Rmu_sc0002531.1_g000005

Polygalacturonase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002531.1
Physical Location & Seq
Reverse (-)
24813 .. 27854
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002531.1_g000005.1.cds

Sequence Viewer

Length: 1341 bp
atgcaatattcttcatctcaaatccattttttgtcactattcctccttctcatcattgtaccttcatatttttccttccctcttggccataaccataacccagaggagccacctgtacttgatcatcatcaaaaaacctatactggtcataattttttgagaccctaccctacaatattaaggacaagcaggagggagcttattacagccagtgcttcatccaaggttgtttttaatgtgcatgattttggagctcaagcaaatggaggagatgataccaaggcatttaggaacgcatggaagaaggcatgctcaaattctgaaggaataactgttgagctcgtggtccctaagaacagaaactatcacatcaaaccaattacattctctggtccttgcaaatctcaggtcaccttgaagatttatggaacgatcaaagcatcaccatttctatcggattacgaaagggacagtagccattggattatgttcgagaatttgcagaactttaaagttgaaggtgctggcactggcatcatcaatggcaatggaaggaaatggtgggagaattcttgcaaagttaacgagtcccttgctgtgactttctatcagtgcaataatttggaggtagcaaatctgaggttccagaatgcacagagaatgcatctgacgtttcagaaatgtgcgcttgtaaaagctttgaatctcattataacagcaccagggaacagtcctaacaccgatggaatccatgtcactgaaacacaagatattcgcataaacagctgccgcattaggacaggtgacgactgtatttcgatagtaagtgggtcaaggaatgttcaagctagcgatataacctgcggaccaggtcatggaatcagtattggaagcttaggagctgaaaattcagaagctcaggtttccgatgtggtagtaagtagagcgaaccttataggcaccactaatggattaagaatcaagacatggcaaggaggttctggttatgcaaaaaacatcagattcgaaaatgttctaatgcacaatgtcaccaatcccataatcatagatcaacattactgtgatcaggaaaaaccatgccaagatcaggcttcagctgtaaaagtaagcggagtggtataccaaaatgtgaaaggcacaagtgcttctaaagtggcggtaaatttcgattgcagtgagcgcttcggatgtcaagagattttggtgcaagacgtgaacatagtacctctaaacgatgaaggaattacgacagcttcttgtcagaatgttggattacgcgatagagggatagtttcaccaaaatgctcttcccaaaagtag

Protein Analysis

446

Amino Acids

49.14

Weight (kDa)

8.46

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 959
AccB7I CCANNNNNTGG 1 cut(s) 875
AccI GTMKAC 1 cut(s) 1140
AccII CGCG 1 cut(s) 1299
AciI CCGC 4 cut(s) 790, 864, 1131, 1178
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 5 cut(s) 316, 496, 568, 907, 1183
AcuI CTGAAG 2 cut(s) 342, 1098
AfaI GTAC 3 cut(s) 60, 117, 1245
AfeI AGCGCT 1 cut(s) 1202
AfiI CCNNNNNNNGG 2 cut(s) 875, 1108
AgsI TTSAA 4 cut(s) 418, 518, 703, 845
AjiI CACGTC 1 cut(s) 1234
AjnI CCWGG 2 cut(s) 721, 868
AjuI GAANNNNNNNTTGG 1 cut(s) 1312
Alw21I GWGCWC 2 cut(s) 256, 342
Alw26I GTCTC 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 1202
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 786
ApoI RAATTY 5 cut(s) 316, 496, 568, 907, 1183
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 2 cut(s) 688, 1203
AspS9I GGNCC 3 cut(s) 346, 392, 866
AsuHPI GGTGA 5 cut(s) 403, 435, 815, 1042, 1308
AsuII TTCGAA 1 cut(s) 1026
AsuNHI GCTAGC 1 cut(s) 848
AvaII GGWCC 3 cut(s) 346, 392, 866
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 1 cut(s) 959
BanII GRGCYC 2 cut(s) 256, 342
BauI CACGAG 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 256, 342
BbvI GCAGC 1 cut(s) 773
BccI CCATC 1 cut(s) 737
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 2 cut(s) 723, 870
BclI TGATCA 2 cut(s) 121, 1084
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 849
BfoI RGCGCY 1 cut(s) 1204
BfuAI ACCTGC 1 cut(s) 869
BisI GCNGC 2 cut(s) 787, 790
BlsI GCNGC 2 cut(s) 788, 791
Bme1390I CCNGG 2 cut(s) 723, 870
Bme18I GGWCC 3 cut(s) 346, 392, 866
BmgBI CACGTC 1 cut(s) 1234
BmgT120I GGNCC 3 cut(s) 346, 392, 866
BmiI GGNNCC 4 cut(s) 108, 348, 644, 961
BmrFI CCNGG 2 cut(s) 723, 870
BmsI GCATC 3 cut(s) 449, 543, 673
BmtI GCTAGC 1 cut(s) 852
Bpu10I CCTNAGC 2 cut(s) 895, 918
Bpu14I TTCGAA 1 cut(s) 1026
BpuEI CTTGAG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 222, 279, 722
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 1108
Bse1I ACTGG 3 cut(s) 148, 210, 535
Bse3DI GCAATG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 723, 870
BseDI CCNNGG 3 cut(s) 222, 279, 722
BseGI GGATG 2 cut(s) 218, 1214
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 875, 1108
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 3 cut(s) 419, 629, 932
BseNI ACTGG 3 cut(s) 148, 210, 535
BseRI GAGGAG 2 cut(s) 119, 282
BseXI GCAGC 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 1299
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 959
BsiHKAI GWGCWC 2 cut(s) 256, 342
BslFI GGGAC 3 cut(s) 332, 482, 574
BslI CCNNNNNNNGG 2 cut(s) 875, 1108
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 3 cut(s) 332, 482, 574
BsmI GAATGC 2 cut(s) 655, 666
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 154
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 2 cut(s) 256, 342
Bsp143I GATC 5 cut(s) 121, 432, 1069, 1084, 1105
BspACI CCGC 4 cut(s) 790, 864, 1131, 1178
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 3 cut(s) 418, 630, 931
BspFNI CGCG 1 cut(s) 1299
BspLI GGNNCC 4 cut(s) 108, 348, 644, 961
BspMI ACCTGC 1 cut(s) 869
BspOI GCTAGC 1 cut(s) 852
BspQI GCTCTTC 1 cut(s) 1333
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 3 cut(s) 148, 210, 535
BssECI CCNNGG 3 cut(s) 222, 279, 722
BssMI GATC 5 cut(s) 121, 432, 1069, 1084, 1105
BssNAI GTATAC 1 cut(s) 1141
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 222, 279
Bst1107I GTATAC 1 cut(s) 1141
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 723, 870
Bst4CI ACNGT 5 cut(s) 334, 473, 731, 812, 1082
Bst6I CTCTTC 1 cut(s) 1333
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 3 cut(s) 310, 526, 850
BstDEI CTNAG 5 cut(s) 351, 405, 638, 895, 918
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 2 cut(s) 218, 1214
BstFNI CGCG 1 cut(s) 1299
BstH2I RGCGCY 1 cut(s) 1204
BstHHI GCGC 2 cut(s) 688, 1203
BstKTI GATC 5 cut(s) 124, 435, 1072, 1087, 1108
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 5 cut(s) 121, 432, 1069, 1084, 1105
BstMWI GCNNNNNNNGC 2 cut(s) 783, 1200
BstNI CCWGG 2 cut(s) 723, 870
BstNSI RCATGY 1 cut(s) 312
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 721, 868
BstUI CGCG 1 cut(s) 1299
BstV1I GCAGC 1 cut(s) 773
BstZ17I GTATAC 1 cut(s) 1141
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 1234
BtsCI GGATG 2 cut(s) 218, 1214
BtsI GCAGTG 1 cut(s) 1201
BtsIMutI CAGTG 5 cut(s) 217, 528, 617, 756, 1201
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 3 cut(s) 310, 526, 850
CfoI GCGC 2 cut(s) 688, 1203
Cfr13I GGNCC 3 cut(s) 346, 392, 866
CsiI ACCWGGT 1 cut(s) 868
Csp6I GTAC 3 cut(s) 59, 116, 1244
CviAII CATG 7 cut(s) 242, 297, 309, 752, 875, 987, 1098
CviQI GTAC 3 cut(s) 59, 116, 1244
DdeI CTNAG 5 cut(s) 351, 405, 638, 895, 918
DpnI GATC 5 cut(s) 123, 434, 1071, 1086, 1107
DpnII GATC 5 cut(s) 121, 432, 1069, 1084, 1105
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 1333
EarI CTCTTC 1 cut(s) 1333
Ecl136II GAGCTC 2 cut(s) 254, 340
Eco130I CCWWGG 2 cut(s) 222, 279
Eco24I GRGCYC 2 cut(s) 256, 342
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 3 cut(s) 346, 392, 866
Eco47III AGCGCT 1 cut(s) 1202
Eco53kI GAGCTC 2 cut(s) 254, 340
Eco57I CTGAAG 2 cut(s) 342, 1098
Eco91I GGTNACC 1 cut(s) 409
EcoICRI GAGCTC 2 cut(s) 254, 340
EcoO65I GGTNACC 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 721, 868
EcoT14I CCWWGG 2 cut(s) 222, 279
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 2 cut(s) 256, 342
ErhI CCWWGG 2 cut(s) 222, 279
FaeI CATG 7 cut(s) 245, 300, 312, 755, 878, 990, 1101
FaqI GGGAC 3 cut(s) 332, 482, 574
FatI CATG 7 cut(s) 241, 296, 308, 751, 874, 986, 1097
FbaI TGATCA 2 cut(s) 121, 1084
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 2 cut(s) 787, 790
FokI GGATG 2 cut(s) 205, 1221
FriOI GRGCYC 2 cut(s) 256, 342
Fsp4HI GCNGC 2 cut(s) 787, 790
FspBI CTAG 1 cut(s) 849
GlaI GCGC 2 cut(s) 687, 1202
GluI GCNGC 2 cut(s) 787, 790
HaeII RGCGCY 1 cut(s) 1204
HaeIII GGCC 1 cut(s) 87
HhaI GCGC 2 cut(s) 688, 1203
Hin1II CATG 7 cut(s) 245, 300, 312, 755, 878, 990, 1101
Hin6I GCGC 2 cut(s) 686, 1201
HinP1I GCGC 2 cut(s) 686, 1201
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 696, 892
HinfI GANTC 6 cut(s) 587, 703, 747, 879, 978, 1023
HpaI GTTAAC 1 cut(s) 583
HphI GGTGA 5 cut(s) 403, 435, 815, 1042, 1308
Hpy166II GTNNAC 3 cut(s) 583, 1141, 1237
Hpy188III TCNNGA 5 cut(s) 493, 646, 982, 1088, 1214
Hpy8I GTNNAC 3 cut(s) 583, 1141, 1237
HpyAV CCTTC 8 cut(s) 56, 72, 85, 298, 317, 512, 546, 1253
HpyCH4III ACNGT 5 cut(s) 334, 473, 731, 812, 1082
HpyCH4IV ACGT 2 cut(s) 671, 1233
HpyF10VI GCNNNNNNNGC 2 cut(s) 783, 1200
HpyF3I CTNAG 5 cut(s) 351, 405, 638, 895, 918
HpySE526I ACGT 2 cut(s) 671, 1233
Hsp92II CATG 7 cut(s) 245, 300, 312, 755, 878, 990, 1101
HspAI GCGC 2 cut(s) 686, 1201
Ksp22I TGATCA 2 cut(s) 121, 1084
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 5 cut(s) 121, 432, 1069, 1084, 1105
LguI GCTCTTC 1 cut(s) 1333
LmnI GCTCC 4 cut(s) 106, 196, 251, 899
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 3 cut(s) 449, 543, 673
MabI ACCWGGT 1 cut(s) 868
MaeI CTAG 1 cut(s) 849
MaeII ACGT 2 cut(s) 671, 1233
MaeIII GTNAC 6 cut(s) 33, 409, 598, 754, 803, 1048
MalI GATC 5 cut(s) 123, 434, 1071, 1086, 1107
MboI GATC 5 cut(s) 121, 432, 1069, 1084, 1105
MboII GAAGA 4 cut(s) 3, 313, 430, 1320
MhlI GDGCHC 2 cut(s) 256, 342
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 9 cut(s) 151, 316, 378, 496, 568, 619, 907, 1183, 1263
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 1270
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 87
MseI TTAA 5 cut(s) 179, 234, 510, 582, 974
MslI CAYNNNNRTG 2 cut(s) 1080, 1321
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 786, 1118
MspR9I CCNGG 2 cut(s) 723, 870
Mva1269I GAATGC 2 cut(s) 655, 666
MvaI CCWGG 2 cut(s) 723, 870
MvnI CGCG 1 cut(s) 1299
MwoI GCNNNNNNNGC 2 cut(s) 783, 1200
NdeII GATC 5 cut(s) 121, 432, 1069, 1084, 1105
NheI GCTAGC 1 cut(s) 848
NlaIII CATG 7 cut(s) 245, 300, 312, 755, 878, 990, 1101
NlaIV GGNNCC 4 cut(s) 108, 348, 644, 961
NmuCI GTSAC 6 cut(s) 33, 409, 598, 754, 803, 1048
NsiI ATGCAT 1 cut(s) 666
NspI RCATGY 1 cut(s) 312
NspV TTCGAA 1 cut(s) 1026
PaeI GCATGC 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 1333
PctI GAATGC 2 cut(s) 655, 666
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 5 cut(s) 703, 747, 879, 978, 1023
PflFI GACNNNGTC 1 cut(s) 870
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 2 cut(s) 788, 791
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PsiI TTATAA 1 cut(s) 713
Psp124BI GAGCTC 2 cut(s) 256, 342
Psp6I CCWGG 2 cut(s) 721, 868
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 2 cut(s) 721, 868
PspN4I GGNNCC 4 cut(s) 108, 348, 644, 961
PspPI GGNCC 3 cut(s) 346, 392, 866
PsyI GACNNNGTC 1 cut(s) 870
PvuII CAGCTG 2 cut(s) 786, 1118
RsaI GTAC 3 cut(s) 60, 117, 1245
RsaNI GTAC 3 cut(s) 59, 116, 1244
RseI CAYNNNNRTG 2 cut(s) 1080, 1321
SacI GAGCTC 2 cut(s) 256, 342
SapI GCTCTTC 1 cut(s) 1333
SaqAI TTAA 5 cut(s) 179, 234, 510, 582, 974
SatI GCNGC 2 cut(s) 787, 790
Sau3AI GATC 5 cut(s) 121, 432, 1069, 1084, 1105
Sau96I GGNCC 3 cut(s) 346, 392, 866
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 723, 870
SduI GDGCHC 2 cut(s) 256, 342
SexAI ACCWGGT 1 cut(s) 868
SfaNI GCATC 3 cut(s) 449, 543, 673
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 3 cut(s) 346, 392, 866
SmiMI CAYNNNNRTG 2 cut(s) 1080, 1321
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SphI GCATGC 1 cut(s) 312
Sse9I AATT 9 cut(s) 151, 316, 378, 496, 568, 619, 907, 1183, 1263
SsiI CCGC 4 cut(s) 790, 864, 1131, 1178
SspI AATATT 2 cut(s) 8, 177
SspMI CTAG 1 cut(s) 849
SstI GAGCTC 2 cut(s) 256, 342
StyD4I CCNGG 2 cut(s) 721, 868
StyI CCWWGG 2 cut(s) 222, 279
TaaI ACNGT 5 cut(s) 334, 473, 731, 812, 1082
TaiI ACGT 2 cut(s) 674, 1236
TaqI TCGA 4 cut(s) 492, 818, 1026, 1188
TasI AATT 9 cut(s) 151, 316, 378, 496, 568, 619, 907, 1183, 1263
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 5 cut(s) 703, 747, 879, 978, 1023
Tru1I TTAA 5 cut(s) 179, 234, 510, 582, 974
Tru9I TTAA 5 cut(s) 179, 234, 510, 582, 974
TscAI CASTG 5 cut(s) 217, 535, 617, 763, 1201
TseFI GTSAC 6 cut(s) 33, 409, 598, 754, 803, 1048
TseI GCWGC 1 cut(s) 786
Tsp45I GTSAC 6 cut(s) 33, 409, 598, 754, 803, 1048
TspDTI ATGAA 3 cut(s) 54, 207, 1272
TspRI CASTG 5 cut(s) 217, 535, 617, 763, 1201
Tth111I GACNNNGTC 1 cut(s) 870
Van91I CCANNNNNTGG 1 cut(s) 875
VpaK11BI GGWCC 3 cut(s) 346, 392, 866
XapI RAATTY 5 cut(s) 316, 496, 568, 907, 1183
XceI RCATGY 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 1140
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 1 cut(s) 849
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.