AT3G07970

Polygalacturonase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2540913 .. 2543613
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07970.1

Sequence Viewer

Length: 1320 bp
ATGTATGAAAAGATCATAATCTTATCAGTATTTCTCTTAACATTTCTTCCTTCTTGTTTCAGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAAACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCATGGTTATGCTCCTAGATCTTCTCCTCGATCTTTTAACGTCAACACTTTCGGTGCTAAAGCCAACGGGAACGACGATTCTAAGGCCTTCATGAAAGCTTGGGAAGCAGCTTGTTCGTCAACCGGAATAGTTTACATTGTGGCTCCAAAGAATAGAGATTACATGCTTAAAGCGGTTACGTTCTCTGGTCCATGTAAATCATCCTTGATTATTTTTAAGATTTACGGAAGGATTGAGGCATGGGAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCAATAACCTTCGAGTTGAAGGAGGTGGGCGCATCGACGGTAATGGACATATTTGGTGGCCAAAATCTTGCAAAATCAACCCTCAACTTCCTTGCCTGGGAGCTCCAACGGCGGTTACGTTTGTGGAGTGTAATAACTTGAGAGTAAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACGTTTCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGTCCTAACACTGATGGCATTCACGTTTCCGGAACTCAGAATATCTTAATTCAAGACTCTATCGTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACAGGCATTACATGCGGGCCTGGTCATGGAATCAGTATTGGAAGTTTGGGAGAAGATAACTCAGAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGTGTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGACATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTTGAAGCATGCCCCGAACAGAAATCCGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATACAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAACATTCCATGTCGAGGAATATCAATGCAAAACGTTAAACTGGTCGATCAAACTCAACAAGATGTATCCAAAGCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTTGA

Protein Analysis

439

Amino Acids

48.57

Weight (kDa)

8.94

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 97 - 427 1.9e-100 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AccII CGCG 1 cut(s) 1106
AccIII TCCGGA 1 cut(s) 746
AciI CCGC 5 cut(s) 350, 584, 852, 1104, 1106
AclI AACGTT 2 cut(s) 1035, 1221
AcoI YGGCCR 1 cut(s) 530
AcsI RAATTY 1 cut(s) 1172
AfaI GTAC 3 cut(s) 787, 1110, 1130
AfiI CCNNNNNNNGG 3 cut(s) 569, 863, 1202
AgsI TTSAA 7 cut(s) 169, 491, 665, 691, 770, 915, 1082
AjnI CCWGG 3 cut(s) 567, 856, 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
AluBI AGCT 7 cut(s) 66, 275, 287, 575, 1152, 1166, 1262
AluI AGCT 7 cut(s) 66, 275, 287, 575, 1152, 1166, 1262
Alw21I GWGCWC 2 cut(s) 577, 1154
Ama87I CYCGRG 1 cut(s) 1290
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 3 cut(s) 261, 530, 854
ApeKI GCWGC 3 cut(s) 63, 284, 1182
ApoI RAATTY 1 cut(s) 1172
Asp700I GAANNNNTTC 1 cut(s) 1300
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 365, 854
AsuHPI GGTGA 1 cut(s) 803
AsuII TTCGAA 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 1290
AvaII GGWCC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 532
BanII GRGCYC 2 cut(s) 577, 1154
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 577, 1154
BbvI GCAGC 3 cut(s) 75, 296, 1194
BccI CCATC 2 cut(s) 436, 725
BceAI ACGGC 1 cut(s) 597
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 3 cut(s) 569, 858, 1061
BciVI GTATCC 1 cut(s) 1264
BfaI CTAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 1264
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 64, 285, 1183
BlsI GCNGC 3 cut(s) 65, 286, 1184
Bme1390I CCNGG 3 cut(s) 569, 858, 1061
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 1290
BmgT120I GGNCC 2 cut(s) 365, 854
BmiI GGNNCC 2 cut(s) 321, 949
BmrFI CCNGG 3 cut(s) 569, 858, 1061
BmsI GCATC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 631, 1138
Bsa29I ATCGAT 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 178, 568, 1104, 1291
BsaWI WCCGGW 2 cut(s) 299, 746
Bsc4I CCNNNNNNNGG 3 cut(s) 569, 863, 1202
Bse1I ACTGG 2 cut(s) 793, 1233
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 3 cut(s) 569, 858, 1061
BseCI ATCGAT 1 cut(s) 806
BseDI CCNNGG 4 cut(s) 178, 568, 1104, 1291
BseGI GGATG 1 cut(s) 377
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 3 cut(s) 569, 863, 1202
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 2 cut(s) 767, 912
BseNI ACTGG 2 cut(s) 793, 1233
BseRI GAGGAG 2 cut(s) 192, 1296
BseXI GCAGC 3 cut(s) 75, 296, 1194
Bsh1236I CGCG 1 cut(s) 1106
Bsh1285I CGRYCG 1 cut(s) 1075
BshFI GGCC 3 cut(s) 263, 532, 856
BshVI ATCGAT 1 cut(s) 806
BsiEI CGRYCG 1 cut(s) 1075
BsiHKAI GWGCWC 2 cut(s) 577, 1154
BsiHKCI CYCGRG 1 cut(s) 1290
BsiSI CCGG 3 cut(s) 300, 710, 747
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 3 cut(s) 569, 863, 1202
BsmFI GGGAC 1 cut(s) 1159
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 3 cut(s) 263, 532, 856
BsoBI CYCGRG 1 cut(s) 1290
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 577, 1154
Bsp13I TCCGGA 1 cut(s) 746
Bsp1407I TGTACA 1 cut(s) 1128
Bsp143I GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 5 cut(s) 350, 584, 852, 1104, 1106
BspANI GGCC 3 cut(s) 263, 532, 856
BspCNI CTCAG 2 cut(s) 766, 911
BspDI ATCGAT 1 cut(s) 806
BspEI TCCGGA 1 cut(s) 746
BspFNI CGCG 1 cut(s) 1106
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 321, 949
BspT104I TTCGAA 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 1126
BsrGI TGTACA 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 793, 1233
BssECI CCNNGG 4 cut(s) 178, 568, 1104, 1291
BssMI GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 3 cut(s) 569, 858, 1061
Bst4CI ACNGT 2 cut(s) 161, 512
BstAPI GCANNNNNTGC 1 cut(s) 849
BstAUI TGTACA 1 cut(s) 1128
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 854, 1087
BstDEI CTNAG 3 cut(s) 258, 753, 898
BstDSI CCRYGG 2 cut(s) 178, 1104
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 6 cut(s) 15, 91, 197, 209, 1075, 1237
BstMBI GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
BstMCI CGRYCG 1 cut(s) 1075
BstMWI GCNNNNNNNGC 3 cut(s) 281, 581, 849
BstNI CCWGG 3 cut(s) 569, 858, 1061
BstNSI RCATGY 3 cut(s) 343, 852, 1089
BstSCI CCNGG 3 cut(s) 567, 856, 1059
BstUI CGCG 1 cut(s) 1106
BstV1I GCAGC 3 cut(s) 75, 296, 1194
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
Bsu15I ATCGAT 1 cut(s) 806
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 3 cut(s) 263, 532, 856
BsuTUI ATCGAT 1 cut(s) 806
BtgI CCRYGG 2 cut(s) 178, 1104
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 2 cut(s) 854, 1087
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 365, 854
Cfr42I CCGCGG 1 cut(s) 1107
ClaI ATCGAT 1 cut(s) 806
Csp6I GTAC 3 cut(s) 786, 1109, 1129
CviQI GTAC 3 cut(s) 786, 1109, 1129
DdeI CTNAG 3 cut(s) 258, 753, 898
DpnI GATC 6 cut(s) 14, 90, 196, 208, 1074, 1236
DpnII GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 530
Ecl136II GAGCTC 2 cut(s) 575, 1152
Eco130I CCWWGG 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 577, 1154
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 2 cut(s) 575, 1152
Eco88I CYCGRG 1 cut(s) 1290
EcoICRI GAGCTC 2 cut(s) 575, 1152
EcoRII CCWGG 3 cut(s) 567, 856, 1059
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 654
EcoT38I GRGCYC 2 cut(s) 577, 1154
ErhI CCWWGG 1 cut(s) 178
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 1 cut(s) 1159
FauI CCCGC 1 cut(s) 845
FauNDI CATATG 1 cut(s) 907
Fnu4HI GCNGC 3 cut(s) 64, 285, 1183
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 2 cut(s) 577, 1154
Fsp4HI GCNGC 3 cut(s) 64, 285, 1183
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 503
GluI GCNGC 3 cut(s) 64, 285, 1183
HaeIII GGCC 3 cut(s) 263, 532, 856
HapII CCGG 3 cut(s) 300, 710, 747
HhaI GCGC 1 cut(s) 504
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 3 cut(s) 220, 297, 928
HindII GTYRAC 3 cut(s) 220, 297, 928
HindIII AAGCTT 2 cut(s) 273, 1260
HinfI GANTC 6 cut(s) 254, 691, 773, 867, 937, 966
HpaII CCGG 3 cut(s) 300, 710, 747
HphI GGTGA 1 cut(s) 803
Hpy166II GTNNAC 4 cut(s) 220, 297, 310, 928
Hpy188I TCNGA 4 cut(s) 433, 756, 823, 901
Hpy188III TCNNGA 6 cut(s) 268, 665, 747, 770, 970, 1155
Hpy8I GTNNAC 4 cut(s) 220, 297, 310, 928
Hpy99I CGWCG 2 cut(s) 254, 512
HpyAV CCTTC 6 cut(s) 60, 274, 399, 485, 491, 676
HpyCH4III ACNGT 2 cut(s) 161, 512
HpyCH4IV ACGT 9 cut(s) 216, 356, 445, 590, 659, 678, 741, 1035, 1221
HpyCH4V TGCA 6 cut(s) 543, 652, 672, 1182, 1216, 1314
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 581, 849
HpyF3I CTNAG 3 cut(s) 258, 753, 898
HpySE526I ACGT 9 cut(s) 216, 356, 445, 590, 659, 678, 741, 1035, 1221
HspAI GCGC 1 cut(s) 502
Kpn2I TCCGGA 1 cut(s) 746
KspI CCGCGG 1 cut(s) 1107
Kzo9I GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
LmnI GCTCC 5 cut(s) 193, 325, 572, 580, 1274
Lsp1109I GCAGC 3 cut(s) 75, 296, 1194
LweI GCATC 1 cut(s) 513
MaeI CTAG 1 cut(s) 192
MaeII ACGT 9 cut(s) 216, 356, 445, 590, 659, 678, 741, 1035, 1221
MaeIII GTNAC 7 cut(s) 143, 161, 352, 586, 620, 700, 1036
MalI GATC 6 cut(s) 14, 90, 196, 208, 1074, 1236
MboI GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
MboII GAAGA 4 cut(s) 38, 93, 189, 902
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 2 cut(s) 577, 1154
MlsI TGGCCA 1 cut(s) 532
MluCI AATT 2 cut(s) 765, 1172
MluNI TGGCCA 1 cut(s) 532
MlyI GAGTC 2 cut(s) 767, 931
MmeI TCCRAC 4 cut(s) 602, 612, 801, 1263
MnlI CCTC 8 cut(s) 213, 406, 488, 564, 977, 1196, 1286, 1317
Mox20I TGGCCA 1 cut(s) 532
Mph1103I ATGCAT 1 cut(s) 654
MroI TCCGGA 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 1300
MscI TGGCCA 1 cut(s) 532
MseI TTAA 7 cut(s) 38, 75, 213, 345, 393, 764, 1224
MslI CAYNNNNRTG 5 cut(s) 84, 138, 183, 1025, 1166
Msp20I TGGCCA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 3 cut(s) 300, 710, 747
MspR9I CCNGG 3 cut(s) 569, 858, 1061
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 3 cut(s) 569, 858, 1061
MvnI CGCG 1 cut(s) 1106
MwoI GCNNNNNNNGC 3 cut(s) 281, 581, 849
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 907
NdeII GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
NlaIV GGNNCC 2 cut(s) 321, 949
NmuCI GTSAC 3 cut(s) 143, 161, 700
NsiI ATGCAT 1 cut(s) 654
NspI RCATGY 3 cut(s) 343, 852, 1089
NspV TTCGAA 1 cut(s) 465
PaeI GCATGC 1 cut(s) 1089
PagI TCATGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 587
PctI GAATGC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 1300
PfeI GAWTC 4 cut(s) 254, 691, 867, 966
PkrI GCNGC 3 cut(s) 65, 286, 1184
Ple19I CGATCG 1 cut(s) 1075
PleI GAGTC 2 cut(s) 767, 931
PpsI GAGTC 2 cut(s) 767, 931
Psp124BI GAGCTC 2 cut(s) 577, 1154
Psp1406I AACGTT 2 cut(s) 1035, 1221
Psp6I CCWGG 3 cut(s) 567, 856, 1059
PspGI CCWGG 3 cut(s) 567, 856, 1059
PspN4I GGNNCC 2 cut(s) 321, 949
PspPI GGNCC 2 cut(s) 365, 854
PsuI RGATCY 1 cut(s) 194
PvuI CGATCG 1 cut(s) 1075
RsaI GTAC 3 cut(s) 787, 1110, 1130
RsaNI GTAC 3 cut(s) 786, 1109, 1129
RseI CAYNNNNRTG 5 cut(s) 84, 138, 183, 1025, 1166
SacI GAGCTC 2 cut(s) 577, 1154
SacII CCGCGG 1 cut(s) 1107
SaqAI TTAA 7 cut(s) 38, 75, 213, 345, 393, 764, 1224
SatI GCNGC 3 cut(s) 64, 285, 1183
Sau3AI GATC 6 cut(s) 12, 88, 194, 206, 1072, 1234
Sau96I GGNCC 2 cut(s) 365, 854
SchI GAGTC 2 cut(s) 767, 931
ScrFI CCNGG 3 cut(s) 569, 858, 1061
SduI GDGCHC 2 cut(s) 577, 1154
SfaNI GCATC 1 cut(s) 513
Sfr303I CCGCGG 1 cut(s) 1107
SfuI TTCGAA 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 1107
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 5 cut(s) 84, 138, 183, 1025, 1166
SmlI CTYRAG 2 cut(s) 610, 1153
SmoI CTYRAG 2 cut(s) 610, 1153
SphI GCATGC 1 cut(s) 1089
Sse9I AATT 2 cut(s) 765, 1172
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 5 cut(s) 350, 584, 852, 1104, 1106
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 2 cut(s) 577, 1154
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 567, 856, 1059
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 161, 512
TaiI ACGT 9 cut(s) 219, 359, 448, 593, 662, 681, 744, 1038, 1224
TaqI TCGA 8 cut(s) 127, 205, 465, 484, 507, 806, 1201, 1233
TasI AATT 2 cut(s) 765, 1172
TatI WGTACW 1 cut(s) 1128
TfiI GAWTC 4 cut(s) 254, 691, 867, 966
Tru1I TTAA 7 cut(s) 38, 75, 213, 345, 393, 764, 1224
Tru9I TTAA 7 cut(s) 38, 75, 213, 345, 393, 764, 1224
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 3 cut(s) 143, 161, 700
TseI GCWGC 3 cut(s) 63, 284, 1182
Tsp45I GTSAC 3 cut(s) 143, 161, 700
TspDTI ATGAA 6 cut(s) 21, 85, 132, 256, 284, 1043
TspGWI ACGGA 2 cut(s) 417, 773
TspRI CASTG 1 cut(s) 733
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 1172
XceI RCATGY 3 cut(s) 343, 852, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XmnI GAANNNNTTC 1 cut(s) 1300
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.