGC 2 cut(s) 60, 456
BccI CCATC 3 cut(s) 28, 38, 335
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 3 cut(s) 252, 431, 482
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 2 cut(s) 49, 445
BlsI GCNGC 2 cut(s) 50, 446
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 311, 368, 470
BmiI GGNNCC 4 cut(s) 325, 350, 356, 417
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 261, 435
BpuMI CCSGG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 365, 366
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 19, 346
BseLI CCNNNNNNNGG 3 cut(s) 320, 365, 366
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 60, 456
BshFI GGCC 2 cut(s) 370, 471
BshNI GGYRCC 3 cut(s) 323, 354, 415
BshVI ATCGAT 1 cut(s) 55
BsiSI CCGG 5 cut(s) 314, 327, 352, 366, 441
BslI CCNNNNNNNGG 3 cut(s) 320, 365, 366
BsnI GGCC 2 cut(s) 370, 471
Bsp143I GATC 2 cut(s) 61, 170
Bsp19I CCATGG 1 cut(s) 221
BspANI GGCC 2 cut(s) 370, 471
BspCNI CTCAG 1 cut(s) 79
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 325, 350, 356, 417
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 3 cut(s) 323, 354, 415
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 61, 170
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 19, 346
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 64, 173
BstMBI GATC 2 cut(s) 61, 170
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 60, 456
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 2 cut(s) 370, 471
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 2 cut(s) 19, 346
Cac8I GCNNGC 1 cut(s) 347
CfoI GCGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 311, 368, 470
ClaI ATCGAT 1 cut(s) 55
Csp6I GTAC 1 cut(s) 416
CviAII CATG 2 cut(s) 201, 222
CviJI RGCY 5 cut(s) 335, 349, 370, 447, 471
CviKI_1 RGCY 5 cut(s) 335, 349, 370, 447, 471
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 1 cut(s) 66
DinI GGCGCC 1 cut(s) 356
DpnI GATC 2 cut(s) 63, 172
DpnII GATC 2 cut(s) 61, 170
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 356
EheI GGCGCC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 204, 225
FaiI YATR 8 cut(s) 30, 81, 108, 202, 223, 423, 466, 468
FatI CATG 2 cut(s) 200, 221
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 49, 445
FokI GGATG 2 cut(s) 6, 353
Fsp4HI GCNGC 2 cut(s) 49, 445
FspBI CTAG 3 cut(s) 252, 431, 482
GlaI GCGC 1 cut(s) 356
GluI GCNGC 2 cut(s) 49, 445
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 2 cut(s) 370, 471
HapII CCGG 5 cut(s) 314, 327, 352, 366, 441
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 2 cut(s) 204, 225
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 1 cut(s) 116
HpaII CCGG 5 cut(s) 314, 327, 352, 366, 441
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 69, 121, 129, 286, 389
Hpy188III TCNNGA 3 cut(s) 149, 338, 431
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 4, 110, 290
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 2 cut(s) 204, 225
HspAI GCGC 1 cut(s) 355
KasI GGCGCC 1 cut(s) 354
KpnI GGTACC 1 cut(s) 419
Kzo9I GATC 2 cut(s) 61, 170
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 2 cut(s) 60, 456
LweI GCATC 1 cut(s) 277
MaeI CTAG 3 cut(s) 252, 431, 482
MalI GATC 2 cut(s) 63, 172
MboI GATC 2 cut(s) 61, 170
MboII GAAGA 8 cut(s) 104, 164, 180, 196, 199, 202, 205, 217
MluCI AATT 1 cut(s) 209
Mly113I GGCGCC 1 cut(s) 355
MnlI CCTC 3 cut(s) 75, 406, 459
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 1 cut(s) 375
MspI CCGG 5 cut(s) 314, 327, 352, 366, 441
MspR9I CCNGG 1 cut(s) 367
NarI GGCGCC 1 cut(s) 355
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 221
NdeI CATATG 1 cut(s) 466
NdeII GATC 2 cut(s) 61, 170
NlaIII CATG 2 cut(s) 204, 225
NlaIV GGNNCC 4 cut(s) 325, 350, 356, 417
NsiI ATGCAT 1 cut(s) 112
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 50, 446
PluTI GGCGCC 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 325, 350, 356, 417
PspPI GGNCC 3 cut(s) 311, 368, 470
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 49, 445
Sau3AI GATC 2 cut(s) 61, 170
Sau96I GGNCC 3 cut(s) 311, 368, 470
ScrFI CCNGG 1 cut(s) 367
SetI ASST 2 cut(s) 243, 417
SfaNI GCATC 1 cut(s) 277
SfoI GGCGCC 1 cut(s) 356
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 276, 450
SmoI CTYRAG 2 cut(s) 276, 450
Sse9I AATT 1 cut(s) 209
SspDI GGCGCC 1 cut(s) 354
SspMI CTAG 3 cut(s) 252, 431, 482
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 55
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseI GCWGC 2 cut(s) 48, 444
TspDTI ATGAA 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 311
XbaI TCTAGA 1 cut(s) 430
XspI CTAG 3 cut(s) 252, 431, 482
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.