RLG00000030679

Polygalacturonase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
65838799 .. 65841847
3049 bp
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UTR
Exon/CDS
Intron
RLM00000030679

Sequence Viewer

Length: 1353 bp
ATGCATTCTTCATCTCAAATCCATTTTCTGTCACTATTCCTCCTTCTCATCATTGTACCTTCATATTTTTCCTTCCCTCTTGGCCGTAACCCAGAGGAGCCACCTGTACTTGATCATCATCAAAAAACCTATACTGGTCATAATTTTTTGAGACCCTACCCAACAATATTTAGGACAAGCAGGAGGGAGCTTATTACAGCCAGTGCTTCATCCAAGGTTGTTTTTAATGTGCATGATTTTGGAGCTCAAGCAAATGGAGGAGATGATACCAAGGCATTTAGGAACGCATGGAAGAAGGCATGCTCAAATTCTGAAGGAATAACTGTTGAGCTCGTGGTCCCTAAGAACAGAAACTATCACATCAAACCAATTTCATTCTCTGGTCCTTGCAAATCTCAGGTCACCTTTAAGATCTATGGAACGATCAAAGCATCACCATTTCTATCGGATTACGAAACGGACAGTAGCCATTGGATTATGTTCGAGAATTTGCAGAACTTTAAAGTTGAAGGTGCTGGCACTGGCATCATCGATGGCAATGGAAGGAAATGGTGGGAGAATTCTTGCAAAGTTAACGAGTCCCTTCCTTGCACGAGCGCACCAACTGCTGTGACTTTCTATCAGTGCAATAATTTGGAGGTAGCAAATCTGAGGTTCCAGAATTCACAGAGAATGCATCTGACGTTTCAGAAATGTGCGCTTGTAAAAGTTTTGAATCTCATAATAACAGCACCAGGGAACAGTCCTAACACCGATGGAATCCATGTCACTGAAACACAAGATATTCGCATAAACAGCTGCCGCATTAGGACAGGTGACGACTGTATTTCGATAGTAAGTGGGTCAAGGAATGTTCAAGCTAGCGATATAACCTGCGGACCAGGTCATGGAATCAGTATTGGAAGCTTAGGAGCTGAAAATTCAGAAGCTCAGGTTTCCGATGTGGTAGTAAGTGGAGCGAACCTTATAGGCACCACTAATGGATTAAGAATCAAGACCTGGCAAGGAGGTTCTGGTTATGCAAAAAACATCAGATTCGAAAATGTTCTAATGCACAATGTCACCAATCCCATAATCATAGACCAACATTACTGTGATCAGGAAAAACCATGCCAAGATCAGGCTTCAGCTGTAAAAGTAAGCGGAGTGGTATACCAAAATGTGAAAGGCACAAGTGCTTCTAAAGTGGCGGTGAATTTCGATTGCAGTGAGCGCTTCGGATGTCAAGAGATTTTGGTGCAAGACGTGAACATAGTACCTCTAAACGATGAAGGAATTGCGACAGCTTCTTGTCAGAATGTTGGATTACGCGATAGAGGGATAGTTTCACCAAAATGCTCTTCCCAAAAGTAG

Protein Analysis

451

Amino Acids

49.33

Weight (kDa)

8.12

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 106 - 434 1.3e-98 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 971
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 1 cut(s) 1152
AccII CGCG 1 cut(s) 1311
AciI CCGC 4 cut(s) 802, 876, 1143, 1190
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 6 cut(s) 307, 487, 559, 661, 919, 1195
AcuI CTGAAG 2 cut(s) 333, 1110
AfaI GTAC 3 cut(s) 57, 108, 1257
AfeI AGCGCT 1 cut(s) 1214
AfiI CCNNNNNNNGG 2 cut(s) 887, 1120
AgsI TTSAA 3 cut(s) 509, 715, 857
AjiI CACGTC 1 cut(s) 1246
AjnI CCWGG 3 cut(s) 733, 880, 998
AjuI GAANNNNNNNTTGG 1 cut(s) 1324
Alw21I GWGCWC 2 cut(s) 247, 333
Alw26I GTCTC 1 cut(s) 145
Aor51HI AGCGCT 1 cut(s) 1214
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 798
ApoI RAATTY 6 cut(s) 307, 487, 559, 661, 919, 1195
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
Asp700I GAANNNNTTC 1 cut(s) 1044
AspLEI GCGC 3 cut(s) 599, 700, 1215
AspS9I GGNCC 3 cut(s) 337, 383, 878
AsuHPI GGTGA 6 cut(s) 394, 426, 827, 1054, 1204, 1320
AsuII TTCGAA 1 cut(s) 1038
AsuNHI GCTAGC 1 cut(s) 860
AvaII GGWCC 3 cut(s) 337, 383, 878
BanI GGYRCC 1 cut(s) 971
BanII GRGCYC 2 cut(s) 247, 333
BauI CACGAG 2 cut(s) 332, 592
Bbv12I GWGCWC 2 cut(s) 247, 333
BbvI GCAGC 1 cut(s) 785
BccI CCATC 2 cut(s) 527, 749
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 3 cut(s) 735, 882, 1000
BclI TGATCA 2 cut(s) 112, 1096
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 861
BfoI RGCGCY 1 cut(s) 1216
BfuAI ACCTGC 1 cut(s) 881
BglII AGATCT 1 cut(s) 411
BisI GCNGC 2 cut(s) 799, 802
BlsI GCNGC 2 cut(s) 800, 803
Bme1390I CCNGG 3 cut(s) 735, 882, 1000
Bme18I GGWCC 3 cut(s) 337, 383, 878
BmgBI CACGTC 1 cut(s) 1246
BmgT120I GGNCC 3 cut(s) 337, 383, 878
BmiI GGNNCC 4 cut(s) 99, 339, 656, 973
BmrFI CCNGG 3 cut(s) 735, 882, 1000
BmsI GCATC 3 cut(s) 440, 534, 685
BmtI GCTAGC 1 cut(s) 864
Bpu10I CCTNAGC 2 cut(s) 907, 930
Bpu14I TTCGAA 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 213, 270, 734
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 887, 1120
Bse1I ACTGG 3 cut(s) 139, 201, 526
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 3 cut(s) 735, 882, 1000
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 213, 270, 734
BseGI GGATG 2 cut(s) 209, 1226
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 887, 1120
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 3 cut(s) 410, 641, 944
BseNI ACTGG 3 cut(s) 139, 201, 526
BseRI GAGGAG 2 cut(s) 110, 273
BseXI GCAGC 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 1311
BshFI GGCC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 971
BshVI ATCGAT 1 cut(s) 531
BsiHKAI GWGCWC 2 cut(s) 247, 333
BslFI GGGAC 2 cut(s) 323, 565
BslI CCNNNNNNNGG 2 cut(s) 887, 1120
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 323, 565
BsmI GAATGC 2 cut(s) 4, 678
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 145
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 2 cut(s) 247, 333
Bsp143I GATC 5 cut(s) 112, 411, 423, 1096, 1117
BspACI CCGC 4 cut(s) 802, 876, 1143, 1190
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 3 cut(s) 409, 642, 943
BspDI ATCGAT 1 cut(s) 531
BspFNI CGCG 1 cut(s) 1311
BspLI GGNNCC 4 cut(s) 99, 339, 656, 973
BspMI ACCTGC 1 cut(s) 881
BspOI GCTAGC 1 cut(s) 864
BspQI GCTCTTC 1 cut(s) 1345
BspT104I TTCGAA 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 3 cut(s) 139, 201, 526
BssECI CCNNGG 3 cut(s) 213, 270, 734
BssMI GATC 5 cut(s) 112, 411, 423, 1096, 1117
BssNAI GTATAC 1 cut(s) 1153
BssSI CACGAG 2 cut(s) 332, 592
BssT1I CCWWGG 2 cut(s) 213, 270
Bst1107I GTATAC 1 cut(s) 1153
Bst2BI CACGAG 2 cut(s) 332, 592
Bst2UI CCWGG 3 cut(s) 735, 882, 1000
Bst4CI ACNGT 5 cut(s) 325, 464, 743, 824, 1094
Bst6I CTCTTC 1 cut(s) 1345
BstAPI GCANNNNNTGC 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 1038
BstC8I GCNNGC 3 cut(s) 301, 517, 862
BstDEI CTNAG 5 cut(s) 342, 396, 650, 907, 930
BstEII GGTNACC 1 cut(s) 400
BstF5I GGATG 2 cut(s) 209, 1226
BstFNI CGCG 1 cut(s) 1311
BstH2I RGCGCY 1 cut(s) 1216
BstHHI GCGC 3 cut(s) 599, 700, 1215
BstKTI GATC 5 cut(s) 115, 414, 426, 1099, 1120
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 5 cut(s) 112, 411, 423, 1096, 1117
BstMWI GCNNNNNNNGC 3 cut(s) 605, 795, 1212
BstNI CCWGG 3 cut(s) 735, 882, 1000
BstNSI RCATGY 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 3 cut(s) 733, 880, 998
BstUI CGCG 1 cut(s) 1311
BstV1I GCAGC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 1153
Bsu15I ATCGAT 1 cut(s) 531
BsuRI GGCC 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 531
BtrI CACGTC 1 cut(s) 1246
BtsCI GGATG 2 cut(s) 209, 1226
BtsI GCAGTG 1 cut(s) 1213
BtsIMutI CAGTG 5 cut(s) 208, 519, 629, 768, 1213
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 3 cut(s) 301, 517, 862
CfoI GCGC 3 cut(s) 599, 700, 1215
Cfr13I GGNCC 3 cut(s) 337, 383, 878
ClaI ATCGAT 1 cut(s) 531
CsiI ACCWGGT 1 cut(s) 880
Csp6I GTAC 3 cut(s) 56, 107, 1256
CviAII CATG 6 cut(s) 233, 288, 300, 764, 887, 1110
CviQI GTAC 3 cut(s) 56, 107, 1256
DdeI CTNAG 5 cut(s) 342, 396, 650, 907, 930
DpnI GATC 5 cut(s) 114, 413, 425, 1098, 1119
DpnII GATC 5 cut(s) 112, 411, 423, 1096, 1117
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 1345
EarI CTCTTC 1 cut(s) 1345
Ecl136II GAGCTC 2 cut(s) 245, 331
Eco130I CCWWGG 2 cut(s) 213, 270
Eco24I GRGCYC 2 cut(s) 247, 333
Eco31I GGTCTC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 337, 383, 878
Eco47III AGCGCT 1 cut(s) 1214
Eco53kI GAGCTC 2 cut(s) 245, 331
Eco57I CTGAAG 2 cut(s) 333, 1110
Eco91I GGTNACC 1 cut(s) 400
EcoICRI GAGCTC 2 cut(s) 245, 331
EcoO65I GGTNACC 1 cut(s) 400
EcoRI GAATTC 2 cut(s) 559, 661
EcoRII CCWGG 3 cut(s) 733, 880, 998
EcoT14I CCWWGG 2 cut(s) 213, 270
EcoT22I ATGCAT 2 cut(s) 6, 678
EcoT38I GRGCYC 2 cut(s) 247, 333
ErhI CCWWGG 2 cut(s) 213, 270
FaeI CATG 6 cut(s) 236, 291, 303, 767, 890, 1113
FaqI GGGAC 2 cut(s) 323, 565
FatI CATG 6 cut(s) 232, 287, 299, 763, 886, 1109
FbaI TGATCA 2 cut(s) 112, 1096
FblI GTMKAC 1 cut(s) 1152
Fnu4HI GCNGC 2 cut(s) 799, 802
FokI GGATG 2 cut(s) 196, 1233
FriOI GRGCYC 2 cut(s) 247, 333
Fsp4HI GCNGC 2 cut(s) 799, 802
FspBI CTAG 1 cut(s) 861
GlaI GCGC 3 cut(s) 598, 699, 1214
GluI GCNGC 2 cut(s) 799, 802
HaeII RGCGCY 1 cut(s) 1216
HaeIII GGCC 1 cut(s) 84
HhaI GCGC 3 cut(s) 599, 700, 1215
Hin1II CATG 6 cut(s) 236, 291, 303, 767, 890, 1113
Hin6I GCGC 3 cut(s) 597, 698, 1213
HinP1I GCGC 3 cut(s) 597, 698, 1213
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 1 cut(s) 904
HinfI GANTC 6 cut(s) 578, 715, 759, 891, 990, 1035
HpaI GTTAAC 1 cut(s) 574
HphI GGTGA 6 cut(s) 394, 426, 827, 1054, 1204, 1320
Hpy166II GTNNAC 3 cut(s) 574, 1153, 1249
Hpy188III TCNNGA 5 cut(s) 484, 658, 994, 1100, 1226
Hpy8I GTNNAC 3 cut(s) 574, 1153, 1249
HpyAV CCTTC 9 cut(s) 53, 69, 82, 289, 308, 503, 537, 593, 1265
HpyCH4III ACNGT 5 cut(s) 325, 464, 743, 824, 1094
HpyCH4IV ACGT 2 cut(s) 683, 1245
HpyF10VI GCNNNNNNNGC 3 cut(s) 605, 795, 1212
HpyF3I CTNAG 5 cut(s) 342, 396, 650, 907, 930
HpySE526I ACGT 2 cut(s) 683, 1245
Hsp92II CATG 6 cut(s) 236, 291, 303, 767, 890, 1113
HspAI GCGC 3 cut(s) 597, 698, 1213
Ksp22I TGATCA 2 cut(s) 112, 1096
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 5 cut(s) 112, 411, 423, 1096, 1117
LguI GCTCTTC 1 cut(s) 1345
LmnI GCTCC 5 cut(s) 97, 187, 242, 911, 956
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 3 cut(s) 440, 534, 685
MabI ACCWGGT 1 cut(s) 880
MaeI CTAG 1 cut(s) 861
MaeII ACGT 2 cut(s) 683, 1245
MaeIII GTNAC 7 cut(s) 30, 86, 400, 610, 766, 815, 1060
MalI GATC 5 cut(s) 114, 413, 425, 1098, 1119
MboI GATC 5 cut(s) 112, 411, 423, 1096, 1117
MboII GAAGA 2 cut(s) 304, 1332
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 247, 333
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 1282
Mph1103I ATGCAT 2 cut(s) 6, 678
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 5 cut(s) 225, 408, 501, 573, 986
MslI CAYNNNNRTG 2 cut(s) 1092, 1333
MspA1I CMGCKG 2 cut(s) 798, 1130
MspR9I CCNGG 3 cut(s) 735, 882, 1000
Mva1269I GAATGC 2 cut(s) 4, 678
MvaI CCWGG 3 cut(s) 735, 882, 1000
MvnI CGCG 1 cut(s) 1311
MwoI GCNNNNNNNGC 3 cut(s) 605, 795, 1212
NdeII GATC 5 cut(s) 112, 411, 423, 1096, 1117
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 6 cut(s) 236, 291, 303, 767, 890, 1113
NlaIV GGNNCC 4 cut(s) 99, 339, 656, 973
NmuCI GTSAC 6 cut(s) 30, 400, 610, 766, 815, 1060
NsiI ATGCAT 2 cut(s) 6, 678
NspI RCATGY 1 cut(s) 303
NspV TTCGAA 1 cut(s) 1038
PaeI GCATGC 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 1345
PctI GAATGC 2 cut(s) 4, 678
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 5 cut(s) 715, 759, 891, 990, 1035
PflFI GACNNNGTC 1 cut(s) 882
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 2 cut(s) 800, 803
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp124BI GAGCTC 2 cut(s) 247, 333
Psp6I CCWGG 3 cut(s) 733, 880, 998
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 3 cut(s) 733, 880, 998
PspN4I GGNNCC 4 cut(s) 99, 339, 656, 973
PspPI GGNCC 3 cut(s) 337, 383, 878
PsuI RGATCY 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 882
PvuII CAGCTG 2 cut(s) 798, 1130
RsaI GTAC 3 cut(s) 57, 108, 1257
RsaNI GTAC 3 cut(s) 56, 107, 1256
RseI CAYNNNNRTG 2 cut(s) 1092, 1333
SacI GAGCTC 2 cut(s) 247, 333
SapI GCTCTTC 1 cut(s) 1345
SaqAI TTAA 5 cut(s) 225, 408, 501, 573, 986
SatI GCNGC 2 cut(s) 799, 802
Sau3AI GATC 5 cut(s) 112, 411, 423, 1096, 1117
Sau96I GGNCC 3 cut(s) 337, 383, 878
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 735, 882, 1000
SduI GDGCHC 2 cut(s) 247, 333
SexAI ACCWGGT 1 cut(s) 880
SfaNI GCATC 3 cut(s) 440, 534, 685
SfuI TTCGAA 1 cut(s) 1038
SinI GGWCC 3 cut(s) 337, 383, 878
SmiMI CAYNNNNRTG 2 cut(s) 1092, 1333
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SphI GCATGC 1 cut(s) 303
SsiI CCGC 4 cut(s) 802, 876, 1143, 1190
SspI AATATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 861
SstI GAGCTC 2 cut(s) 247, 333
StyD4I CCNGG 3 cut(s) 733, 880, 998
StyI CCWWGG 2 cut(s) 213, 270
TaaI ACNGT 5 cut(s) 325, 464, 743, 824, 1094
TaiI ACGT 2 cut(s) 686, 1248
TaqI TCGA 5 cut(s) 483, 531, 830, 1038, 1200
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 5 cut(s) 715, 759, 891, 990, 1035
Tru1I TTAA 5 cut(s) 225, 408, 501, 573, 986
Tru9I TTAA 5 cut(s) 225, 408, 501, 573, 986
TscAI CASTG 5 cut(s) 208, 526, 629, 775, 1213
TseFI GTSAC 6 cut(s) 30, 400, 610, 766, 815, 1060
TseI GCWGC 1 cut(s) 798
Tsp45I GTSAC 6 cut(s) 30, 400, 610, 766, 815, 1060
TspDTI ATGAA 4 cut(s) 51, 198, 363, 1284
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 5 cut(s) 208, 526, 629, 775, 1213
Tth111I GACNNNGTC 1 cut(s) 882
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 3 cut(s) 337, 383, 878
XapI RAATTY 6 cut(s) 307, 487, 559, 661, 919, 1195
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 1 cut(s) 861
Zsp2I ATGCAT 2 cut(s) 6, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.