Rh4CG003700

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004112
Physical Location & Seq
Reverse (-)
746729 .. 764979
18251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG003700.1

Sequence Viewer

Length: 918 bp
ATGGCTTTTGAATCAAGAACTAATGGTTTCCTGCATATTGTATATTCAGAAATGGTGGGATTATCTATAGGAGAGAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCACTGATGGTCGGAAAAGATTGTCGCCTAGACCCATCTTTGTTGAAACTGGAAACATTTCCCAGTCAAATGGTTCAGCAAGGGTCAGGATTGGTGCCACAGAAGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCGAGCGCATTGCATCCTGACAAAGGAAAAGTCTCTATAAATGTTGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCCTCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTAGGTGGTAAAAGTGGATCAGGTGCTGGAATTGACCTCTCTTCTCTGGCTATTGTGGAAGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTGTTAGTTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGAGATGAGCAACCAGAGGTTGACATAAGCGACGAGGAATTTCTGCAATTTGACACATCCAAGGTCCCTGTCATTGTTACATTAACGAAGGTAGGCAGGCACTATATTGTAGATGCCACATCAGAAGAGGAATCCCAAATGAGCTTAGCTGTTTCTATTTCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCAGGCCTAGATCCAAGCGTCATTCTTGACATGATATCTGTAGCACTAAGTGTAAGTGAGAGGCTGATAAACACATTGGATTCTCAGAGAGCTGCGGCTGAAGCTGGCTGGCTCGTTACACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

305

Amino Acids

32.02

Weight (kDa)

4.92

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 48 - 186 3.1e-24 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 217 - 281 5.1e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 887
AclWI GGATC 3 cut(s) 409, 468, 797
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 2 cut(s) 356, 912
AdeI CACNNNGTG 1 cut(s) 842
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 11, 158, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 6 cut(s) 346, 575, 729, 734, 884, 896
AluI AGCT 6 cut(s) 346, 575, 729, 734, 884, 896
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 3 cut(s) 409, 468, 797
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 248, 475, 796
ApeKI GCWGC 5 cut(s) 311, 521, 533, 572, 884
ApoI RAATTY 1 cut(s) 623
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp700I GAANNNNTTC 2 cut(s) 80, 169
AspA2I CCTAGG 1 cut(s) 514
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 106, 649
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 106, 649
AvrII CCTAGG 1 cut(s) 514
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 5 cut(s) 323, 508, 520, 584, 871
BccI CCATC 2 cut(s) 113, 155
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 4 cut(s) 141, 506, 515, 800
BfmI CTRYAG 3 cut(s) 66, 309, 831
BisI GCNGC 6 cut(s) 312, 522, 534, 573, 885, 888
BlnI CCTAGG 1 cut(s) 514
BlpI GCTNAGC 1 cut(s) 730
BlsI GCNGC 6 cut(s) 313, 523, 535, 574, 886, 889
Bme18I GGWCC 2 cut(s) 106, 649
BmgT120I GGNCC 2 cut(s) 106, 649
BmiI GGNNCC 2 cut(s) 208, 651
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 5 cut(s) 271, 499, 561, 590, 688
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 730
BsaJI CCNNGG 2 cut(s) 514, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 166, 175, 225
Bse3DI GCAATG 3 cut(s) 96, 219, 257
BseDI CCNNGG 2 cut(s) 514, 645
BseGI GGATG 3 cut(s) 262, 552, 641
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 3 cut(s) 96, 219, 257
BseMII CTCAG 4 cut(s) 116, 366, 375, 890
BseNI ACTGG 3 cut(s) 166, 175, 225
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 5 cut(s) 323, 508, 520, 584, 871
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 3 cut(s) 250, 477, 798
BshNI GGYRCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 3 cut(s) 250, 477, 798
Bsp143I GATC 3 cut(s) 401, 460, 802
Bsp1720I GCTNAGC 1 cut(s) 730
BspACI CCGC 1 cut(s) 887
BspANI GGCC 3 cut(s) 250, 477, 798
BspCNI CTCAG 4 cut(s) 115, 365, 374, 889
BspLI GGNNCC 2 cut(s) 208, 651
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 3 cut(s) 409, 468, 797
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 3 cut(s) 96, 219, 257
BsrI ACTGG 3 cut(s) 166, 175, 225
BssECI CCNNGG 2 cut(s) 514, 645
BssMI GATC 3 cut(s) 401, 460, 802
BssT1I CCWWGG 2 cut(s) 514, 645
Bst4CI ACNGT 1 cut(s) 915
Bst6I CTCTTC 3 cut(s) 375, 430, 705
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 4 cut(s) 683, 796, 898, 902
BstDEI CTNAG 6 cut(s) 102, 352, 361, 730, 839, 876
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 262, 552, 641
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 404, 463, 805
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 3 cut(s) 401, 460, 802
BstMWI GCNNNNNNNGC 5 cut(s) 518, 530, 549, 578, 893
BstSFI CTRYAG 3 cut(s) 66, 309, 831
BstV1I GCAGC 5 cut(s) 323, 508, 520, 584, 871
BstX2I RGATCY 2 cut(s) 460, 802
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 2 cut(s) 460, 802
BsuRI GGCC 3 cut(s) 250, 477, 798
BtsCI GGATG 3 cut(s) 262, 552, 641
BtsIMutI CAGTG 2 cut(s) 114, 232
Cac8I GCNNGC 4 cut(s) 683, 796, 898, 902
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 106, 649
CseI GACGC 1 cut(s) 799
CviAII CATG 1 cut(s) 823
DdeI CTNAG 6 cut(s) 102, 352, 361, 730, 839, 876
DpnI GATC 3 cut(s) 403, 462, 804
DpnII GATC 3 cut(s) 401, 460, 802
DraIII CACNNNGTG 1 cut(s) 842
Eam1104I CTCTTC 3 cut(s) 375, 430, 705
EarI CTCTTC 3 cut(s) 375, 430, 705
Eco130I CCWWGG 2 cut(s) 514, 645
Eco147I AGGCCT 2 cut(s) 477, 798
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 2 cut(s) 106, 649
Eco57I CTGAAG 2 cut(s) 356, 912
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 106, 649
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 514, 645
ErhI CCWWGG 2 cut(s) 514, 645
FaeI CATG 1 cut(s) 826
FaqI GGGAC 1 cut(s) 635
FatI CATG 1 cut(s) 822
FauNDI CATATG 1 cut(s) 767
Fnu4HI GCNGC 6 cut(s) 312, 522, 534, 573, 885, 888
FokI GGATG 3 cut(s) 249, 539, 628
Fsp4HI GCNGC 6 cut(s) 312, 522, 534, 573, 885, 888
FspBI CTAG 4 cut(s) 141, 506, 515, 800
GlaI GCGC 1 cut(s) 256
GluI GCNGC 6 cut(s) 312, 522, 534, 573, 885, 888
HaeIII GGCC 3 cut(s) 250, 477, 798
HgaI GACGC 1 cut(s) 799
HhaI GCGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 826
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 3 cut(s) 607, 751, 777
HindII GTYRAC 3 cut(s) 607, 751, 777
HinfI GANTC 3 cut(s) 11, 716, 872
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 607, 751, 777
Hpy188I TCNGA 6 cut(s) 49, 126, 355, 493, 709, 879
Hpy188III TCNNGA 6 cut(s) 15, 104, 199, 266, 585, 818
Hpy8I GTNNAC 3 cut(s) 607, 751, 777
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 6 cut(s) 119, 226, 240, 437, 467, 667
HpyCH4III ACNGT 1 cut(s) 915
HpyCH4V TGCA 8 cut(s) 34, 262, 300, 311, 572, 581, 631, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 518, 530, 549, 578, 893
HpyF3I CTNAG 6 cut(s) 102, 352, 361, 730, 839, 876
Hsp92II CATG 1 cut(s) 826
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 3 cut(s) 401, 460, 802
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 5 cut(s) 323, 508, 520, 584, 871
LweI GCATC 5 cut(s) 271, 499, 561, 590, 688
MaeI CTAG 4 cut(s) 141, 506, 515, 800
MaeIII GTNAC 2 cut(s) 661, 907
MalI GATC 3 cut(s) 403, 462, 804
MboI GATC 3 cut(s) 401, 460, 802
MboII GAAGA 3 cut(s) 362, 417, 722
MflI RGATCY 2 cut(s) 460, 802
MluCI AATT 3 cut(s) 414, 623, 632
MmeI TCCRAC 2 cut(s) 104, 329
MnlI CCTC 9 cut(s) 319, 326, 334, 361, 431, 595, 613, 706, 846
MroXI GAANNNNTTC 2 cut(s) 80, 169
MseI TTAA 2 cut(s) 528, 668
MspA1I CMGCKG 1 cut(s) 575
MwoI GCNNNNNNNGC 5 cut(s) 518, 530, 549, 578, 893
NdeI CATATG 1 cut(s) 767
NdeII GATC 3 cut(s) 401, 460, 802
NlaIII CATG 1 cut(s) 826
NlaIV GGNNCC 2 cut(s) 208, 651
NmeAIII GCCGAG 1 cut(s) 276
PceI AGGCCT 2 cut(s) 477, 798
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 2 cut(s) 80, 169
PfeI GAWTC 3 cut(s) 11, 716, 872
PkrI GCNGC 6 cut(s) 313, 523, 535, 574, 886, 889
PpuMI RGGWCCY 2 cut(s) 106, 649
Psp5II RGGWCCY 2 cut(s) 106, 649
PspN4I GGNNCC 2 cut(s) 208, 651
PspPI GGNCC 2 cut(s) 106, 649
PspPPI RGGWCCY 2 cut(s) 106, 649
PstI CTGCAG 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 460, 802
PvuII CAGCTG 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 528, 668
SatI GCNGC 6 cut(s) 312, 522, 534, 573, 885, 888
Sau3AI GATC 3 cut(s) 401, 460, 802
Sau96I GGNCC 2 cut(s) 106, 649
SfaNI GCATC 5 cut(s) 271, 499, 561, 590, 688
SfcI CTRYAG 3 cut(s) 66, 309, 831
SinI GGWCC 2 cut(s) 106, 649
Sse9I AATT 3 cut(s) 414, 623, 632
SseBI AGGCCT 2 cut(s) 477, 798
SsiI CCGC 1 cut(s) 887
SspMI CTAG 4 cut(s) 141, 506, 515, 800
StuI AGGCCT 2 cut(s) 477, 798
StyI CCWWGG 2 cut(s) 514, 645
TaaI ACNGT 1 cut(s) 915
TasI AATT 3 cut(s) 414, 623, 632
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 3 cut(s) 11, 716, 872
Tru1I TTAA 2 cut(s) 528, 668
Tru9I TTAA 2 cut(s) 528, 668
TscAI CASTG 2 cut(s) 121, 232
TseI GCWGC 5 cut(s) 311, 521, 533, 572, 884
TspDTI ATGAA 1 cut(s) 73
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 2 cut(s) 121, 232
VpaK11BI GGWCC 2 cut(s) 106, 649
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 1 cut(s) 623
XmaJI CCTAGG 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 80, 169
XspI CTAG 4 cut(s) 141, 506, 515, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.