MD17G1115700.v1.1

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004112
Physical Location & Seq
Reverse (-)
9889800 .. 9892913
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1115700.v1.1.491

Sequence Viewer

Length: 885 bp
ATGAAGTTAATTATATCAGAAATGGTGGGACTATCCATAGGAGAAAAGCATTTTATACAGGGCGGTATTGCACAGGACATTCGTTCTGATGGTCGAAAAAGATTGACGCCTCGGCCCATCAATGTCAAAACTGGAGTAATTTCCCAGGCAAATGGTTCGGCAAGGGTCAGGATGGGGGCTACGGATGTCATTGCTAGTGTGAAGGCTGAACTTGGAAGGCCAACTGCACTGCAACCCGACAAAGGAAAGGTCTTTATAAACGTCGATTGCAGTCCAACCGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCAGCAGAACTCTCAGTGGCTCTTCGACATTGCCTCTTGGGTGGTAAAAGTGGATCTGGTGCTGGAATTGAACTCTCCTCTCTAGTAGTTGTGGAAGGAAAGATCTGTTGGGATCTTTACATTGACGGCCTTGTTGTCAGTTCAGATGGGAATCTTCTAGATGCCCTAGGTGCTGCTATAAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCTGGGGATGAGCAACCGGAGGTTGATGTAAGCGACGAGGAGTTTCTGCAATTTGACACATCTAAGGTCCCTGTCATAGTTACATTAACAAAGGTAGGTAAGCACTATATTGTGGATGCCACTTCAGAAGAGGAATCACAAATGAGCTCGGCTGTTTCAATTTCCGTCAATAGGCAAGGGCACATCTGCGGGTTGACCAAACGGGGTGGTGCAGGCCTTGATCCAAGCATCATTCTCGACATGGTATCCGTGGCAAAAACAGTTAGTGAGCAGCTGATAAACACGTTGGATTCTCAGATAGCTGCCGCTGAAGCTGGTGAAGATGAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

295

Amino Acids

30.58

Weight (kDa)

4.91

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 38 - 176 7.1e-25 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 207 - 271 6.7e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AciI CCGC 4 cut(s) 63, 279, 741, 858
AclWI GGATC 3 cut(s) 379, 438, 767
AcuI CTGAAG 2 cut(s) 660, 882
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 242, 723
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 2 cut(s) 389, 711
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 409, 441
AluBI AGCT 6 cut(s) 316, 545, 699, 826, 854, 866
AluI AGCT 6 cut(s) 316, 545, 699, 826, 854, 866
Alw21I GWGCWC 1 cut(s) 701
AlwI GGATC 3 cut(s) 379, 438, 767
AoxI GGCC 4 cut(s) 113, 218, 445, 766
ApeKI GCWGC 6 cut(s) 281, 491, 503, 542, 823, 854
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspA2I CCTAGG 1 cut(s) 484
AspS9I GGNCC 2 cut(s) 114, 619
AsuHPI GGTGA 2 cut(s) 320, 881
AvaII GGWCC 1 cut(s) 619
AvrII CCTAGG 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 6 cut(s) 293, 478, 490, 554, 835, 841
BccI CCATC 4 cut(s) 83, 125, 166, 458
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 769, 803
BciT130I CCWGG 1 cut(s) 146
BciVI GTATCC 1 cut(s) 808
BfaI CTAG 4 cut(s) 195, 401, 476, 485
BfuI GTATCC 1 cut(s) 808
BglII AGATCT 1 cut(s) 420
BisI GCNGC 7 cut(s) 282, 492, 504, 543, 824, 855, 858
BlnI CCTAGG 1 cut(s) 484
BlsI GCNGC 7 cut(s) 283, 493, 505, 544, 825, 856, 859
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 114, 619
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 5 cut(s) 469, 531, 560, 658, 789
BpmI CTGGAG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 110, 144, 484, 801
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 723
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 189, 346
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 4 cut(s) 110, 144, 484, 801
BseGI GGATG 5 cut(s) 177, 190, 522, 565, 673
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 242, 723
BseMI GCAATG 2 cut(s) 189, 346
BseMII CTCAG 2 cut(s) 345, 860
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 326, 385, 605
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 6 cut(s) 293, 478, 490, 554, 835, 841
BsgI GTGCAG 2 cut(s) 210, 783
BshFI GGCC 4 cut(s) 115, 220, 447, 768
BsiHKAI GWGCWC 1 cut(s) 701
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 2 cut(s) 42, 605
BslI CCNNNNNNNGG 2 cut(s) 242, 723
BsmFI GGGAC 2 cut(s) 42, 605
BsnI GGCC 4 cut(s) 115, 220, 447, 768
Bsp1286I GDGCHC 2 cut(s) 701, 735
Bsp143I GATC 4 cut(s) 371, 420, 430, 772
BspACI CCGC 4 cut(s) 63, 279, 741, 858
BspANI GGCC 4 cut(s) 115, 220, 447, 768
BspCNI CTCAG 2 cut(s) 344, 859
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 3 cut(s) 379, 438, 767
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 2 cut(s) 189, 346
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 4 cut(s) 110, 144, 484, 801
BssMI GATC 4 cut(s) 371, 420, 430, 772
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 2 cut(s) 345, 675
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 3 cut(s) 331, 615, 846
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 5 cut(s) 177, 190, 522, 565, 673
BstKTI GATC 4 cut(s) 374, 423, 433, 775
BstMBI GATC 4 cut(s) 371, 420, 430, 772
BstMWI GCNNNNNNNGC 5 cut(s) 488, 500, 519, 548, 863
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 6 cut(s) 293, 478, 490, 554, 835, 841
BstX2I RGATCY 3 cut(s) 371, 420, 430
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 3 cut(s) 371, 420, 430
BsuI GTATCC 1 cut(s) 808
BsuRI GGCC 4 cut(s) 115, 220, 447, 768
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 5 cut(s) 177, 190, 522, 565, 673
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 339
Cac8I GCNNGC 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 114, 619
CseI GACGC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 1 cut(s) 793
DdeI CTNAG 3 cut(s) 331, 615, 846
DpnI GATC 4 cut(s) 373, 422, 432, 774
DpnII GATC 4 cut(s) 371, 420, 430, 772
Eam1104I CTCTTC 2 cut(s) 345, 675
EarI CTCTTC 2 cut(s) 345, 675
Ecl136II GAGCTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 484
Eco147I AGGCCT 1 cut(s) 768
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 619
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 660, 882
EcoICRI GAGCTC 1 cut(s) 699
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 1 cut(s) 796
FaiI YATR 8 cut(s) 14, 38, 56, 257, 497, 629, 660, 794
FaqI GGGAC 2 cut(s) 42, 605
FatI CATG 1 cut(s) 792
FauI CCCGC 1 cut(s) 734
Fnu4HI GCNGC 7 cut(s) 282, 492, 504, 543, 824, 855, 858
FokI GGATG 5 cut(s) 184, 197, 509, 572, 680
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 7 cut(s) 282, 492, 504, 543, 824, 855, 858
FspBI CTAG 4 cut(s) 195, 401, 476, 485
GluI GCNGC 7 cut(s) 282, 492, 504, 543, 824, 855, 858
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 4 cut(s) 115, 220, 447, 768
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 796
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HinfI GANTC 4 cut(s) 469, 686, 842, 878
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 320, 881
Hpy166II GTNNAC 1 cut(s) 747
Hpy188I TCNGA 5 cut(s) 19, 88, 463, 679, 849
Hpy188III TCNNGA 3 cut(s) 169, 476, 788
Hpy8I GTNNAC 1 cut(s) 747
Hpy99I CGWCG 2 cut(s) 266, 590
HpyAV CCTTC 3 cut(s) 196, 210, 407
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 2 cut(s) 261, 836
HpyCH4V TGCA 8 cut(s) 71, 227, 232, 270, 542, 551, 601, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 500, 519, 548, 863
HpyF3I CTNAG 3 cut(s) 331, 615, 846
HpySE526I ACGT 2 cut(s) 261, 836
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 796
Kzo9I GATC 4 cut(s) 371, 420, 430, 772
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 6 cut(s) 293, 478, 490, 554, 835, 841
LweI GCATC 5 cut(s) 469, 531, 560, 658, 789
MaeI CTAG 4 cut(s) 195, 401, 476, 485
MaeII ACGT 2 cut(s) 261, 836
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 373, 422, 432, 774
MboI GATC 4 cut(s) 371, 420, 430, 772
MboII GAAGA 4 cut(s) 332, 464, 692, 884
MflI RGATCY 3 cut(s) 371, 420, 430
MhlI GDGCHC 2 cut(s) 701, 735
MluCI AATT 5 cut(s) 9, 138, 384, 602, 711
MmeI TCCRAC 2 cut(s) 299, 819
MnlI CCTC 9 cut(s) 120, 289, 296, 304, 362, 406, 565, 583, 676
MseI TTAA 2 cut(s) 8, 638
MspA1I CMGCKG 3 cut(s) 545, 826, 860
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 488, 500, 519, 548, 863
NdeII GATC 4 cut(s) 371, 420, 430, 772
NlaIII CATG 1 cut(s) 796
NlaIV GGNNCC 1 cut(s) 621
NmeAIII GCCGAG 2 cut(s) 91, 680
PceI AGGCCT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 4 cut(s) 469, 686, 842, 878
PkrI GCNGC 7 cut(s) 283, 493, 505, 544, 825, 856, 859
PpuMI RGGWCCY 1 cut(s) 619
PsiI TTATAA 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 2 cut(s) 114, 619
PspPPI RGGWCCY 1 cut(s) 619
PsuI RGATCY 3 cut(s) 371, 420, 430
PvuII CAGCTG 2 cut(s) 545, 826
SacI GAGCTC 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 8, 638
SatI GCNGC 7 cut(s) 282, 492, 504, 543, 824, 855, 858
Sau3AI GATC 4 cut(s) 371, 420, 430, 772
Sau96I GGNCC 2 cut(s) 114, 619
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 2 cut(s) 701, 735
SfaNI GCATC 5 cut(s) 469, 531, 560, 658, 789
SinI GGWCC 1 cut(s) 619
Sse9I AATT 5 cut(s) 9, 138, 384, 602, 711
SseBI AGGCCT 1 cut(s) 768
SsiI CCGC 4 cut(s) 63, 279, 741, 858
SspMI CTAG 4 cut(s) 195, 401, 476, 485
SstI GAGCTC 1 cut(s) 701
StuI AGGCCT 1 cut(s) 768
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 2 cut(s) 264, 839
TaqI TCGA 4 cut(s) 94, 264, 343, 789
TasI AATT 5 cut(s) 9, 138, 384, 602, 711
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 4 cut(s) 469, 686, 842, 878
Tru1I TTAA 2 cut(s) 8, 638
Tru9I TTAA 2 cut(s) 8, 638
TscAI CASTG 2 cut(s) 234, 339
TseI GCWGC 6 cut(s) 281, 491, 503, 542, 823, 854
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 197, 706, 790
TspRI CASTG 2 cut(s) 234, 339
VpaK11BI GGWCC 1 cut(s) 619
XbaI TCTAGA 1 cut(s) 475
XmaJI CCTAGG 1 cut(s) 484
XspI CTAG 4 cut(s) 195, 401, 476, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.