Prupe.2G014800_v2.0.a1

Polygalacturonase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
1325738 .. 1329518
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G014800.1

Sequence Viewer

Length: 1362 bp
ATGAATTCACAAAGCCATTTTCTCTCGATACTTCTGATAGCTTTCTTAGCCTCTTTTTCCTTCTCTTTTAGCAGTAACGTCCCGGAGGACCCACTTGTACTTGATCATCATCACCATCAAATTAATTCTAGTGGTGTTCATGATGAATATAGAAAACCCTCCCCTACAATATCAAGGACAAGCAGGCTAGCTATTCTCAGCTGGGCAACTGCTGCTTATCATTCGGCTTCAGCAAAGAACATTGTTGTTAATGTGGATAGTTTTGGAGCTAAAGGAAATGGAGGGGATGATAGCCAGGCGTTTAGAAAAGCTTGGAAGAAGGCTTGTTCTTCTCAAAGGGGCGTTGATCTCGTGGTTCCTAAGAACGGAAACTATCACCTGAAACCAATCAATTTCTCTGGTCCTTGCAAATCTCCTATCACCCTCAAGATCTATGGAACAATCAAAGCCTCTCCCAACCGATCAGATTACAAAAATGATAGACGGCATTGGATTGTGTTTGAAAATGTGACAAACTTTAGAGTCGAAGGTGGTGGCACCATCGATGGAAATGGAAGGATATGGTGGCAAAACTCTTGCAAGGTTAACGAATCCCTTCCTTGCACGATCGCACCAAATGCCATGACTTTCTTCGGGTGCATCAACTTGCAAGTTGACAATATAAGGTTCCAAAATCCCCAAAAAATGCATCTTTCGTTTCACGAATGTGTGAATGTGAAGGCTTCGAATCTCATAGTAACTGCACCAGAGGATAGCCCCAACACAGATGGAATCCATGTCACAGGAACACAAAATATTCAGATAAAGAACTGTCTTATTAGGACAGGGGATGATTGTATTTCAATAGTAAGTGGGTCACGAAATGTTCGAGCTACGGATATAATCTGCGGACCAGGCCATGGAATCAGCATTGGAAGCTTAGGTGCTGGGAATTCAGAAGCAGAGGTTTCAGATGTGATGGTTTCTAGAGCGAAAATGATGGGCACCACCAATGGATTAAGAATAAAGACTTGGCAGGGCGGTTCTGGATATGCCAGCAACATCGTATTCAAAAATATTATGATGTACAACGTGAGCAATCCAATAATCATAAACCAATATTACTGTGATCAGGACGAGCCATGCCAAGAACAGAAATCAGCTGTGAAAATAAACAATGTGGTGTATGACAATGTAAAAGGCACGAGTGCTTCAAAAGTGGCAGTGAAATTCGACTGCAGCAAGCGCTTTGGATGCCAAGGAATCTTGTTACGGAACGTTAACATAAAACCTCTTGGCGAAGGAACGGCCGAAGCTTCCTGTGAGAATGTTAGCGTAATCCATAGGGGGAGGGTTTCTCCAAAGTGCTCTTCAACAATTTAA

Protein Analysis

454

Amino Acids

49.45

Weight (kDa)

9.01

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 536, 983
AccB7I CCANNNNNTGG 1 cut(s) 899
AciI CCGC 2 cut(s) 888, 1020
AclI AACGTT 1 cut(s) 1257
AcoI YGGCCR 1 cut(s) 1287
AcsI RAATTY 3 cut(s) 4, 931, 1208
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 99, 1067
AfeI AGCGCT 1 cut(s) 1226
AfiI CCNNNNNNNGG 2 cut(s) 365, 899
AgsI TTSAA 5 cut(s) 503, 843, 1051, 1194, 1353
AjnI CCWGG 2 cut(s) 294, 892
AjuI GAANNNNNNNTTGG 3 cut(s) 994, 1026, 1333
AleI CACNNNNGTG 1 cut(s) 705
AluBI AGCT 9 cut(s) 41, 191, 201, 269, 311, 872, 918, 1142, 1295
AluI AGCT 9 cut(s) 41, 191, 201, 269, 311, 872, 918, 1142, 1295
Alw21I GWGCWC 1 cut(s) 1349
Aor51HI AGCGCT 1 cut(s) 1226
AoxI GGCC 2 cut(s) 895, 1287
ApeKI GCWGC 2 cut(s) 212, 1218
ApoI RAATTY 3 cut(s) 4, 931, 1208
AseI ATTAAT 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 3 cut(s) 88, 401, 890
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 3 cut(s) 104, 368, 412
AsuII TTCGAA 1 cut(s) 725
AsuNHI GCTAGC 1 cut(s) 187
AvaII GGWCC 3 cut(s) 88, 401, 890
BaeGI GKGCMC 1 cut(s) 986
BanI GGYRCC 2 cut(s) 536, 983
BauI CACGAG 2 cut(s) 350, 1183
Bbv12I GWGCWC 1 cut(s) 1349
BbvI GCAGC 2 cut(s) 199, 1230
BccI CCATC 6 cut(s) 123, 539, 548, 761, 952, 973
BceAI ACGGC 2 cut(s) 500, 1302
BciT130I CCWGG 2 cut(s) 296, 894
BclI TGATCA 2 cut(s) 103, 1108
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 3 cut(s) 129, 188, 966
BfmI CTRYAG 1 cut(s) 1216
BfoI RGCGCY 1 cut(s) 1228
BglII AGATCT 1 cut(s) 429
BisI GCNGC 2 cut(s) 213, 1219
BlsI GCNGC 2 cut(s) 214, 1220
Bme1390I CCNGG 3 cut(s) 83, 296, 894
Bme18I GGWCC 3 cut(s) 88, 401, 890
BmgT120I GGNCC 3 cut(s) 88, 401, 890
BmiI GGNNCC 5 cut(s) 90, 357, 538, 668, 985
BmrFI CCNGG 3 cut(s) 83, 296, 894
BmsI GCATC 3 cut(s) 648, 697, 1223
BmtI GCTAGC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 1321, 1353
Bpu10I CCTNAGC 1 cut(s) 919
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 898, 1237
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 899
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 2 cut(s) 296, 894
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 898, 1237
BseGI GGATG 3 cut(s) 292, 835, 1238
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 365, 899
BseMII CTCAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 986
BseX3I CGGCCG 1 cut(s) 1287
BseXI GCAGC 2 cut(s) 199, 1230
BseYI CCCAGC 2 cut(s) 201, 926
BsgI GTGCAG 1 cut(s) 726
Bsh1285I CGRYCG 2 cut(s) 609, 1290
BshFI GGCC 2 cut(s) 897, 1289
BshNI GGYRCC 2 cut(s) 536, 983
BshVI ATCGAT 1 cut(s) 543
BsiEI CGRYCG 2 cut(s) 609, 1290
BsiHKAI GWGCWC 1 cut(s) 1349
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 365, 899
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 897, 1289
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 986, 1349
Bsp1407I TGTACA 1 cut(s) 1065
Bsp143I GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
Bsp19I CCATGG 1 cut(s) 898
BspACI CCGC 2 cut(s) 888, 1020
BspANI GGCC 2 cut(s) 897, 1289
BspCNI CTCAG 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 543
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 90, 357, 538, 668, 985
BspMAI CTGCAG 1 cut(s) 1220
BspOI GCTAGC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 1354
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 536, 983
BsrGI TGTACA 1 cut(s) 1065
BssECI CCNNGG 2 cut(s) 898, 1237
BssMI GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
BssSI CACGAG 2 cut(s) 350, 1183
BssT1I CCWWGG 2 cut(s) 898, 1237
Bst2BI CACGAG 2 cut(s) 350, 1183
Bst2UI CCWGG 2 cut(s) 296, 894
Bst4CI ACNGT 2 cut(s) 812, 1106
Bst6I CTCTTC 1 cut(s) 1354
BstAPI GCANNNNNTGC 2 cut(s) 212, 617
BstAUI TGTACA 1 cut(s) 1065
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 185, 189, 1036, 1223
BstDEI CTNAG 4 cut(s) 46, 197, 360, 919
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 3 cut(s) 292, 835, 1238
BstH2I RGCGCY 1 cut(s) 1228
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 6 cut(s) 106, 349, 432, 464, 609, 1111
BstMBI GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
BstMCI CGRYCG 2 cut(s) 609, 1290
BstMWI GCNNNNNNNGC 7 cut(s) 47, 212, 617, 894, 915, 1224, 1233
BstNI CCWGG 2 cut(s) 296, 894
BstSCI CCNGG 3 cut(s) 81, 294, 892
BstSFI CTRYAG 1 cut(s) 1216
BstSLI GKGCMC 1 cut(s) 986
BstV1I GCAGC 2 cut(s) 199, 1230
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BstZI CGGCCG 1 cut(s) 1287
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 2 cut(s) 897, 1289
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 898
BtsCI GGATG 3 cut(s) 292, 835, 1238
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 1 cut(s) 1209
Cac8I GCNNGC 4 cut(s) 185, 189, 1036, 1223
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 3 cut(s) 88, 401, 890
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 2 cut(s) 98, 1066
CviAII CATG 5 cut(s) 140, 622, 776, 899, 1122
CviQI GTAC 2 cut(s) 98, 1066
DdeI CTNAG 4 cut(s) 46, 197, 360, 919
DpnI GATC 6 cut(s) 105, 348, 431, 463, 608, 1110
DpnII GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
EaeI YGGCCR 1 cut(s) 1287
EagI CGGCCG 1 cut(s) 1287
Eam1104I CTCTTC 1 cut(s) 1354
EarI CTCTTC 1 cut(s) 1354
EclXI CGGCCG 1 cut(s) 1287
Eco130I CCWWGG 2 cut(s) 898, 1237
Eco47I GGWCC 3 cut(s) 88, 401, 890
Eco47III AGCGCT 1 cut(s) 1226
Eco52I CGGCCG 1 cut(s) 1287
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 88
EcoRI GAATTC 2 cut(s) 4, 931
EcoRII CCWGG 2 cut(s) 294, 892
EcoT14I CCWWGG 2 cut(s) 898, 1237
EcoT22I ATGCAT 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 898, 1237
FaeI CATG 5 cut(s) 143, 625, 779, 902, 1125
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 139, 621, 775, 898, 1121
FbaI TGATCA 2 cut(s) 103, 1108
Fnu4HI GCNGC 2 cut(s) 213, 1219
FokI GGATG 3 cut(s) 299, 842, 1245
Fsp4HI GCNGC 2 cut(s) 213, 1219
FspBI CTAG 3 cut(s) 129, 188, 966
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 2 cut(s) 213, 1219
GsaI CCCAGC 2 cut(s) 205, 930
HaeII RGCGCY 1 cut(s) 1228
HaeIII GGCC 2 cut(s) 897, 1289
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 5 cut(s) 143, 625, 779, 902, 1125
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 3 cut(s) 586, 655, 1261
HindII GTYRAC 3 cut(s) 586, 655, 1261
HindIII AAGCTT 3 cut(s) 309, 916, 1293
HinfI GANTC 6 cut(s) 522, 590, 727, 771, 903, 1242
HpaI GTTAAC 2 cut(s) 586, 1261
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 104, 368, 412
Hpy166II GTNNAC 3 cut(s) 586, 655, 1261
Hpy188I TCNGA 5 cut(s) 36, 466, 801, 937, 952
Hpy188III TCNNGA 8 cut(s) 25, 140, 427, 701, 858, 966, 1026, 1112
Hpy8I GTNNAC 3 cut(s) 586, 655, 1261
HpyAV CCTTC 7 cut(s) 70, 313, 521, 549, 605, 712, 1274
HpyCH4III ACNGT 2 cut(s) 812, 1106
HpyCH4IV ACGT 3 cut(s) 78, 1071, 1257
HpyCH4V TGCA 8 cut(s) 408, 579, 603, 639, 649, 688, 743, 1218
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 212, 617, 894, 915, 1224, 1233
HpyF3I CTNAG 4 cut(s) 46, 197, 360, 919
HpySE526I ACGT 3 cut(s) 78, 1071, 1257
Hsp92II CATG 5 cut(s) 143, 625, 779, 902, 1125
HspAI GCGC 1 cut(s) 1225
Ksp22I TGATCA 2 cut(s) 103, 1108
KspAI GTTAAC 2 cut(s) 586, 1261
Kzo9I GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
LguI GCTCTTC 1 cut(s) 1354
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 2 cut(s) 199, 1230
LweI GCATC 3 cut(s) 648, 697, 1223
MaeI CTAG 3 cut(s) 129, 188, 966
MaeII ACGT 3 cut(s) 78, 1071, 1257
MaeIII GTNAC 6 cut(s) 74, 508, 736, 778, 855, 1248
MalI GATC 6 cut(s) 105, 348, 431, 463, 608, 1110
MboI GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
MboII GAAGA 4 cut(s) 321, 328, 622, 1341
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 986, 1349
MluCI AATT 7 cut(s) 4, 120, 124, 391, 931, 1208, 1356
MlyI GAGTC 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 6 cut(s) 123, 249, 585, 998, 1260, 1360
MslI CAYNNNNRTG 1 cut(s) 705
MspA1I CMGCKG 2 cut(s) 201, 1142
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 83, 296, 894
MvaI CCWGG 2 cut(s) 296, 894
MwoI GCNNNNNNNGC 7 cut(s) 47, 212, 617, 894, 915, 1224, 1233
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 898
NdeII GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 5 cut(s) 143, 625, 779, 902, 1125
NlaIV GGNNCC 5 cut(s) 90, 357, 538, 668, 985
NmuCI GTSAC 3 cut(s) 508, 778, 855
NsiI ATGCAT 1 cut(s) 690
NspV TTCGAA 1 cut(s) 725
OliI CACNNNNGTG 1 cut(s) 705
PagI TCATGA 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 1354
PcsI WCGNNNNNNNCGW 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 5 cut(s) 590, 727, 771, 903, 1242
PflMI CCANNNNNTGG 1 cut(s) 899
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 2 cut(s) 214, 1220
Ple19I CGATCG 1 cut(s) 609
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 1257
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 294, 892
PspFI CCCAGC 2 cut(s) 201, 926
PspGI CCWGG 2 cut(s) 294, 892
PspN4I GGNNCC 5 cut(s) 90, 357, 538, 668, 985
PspPI GGNCC 3 cut(s) 88, 401, 890
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 1220
PsuI RGATCY 1 cut(s) 429
PvuI CGATCG 1 cut(s) 609
PvuII CAGCTG 2 cut(s) 201, 1142
RsaI GTAC 2 cut(s) 99, 1067
RsaNI GTAC 2 cut(s) 98, 1066
RseI CAYNNNNRTG 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 1354
SaqAI TTAA 6 cut(s) 123, 249, 585, 998, 1260, 1360
SatI GCNGC 2 cut(s) 213, 1219
Sau3AI GATC 6 cut(s) 103, 346, 429, 461, 606, 1108
Sau96I GGNCC 3 cut(s) 88, 401, 890
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 3 cut(s) 83, 296, 894
SduI GDGCHC 2 cut(s) 986, 1349
SfaNI GCATC 3 cut(s) 648, 697, 1223
SfcI CTRYAG 1 cut(s) 1216
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 3 cut(s) 88, 401, 890
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 7 cut(s) 4, 120, 124, 391, 931, 1208, 1356
SsiI CCGC 2 cut(s) 888, 1020
SspI AATATT 3 cut(s) 796, 1057, 1100
SspMI CTAG 3 cut(s) 129, 188, 966
StyD4I CCNGG 3 cut(s) 81, 294, 892
StyI CCWWGG 2 cut(s) 898, 1237
TaaI ACNGT 2 cut(s) 812, 1106
TaiI ACGT 3 cut(s) 81, 1074, 1260
TaqI TCGA 6 cut(s) 26, 525, 543, 725, 868, 1212
TasI AATT 7 cut(s) 4, 120, 124, 391, 931, 1208, 1356
TatI WGTACW 2 cut(s) 97, 1065
TfiI GAWTC 5 cut(s) 590, 727, 771, 903, 1242
Tru1I TTAA 6 cut(s) 123, 249, 585, 998, 1260, 1360
Tru9I TTAA 6 cut(s) 123, 249, 585, 998, 1260, 1360
TscAI CASTG 1 cut(s) 1209
TseFI GTSAC 3 cut(s) 508, 778, 855
TseI GCWGC 2 cut(s) 212, 1218
Tsp45I GTSAC 3 cut(s) 508, 778, 855
TspDTI ATGAA 3 cut(s) 17, 128, 159
TspGWI ACGGA 3 cut(s) 381, 890, 1267
TspRI CASTG 1 cut(s) 1209
Van91I CCANNNNNTGG 1 cut(s) 899
VpaK11BI GGWCC 3 cut(s) 88, 401, 890
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 3 cut(s) 4, 931, 1208
XbaI TCTAGA 1 cut(s) 965
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 3 cut(s) 129, 188, 966
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.