Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010715

Physical Location & Seq

Genomic Coordinates Forward (+)

1047336 .. 1051459

Gene Structure 4124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1011600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCAATTGTGTCTGTGTCAAAAAGTGAAAGTTACAATGTTTTCACAAAGCCAGTTTCTCTCAGTACTTCTCATAATATTAGCTTCGTTTCCCTTCTCTTTTAGTAGCGACCTAGGGAACCCACTAGTTGTACTTGATCTTCATCGTCACCATCGAACAAGAAGGCTTCAATCAACTTCAGCAAATAATTTTACAGTAAATGTGGATCGTTTTGGAGCAAAAGGAGATGGAGGGGATGATACCCAGGCATTTATGAAGGCTTGGGAGAAGGCTTGTTCTTCTGAAAGAGGTGTTGAGCTTGTGGTTCCTAAGGATAGGGTCTATCATCTGAAGCCAATGAATTTCTCCGGCCCTTGCAAATCTCATGTCACGCTCAAGATCTATGGAACCATCAAAGCCTCTACCAAACGATCAGATTACACGGATAGACGGCATTGGATTTTGTTTACAAATTTGAATAACTTTACAGTTGAAGGTGGTGGCACCATCAATGGCAATGGAAGGAAATGGTGGCAAAACTCATGCAAAGTTAATGAATCCCTTCCTTGCACGCTCGCACCAAATGCCGTGACTTTCTTCGGTTGCAACACTTTGGAAGTAGACAATGTGAGGTTCCGAAATGCCCAGCAAATGCATCTATCTTTTGAGTCGTGTGTGAATGTAAAAGCTTCGAATCTCATAGTGACCGCACCAGGCGATAGCCCAAACACAGATGGAATCCACGTCACAGCAACACAAAATATTCGGATAAGCAACTGTCTCATTAGAACAGGTGATGACTGTATTTCGATAGTAAGTGGGTCAAAAAATGTTCGAGCTGAGGATATAACCTGCGGACCAGGTCATGGAATTAGCATTGGAAGCTTAGGAGCTGGAAATTCACAAGCAGAGGTTTCAGATGTGGTGGTTTCTAGAGCCAAGATTACTGGCACCACTAACGGATTAAGAATAAAGACTTGGCAGGGCGGGTCTGGGAATGCAACAAACATCAGATACAAAAATGTTATGATGGCCAATGTGAGCAATCCAATTATCATAGACCAACACTATTGCGATCAGGATTCACCGTGCCAAGAACAGGATTCAGCTGTGAAAATAAGCAATGTGGTATATGAGAATGTGAAAGGCACAAGTGCTTCAAAAGTGGCAGTGAAATTTGACTGCAGCAAGCGTTTCGGATGTCAAGAAATTTTGTTAAAAGACGTAAACCTAAGACCTCTAGCCAATGGAATTGCCCAAGCTTCGTGTGAGCATGTCGATTTAAGCCATAGCGGAACAGTTTCTCCAAAATGCTCTTCGTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

436

Amino Acids

47.41

Weight (kDa)

8.84

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	92 - 421	5.5e-105	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07970
fragaria_vesca	FvH4_7g01140 FvH4_7g01140
malus_domestica	MD02G1309400.v1.1 MD07G1011600.v1.1
prunus_persica	Prupe.2G014800_v2.0.a1
pyrus_communis	pycom02g26060 pycom07g00970
rosa_chinensis	RchiOBHm_Chr1g0316321
rosa_laevigata	RLG00000030679
rosa_multiflora	Rmu_sc0002531.1_g000005 Rmu_sc0004511.1_g000005
rosa_roxburghii	Rroxscaffold_4G00331050
rosa_rugosa	Rorug01G0009700 Rorug01G0009700
rosa_samantha	Rh1AG019500 Rh1BG014600 Rh1CG017100 Rh1DG014500
rosa_wichuraiana	Rw1G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	2 cut(s)	482, 929
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	4 cut(s)	687, 834, 966, 1272
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	1011
AcsI	RAATTY	5 cut(s)	340, 451, 877, 1154, 1188
AcuI	CTGAAG	2 cut(s)	162, 350
AfaI	GTAC	2 cut(s)	66, 132
AfiI	CCNNNNNNNGG	2 cut(s)	845, 1078
AgsI	TTSAA	4 cut(s)	170, 457, 473, 1140
AhlI	ACTAGT	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	3 cut(s)	243, 691, 838
AjuI	GAANNNNNNNTTGG	3 cut(s)	940, 972, 1279
AloI	GAACNNNNNNTCC	2 cut(s)	1267, 1299
AluBI	AGCT	8 cut(s)	83, 298, 668, 818, 864, 872, 1088, 1241
AluI	AGCT	8 cut(s)	83, 298, 668, 818, 864, 872, 1088, 1241
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	349, 1011
ApeKI	GCWGC	1 cut(s)	1164
ApoI	RAATTY	5 cut(s)	340, 451, 877, 1154, 1188
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
Asp700I	GAANNNNTTC	2 cut(s)	540, 1279
AspA2I	CCTAGG	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	350, 836
AsuHPI	GGTGA	3 cut(s)	140, 785, 1056
AsuII	TTCGAA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	836
AvrII	CCTAGG	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	309
BalI	TGGCCA	1 cut(s)	1013
BanI	GGYRCC	2 cut(s)	482, 929
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
BbvCI	CCTCAGC	1 cut(s)	819
BbvI	GCAGC	1 cut(s)	1176
BccI	CCATC	6 cut(s)	159, 221, 398, 494, 707, 1003
BceAI	ACGGC	2 cut(s)	446, 551
BcgI	CGANNNNNNTGC	2 cut(s)	1156, 1190
BciT130I	CCWGG	3 cut(s)	245, 693, 840
BcoDI	GTCTC	1 cut(s)	764
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	4 cut(s)	113, 125, 912, 1220
BfmI	CTRYAG	1 cut(s)	1162
BfuAI	ACCTGC	1 cut(s)	839
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	1 cut(s)	1165
BlnI	CCTAGG	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	1166
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	245, 693, 840
Bme18I	GGWCC	1 cut(s)	836
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	350, 836
BmiI	GGNNCC	6 cut(s)	119, 306, 388, 484, 614, 931
BmrFI	CCNGG	3 cut(s)	245, 693, 840
BmsI	GCATC	1 cut(s)	643
Bpu10I	CCTNAGC	2 cut(s)	819, 865
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	112, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	1267, 1297
Bsc4I	CCNNNNNNNGG	2 cut(s)	845, 1078
Bse1I	ACTGG	2 cut(s)	52, 931
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	2 cut(s)	502, 1108
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	245, 693, 840
BseDI	CCNNGG	2 cut(s)	112, 243
BseGI	GGATG	2 cut(s)	241, 1184
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	845, 1078
BseMI	GCAATG	2 cut(s)	502, 1108
BseMII	CTCAG	2 cut(s)	75, 810
BseNI	ACTGG	2 cut(s)	52, 931
BseXI	GCAGC	1 cut(s)	1176
BseYI	CCCAGC	1 cut(s)	624
BshFI	GGCC	2 cut(s)	351, 1013
BshNI	GGYRCC	2 cut(s)	482, 929
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	845, 1078
BsmAI	GTCTC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	2 cut(s)	351, 1013
Bsp119I	TTCGAA	1 cut(s)	671
Bsp143I	GATC	5 cut(s)	136, 205, 378, 410, 1054
BspACI	CCGC	4 cut(s)	687, 834, 966, 1272
BspANI	GGCC	2 cut(s)	351, 1013
BspCNI	CTCAG	2 cut(s)	74, 811
BspLI	GGNNCC	6 cut(s)	119, 306, 388, 484, 614, 931
BspMAI	CTGCAG	1 cut(s)	1166
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	1300
BspT104I	TTCGAA	1 cut(s)	671
BspT107I	GGYRCC	2 cut(s)	482, 929
BsrDI	GCAATG	2 cut(s)	502, 1108
BsrI	ACTGG	2 cut(s)	52, 931
BssECI	CCNNGG	2 cut(s)	112, 243
BssMI	GATC	5 cut(s)	136, 205, 378, 410, 1054
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	3 cut(s)	245, 693, 840
Bst4CI	ACNGT	6 cut(s)	196, 469, 758, 782, 1068, 1279
Bst6I	CTCTTC	1 cut(s)	1300
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	3 cut(s)	551, 555, 1169
BstDEI	CTNAG	5 cut(s)	61, 309, 819, 865, 1211
BstF5I	GGATG	2 cut(s)	241, 1184
BstKTI	GATC	5 cut(s)	139, 208, 381, 413, 1057
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	5 cut(s)	136, 205, 378, 410, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 861
BstNI	CCWGG	3 cut(s)	245, 693, 840
BstNSI	RCATGY	1 cut(s)	1256
BstSCI	CCNGG	3 cut(s)	243, 691, 838
BstSFI	CTRYAG	1 cut(s)	1162
BstV1I	GCAGC	1 cut(s)	1176
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	351, 1013
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	241, 1184
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	1 cut(s)	1155
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	3 cut(s)	551, 555, 1169
Cfr13I	GGNCC	2 cut(s)	350, 836
CsiI	ACCWGGT	1 cut(s)	838
Csp6I	GTAC	2 cut(s)	65, 131
CviAII	CATG	4 cut(s)	365, 522, 845, 1253
CviQI	GTAC	2 cut(s)	65, 131
DdeI	CTNAG	5 cut(s)	61, 309, 819, 865, 1211
DpnI	GATC	5 cut(s)	138, 207, 380, 412, 1056
DpnII	GATC	5 cut(s)	136, 205, 378, 410, 1054
EaeI	YGGCCR	1 cut(s)	1011
Eam1104I	CTCTTC	1 cut(s)	1300
EarI	CTCTTC	1 cut(s)	1300
Eco130I	CCWWGG	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	162, 350
Eco81I	CCTNAGG	1 cut(s)	309
EcoRII	CCWGG	3 cut(s)	243, 691, 838
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	368, 525, 848, 1256
FatI	CATG	4 cut(s)	364, 521, 844, 1252
FauI	CCCGC	1 cut(s)	959
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	1165
FokI	GGATG	2 cut(s)	248, 1191
Fsp4HI	GCNGC	1 cut(s)	1165
FspBI	CTAG	4 cut(s)	113, 125, 912, 1220
GluI	GCNGC	1 cut(s)	1165
GsaI	CCCAGC	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	351, 1013
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	4 cut(s)	368, 525, 848, 1256
HindIII	AAGCTT	3 cut(s)	666, 862, 1239
HinfI	GANTC	6 cut(s)	536, 647, 673, 717, 1061, 1082
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	140, 785, 1056
Hpy166II	GTNNAC	3 cut(s)	447, 601, 1207
Hpy188I	TCNGA	8 cut(s)	283, 330, 415, 617, 747, 898, 992, 1178
Hpy188III	TCNNGA	4 cut(s)	376, 912, 1058, 1184
Hpy8I	GTNNAC	3 cut(s)	447, 601, 1207
HpyAV	CCTTC	7 cut(s)	103, 156, 250, 262, 467, 495, 551
HpyCH4III	ACNGT	6 cut(s)	196, 469, 758, 782, 1068, 1279
HpyCH4IV	ACGT	2 cut(s)	723, 1203
HpyCH4V	TGCA	8 cut(s)	4, 357, 525, 549, 585, 634, 980, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 861
HpyF3I	CTNAG	5 cut(s)	61, 309, 819, 865, 1211
HpySE526I	ACGT	2 cut(s)	723, 1203
Hsp92II	CATG	4 cut(s)	368, 525, 848, 1256
Kzo9I	GATC	5 cut(s)	136, 205, 378, 410, 1054
LguI	GCTCTTC	1 cut(s)	1300
LmnI	GCTCC	2 cut(s)	215, 869
Lsp1109I	GCAGC	1 cut(s)	1176
LweI	GCATC	1 cut(s)	643
MabI	ACCWGGT	1 cut(s)	838
MaeI	CTAG	4 cut(s)	113, 125, 912, 1220
MaeII	ACGT	2 cut(s)	723, 1203
MaeIII	GTNAC	6 cut(s)	31, 146, 367, 568, 682, 724
MalI	GATC	5 cut(s)	138, 207, 380, 412, 1056
MboI	GATC	5 cut(s)	136, 205, 378, 410, 1054
MboII	GAAGA	4 cut(s)	131, 270, 568, 1287
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	1013
MluNI	TGGCCA	1 cut(s)	1013
MlyI	GAGTC	1 cut(s)	656
MnlI	CCTC	7 cut(s)	224, 281, 409, 603, 814, 883, 1227
Mox20I	TGGCCA	1 cut(s)	1013
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	2 cut(s)	540, 1279
MscI	TGGCCA	1 cut(s)	1013
MseI	TTAA	6 cut(s)	531, 944, 1196, 1262, 1301, 1306
Msp20I	TGGCCA	1 cut(s)	1013
MspA1I	CMGCKG	1 cut(s)	1088
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	245, 693, 840
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	3 cut(s)	245, 693, 840
MwoI	GCNNNNNNNGC	2 cut(s)	563, 861
NdeII	GATC	5 cut(s)	136, 205, 378, 410, 1054
NlaIII	CATG	4 cut(s)	368, 525, 848, 1256
NlaIV	GGNNCC	6 cut(s)	119, 306, 388, 484, 614, 931
NmuCI	GTSAC	5 cut(s)	146, 367, 568, 682, 724
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	1256
NspV	TTCGAA	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	1300
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	2 cut(s)	540, 1279
PfeI	GAWTC	5 cut(s)	536, 673, 717, 1061, 1082
PflFI	GACNNNGTC	1 cut(s)	840
PflMI	CCANNNNNTGG	1 cut(s)	845
PkrI	GCNGC	1 cut(s)	1166
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
Psp6I	CCWGG	3 cut(s)	243, 691, 838
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	3 cut(s)	243, 691, 838
PspN4I	GGNNCC	6 cut(s)	119, 306, 388, 484, 614, 931
PspPI	GGNCC	2 cut(s)	350, 836
PstI	CTGCAG	1 cut(s)	1166
PsuI	RGATCY	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	840
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	2 cut(s)	66, 132
RsaNI	GTAC	2 cut(s)	65, 131
SapI	GCTCTTC	1 cut(s)	1300
SaqAI	TTAA	6 cut(s)	531, 944, 1196, 1262, 1301, 1306
SatI	GCNGC	1 cut(s)	1165
Sau3AI	GATC	5 cut(s)	136, 205, 378, 410, 1054
Sau96I	GGNCC	2 cut(s)	350, 836
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	245, 693, 840
SexAI	ACCWGGT	1 cut(s)	838
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	1162
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	124
SsiI	CCGC	4 cut(s)	687, 834, 966, 1272
SspI	AATATT	2 cut(s)	78, 742
SspMI	CTAG	4 cut(s)	113, 125, 912, 1220
StyD4I	CCNGG	3 cut(s)	243, 691, 838
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	6 cut(s)	196, 469, 758, 782, 1068, 1279
TaiI	ACGT	2 cut(s)	726, 1206
TaqI	TCGA	5 cut(s)	154, 671, 788, 814, 1257
TatI	WGTACW	2 cut(s)	64, 130
TfiI	GAWTC	5 cut(s)	536, 673, 717, 1061, 1082
Tru1I	TTAA	6 cut(s)	531, 944, 1196, 1262, 1301, 1306
Tru9I	TTAA	6 cut(s)	531, 944, 1196, 1262, 1301, 1306
TscAI	CASTG	1 cut(s)	1155
TseFI	GTSAC	5 cut(s)	146, 367, 568, 682, 724
TseI	GCWGC	1 cut(s)	1164
Tsp45I	GTSAC	5 cut(s)	146, 367, 568, 682, 724
TspDTI	ATGAA	4 cut(s)	131, 269, 353, 549
TspGWI	ACGGA	2 cut(s)	437, 954
TspRI	CASTG	1 cut(s)	1155
Tth111I	GACNNNGTC	1 cut(s)	840
Van91I	CCANNNNNTGG	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	5 cut(s)	340, 451, 877, 1154, 1188
XbaI	TCTAGA	1 cut(s)	911
XceI	RCATGY	1 cut(s)	1256
XmaJI	CCTAGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	2 cut(s)	540, 1279
XspI	CTAG	4 cut(s)	113, 125, 912, 1220
ZrmI	AGTACT	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.