Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010715

Physical Location & Seq

Genomic Coordinates Reverse (-)

36459583 .. 36461723

Gene Structure 2141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1309400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCATCTATCTTTTGAGTCGTGTGTGAATGTAAAAGCTTCGAATCTCATAGTGACCGCACCAGGGGATAGCCCTAACACAGATGGAATCCATGTTTCAGGAACACAAAATATTGGGATTAACAACTGTCTCATTAGGACAGGTGATGACTGTATTTCGATAGTAAGTGGGTCAAAAACTGTTCGAGCTGAGGATATAACATGTGGACCAGGTCATGGAATCAGCATTGGAAGCCTAGGAGCTGGAAATTCACAAGCAGAGGTTTCAGATGTGATGGTTTCTAGAGCCAACCTTATGGACACCACTAATGGATTGCGAATTAAGACTTGGCAGGGCGGGTCTGGATATGCAACAAACATCAGATTCAAAAATGTGGTGATGGCCAACGTGAGCAATCCAATTATCATAGACCAACATTACTGCGATCAGGATAAACCGTGCCTAGAACAGGATTCGGCGGTGGAAATAAGCAATGTGTTATATGAGAATGTAAAAGGCACGAGCGCTTCAAAAGTGGCAGTGAAATTTGACTGCAGCAAGGACTTCAGATGTCAAGAAATTTTGTTGAAAGACGTAAACCTAAAACCTCTAGCCGATGAAACTGCCCAAGCTTCGTGTGAGAATGTCAGTTTAAACCGTATCGGAACTGTTTCTCCAACATGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

223

Amino Acids

23.56

Weight (kDa)

5.16

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	1 - 210	9.1e-73	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07970
fragaria_vesca	FvH4_7g01140 FvH4_7g01140
malus_domestica	MD02G1309400.v1.1 MD07G1011600.v1.1
prunus_persica	Prupe.2G014800_v2.0.a1
pyrus_communis	pycom02g26060 pycom07g00970
rosa_chinensis	RchiOBHm_Chr1g0316321
rosa_laevigata	RLG00000030679
rosa_multiflora	Rmu_sc0002531.1_g000005 Rmu_sc0004511.1_g000005
rosa_roxburghii	Rroxscaffold_4G00331050
rosa_rugosa	Rorug01G0009700 Rorug01G0009700
rosa_samantha	Rh1AG019500 Rh1BG014600 Rh1CG017100 Rh1DG014500
rosa_wichuraiana	Rw1G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	3 cut(s)	57, 336, 458
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	247, 524, 558
AcuI	CTGAAG	1 cut(s)	529
AfeI	AGCGCT	1 cut(s)	505
AfiI	CCNNNNNNNGG	3 cut(s)	63, 215, 448
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	367, 510, 568
AjnI	CCWGG	2 cut(s)	61, 208
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
AloI	GAACNNNNNNTCC	2 cut(s)	637, 669
AluBI	AGCT	4 cut(s)	38, 188, 242, 611
AluI	AGCT	4 cut(s)	38, 188, 242, 611
Alw26I	GTCTC	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	505
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	3 cut(s)	247, 524, 558
Asp700I	GAANNNNTTC	1 cut(s)	649
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	155, 388
AsuII	TTCGAA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	206
AvrII	CCTAGG	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	383
BauI	CACGAG	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	3 cut(s)	77, 268, 373
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	2 cut(s)	63, 210
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	4 cut(s)	236, 282, 443, 590
BfmI	CTRYAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	507
BisI	GCNGC	1 cut(s)	535
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	2 cut(s)	63, 210
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	63, 210
BmsI	GCATC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	62, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 215, 448
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	63, 210
BseDI	CCNNGG	2 cut(s)	62, 235
BseLI	CCNNNNNNNGG	3 cut(s)	63, 215, 448
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	546
BshFI	GGCC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	63, 215, 448
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	57, 336, 458
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	536
BspT104I	TTCGAA	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	62, 235
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	63, 210
Bst4CI	ACNGT	6 cut(s)	128, 152, 181, 438, 638, 649
BstBI	TTCGAA	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	2 cut(s)	63, 210
BstNSI	RCATGY	2 cut(s)	204, 663
BstSCI	CCNGG	2 cut(s)	61, 208
BstSFI	CTRYAG	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	208
CviAII	CATG	4 cut(s)	92, 201, 215, 660
CviJI	RGCY	9 cut(s)	38, 72, 188, 234, 242, 287, 383, 593, 611
CviKI_1	RGCY	9 cut(s)	38, 72, 188, 234, 242, 287, 383, 593, 611
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	206
Eco47III	AGCGCT	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	61, 208
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	4 cut(s)	95, 204, 218, 663
FatI	CATG	4 cut(s)	91, 200, 214, 659
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	535
Fsp4HI	GCNGC	1 cut(s)	535
FspBI	CTAG	4 cut(s)	236, 282, 443, 590
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	4 cut(s)	95, 204, 218, 663
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	2 cut(s)	36, 609
HinfI	GANTC	6 cut(s)	17, 43, 87, 219, 363, 452
HphI	GGTGA	2 cut(s)	155, 388
Hpy166II	GTNNAC	2 cut(s)	206, 577
Hpy188I	TCNGA	4 cut(s)	268, 362, 548, 644
Hpy188III	TCNNGA	5 cut(s)	99, 282, 342, 428, 554
Hpy8I	GTNNAC	2 cut(s)	206, 577
HpyCH4III	ACNGT	6 cut(s)	128, 152, 181, 438, 638, 649
HpyCH4IV	ACGT	2 cut(s)	387, 573
HpyCH4V	TGCA	3 cut(s)	4, 350, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	387, 573
Hsp92II	CATG	4 cut(s)	95, 204, 218, 663
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	1 cut(s)	13
MabI	ACCWGGT	1 cut(s)	208
MaeI	CTAG	4 cut(s)	236, 282, 443, 590
MaeII	ACGT	2 cut(s)	387, 573
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	5 cut(s)	247, 318, 399, 524, 558
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	3 cut(s)	184, 253, 597
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	4 cut(s)	120, 321, 632, 667
Msp20I	TGGCCA	1 cut(s)	383
MspR9I	CCNGG	2 cut(s)	63, 210
MssI	GTTTAAAC	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	63, 210
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	4 cut(s)	95, 204, 218, 663
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	204, 663
NspV	TTCGAA	1 cut(s)	41
PciI	ACATGT	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	5 cut(s)	43, 87, 219, 363, 452
PflFI	GACNNNGTC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	1 cut(s)	25
PmeI	GTTTAAAC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	25
PscI	ACATGT	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	61, 208
PspGI	CCWGG	2 cut(s)	61, 208
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	536
PsyI	GACNNNGTC	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	120, 321, 632, 667
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	63, 210
SexAI	ACCWGGT	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	532
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	5 cut(s)	247, 318, 399, 524, 558
SsiI	CCGC	3 cut(s)	57, 336, 458
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	4 cut(s)	236, 282, 443, 590
StyD4I	CCNGG	2 cut(s)	61, 208
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	6 cut(s)	128, 152, 181, 438, 638, 649
TaiI	ACGT	2 cut(s)	390, 576
TaqI	TCGA	3 cut(s)	41, 158, 184
TasI	AATT	5 cut(s)	247, 318, 399, 524, 558
TfiI	GAWTC	5 cut(s)	43, 87, 219, 363, 452
Tru1I	TTAA	4 cut(s)	120, 321, 632, 667
Tru9I	TTAA	4 cut(s)	120, 321, 632, 667
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	525
Tth111I	GACNNNGTC	1 cut(s)	210
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	247, 524, 558
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	2 cut(s)	204, 663
XmaJI	CCTAGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	4 cut(s)	236, 282, 443, 590
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.