Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010715

Physical Location & Seq

Genomic Coordinates Forward (+)

1557627 .. 1560401

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCAGTCTTCATCTCAACGCCATTTTCTGTCACTACTATTTCTCCTTCTCATTATTGCACCTTCATATTTTTCCTTCCCTCTTGGCCACAACAACCCAGAGGAGCGACCTGTGCTTGATCATCATCATCATCAAACGTATACTGGTCATAATATTTCGAGAAAGACAAGCAGGAGGGAGCTTATTACAGCCAGGGCTTCAGCTAAGGTTGTTTATAATGTGCATGATTTTGGAGCTAAAGCAAATGGAGGAGATGATACCAAGGCATTTAGGAAGGCATGGAAGAAGGCATGCTCTAATTCTAGAGCAAGAACTGTTGAACTCGTGGTCCCTAAGAACAGAAACTATCACCTCAAACCAATTACATTCTCTGGTCCTTGCAAATCTCATGTCACCTTTAAGATCTATGGAACGATCAAAGCATCACCAATTCGATCGGATTACAAAAGGGACAGAAGGCATTGGATTACGTTCGAGAATTTGCAGAACTTCAGAGTTGAAGGTGGTGGAACTGGCATCATCAATGGCAATGGAAGGAAATGGTGGGAGAACTCTTGCAAAGTTAACAAGTCCCTTCCTTGCACGAGCGCACCAACTGCTGTGACTTTCTATGAGTGCAAAAATTTGGAGGTAGCCAATCTGAGGTTCCGAAATGCACAGAAAATGCATCTTTCTTTTCAGAAATGTGTGCTTGTAAAAGTCTTCAATCTGATAATAACAGCACCAGCGAATAGTCCTAACACCGATGGAATCCATGTCACTGATACAAAATACATTAGCATAAACAGCTGCCAAATTAGGACAGGTGACGACTGTATCTCGATAGTAAGCGGATCAAGGAATGTTCAAGCTAGCGATATAACCTGCGGACCAGGTCATGGAATAAGTATTGGAAGCTTAGGATCTGGGAATTCAGAAGCTCAGGTTTCAGATGTGGTAGTAACTAGAGCCAAGCTTATCGGCACCACTAATGGACTGAGAATCAAGACTTGGCAAGGAGGTTCTGGTTATGCAAAAAACATCAGATTCCAAAATGTTCTATTGCACAATGTCACCAATCCAATAATCATAGACCAACATTACTGTGATCAGAAAAAACCATGCAAAGATCAGGCTTCGGCAGTAAGAATAAGCGGAGTGGTATACCGAAATGTGAGAGGCACAAGTGCTTCTGAAGTGGCAGTAAAATTCGATTGCAGTGAGCGCTTCGGATGCCGGAAGATCTTGGTGCAAGACGTGAACATAGTACCTCTAAATGATGAAGGGATCGCCACAGCTTCATGTCAGAATGTTGGAGTAAGTCATAGAGGGATAGTTTCACCAAAATGTTCTTCAACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

448

Amino Acids

49.4

Weight (kDa)

9.73

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	104 - 433	1.8e-100	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07970
fragaria_vesca	FvH4_7g01140 FvH4_7g01140
malus_domestica	MD02G1309400.v1.1 MD07G1011600.v1.1
prunus_persica	Prupe.2G014800_v2.0.a1
pyrus_communis	pycom02g26060 pycom07g00970
rosa_chinensis	RchiOBHm_Chr1g0316321
rosa_laevigata	RLG00000030679
rosa_multiflora	Rmu_sc0002531.1_g000005 Rmu_sc0004511.1_g000005
rosa_roxburghii	Rroxscaffold_4G00331050
rosa_rugosa	Rorug01G0009700 Rorug01G0009700
rosa_samantha	Rh1AG019500 Rh1BG014600 Rh1CG017100 Rh1DG014500
rosa_wichuraiana	Rw1G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	962
AccB7I	CCANNNNNTGG	1 cut(s)	878
AccI	GTMKAC	2 cut(s)	140, 1143
AciI	CCGC	3 cut(s)	831, 867, 1134
AclWI	GGATC	3 cut(s)	841, 910, 1274
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	4 cut(s)	478, 622, 910, 1187
AcuI	CTGAAG	3 cut(s)	183, 475, 1194
AfaI	GTAC	1 cut(s)	1248
AfeI	AGCGCT	1 cut(s)	1205
AfiI	CCNNNNNNNGG	2 cut(s)	642, 878
AgsI	TTSAA	5 cut(s)	320, 500, 706, 848, 1335
AjiI	CACGTC	1 cut(s)	1237
AjnI	CCWGG	2 cut(s)	191, 871
AjuI	GAANNNNNNNTTGG	5 cut(s)	629, 661, 973, 1005, 1315
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	9 cut(s)	181, 203, 236, 789, 851, 897, 920, 955, 1277
AluI	AGCT	9 cut(s)	181, 203, 236, 789, 851, 897, 920, 955, 1277
AlwI	GGATC	3 cut(s)	841, 910, 1274
Aor51HI	AGCGCT	1 cut(s)	1205
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	789
ApoI	RAATTY	4 cut(s)	478, 622, 910, 1187
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AspLEI	GCGC	2 cut(s)	590, 1206
AspS9I	GGNCC	3 cut(s)	328, 374, 869
AsuHPI	GGTGA	6 cut(s)	341, 385, 417, 818, 1045, 1311
AsuNHI	GCTAGC	1 cut(s)	851
AvaII	GGWCC	3 cut(s)	328, 374, 869
BaeI	ACNNNNGTAYC	2 cut(s)	799, 832
BalI	TGGCCA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	962
BauI	CACGAG	2 cut(s)	323, 583
BbsI	GAAGAC	1 cut(s)	694
BbvI	GCAGC	1 cut(s)	776
BccI	CCATC	1 cut(s)	740
BciT130I	CCWGG	2 cut(s)	193, 873
BclI	TGATCA	2 cut(s)	118, 1087
BfaI	CTAG	3 cut(s)	303, 852, 945
BfoI	RGCGCY	1 cut(s)	1207
BfuAI	ACCTGC	1 cut(s)	872
BglII	AGATCT	2 cut(s)	402, 1221
BisI	GCNGC	1 cut(s)	790
BlsI	GCNGC	1 cut(s)	791
Bme1390I	CCNGG	2 cut(s)	193, 873
Bme18I	GGWCC	3 cut(s)	328, 374, 869
BmgBI	CACGTC	1 cut(s)	1237
BmgT120I	GGNCC	3 cut(s)	328, 374, 869
BmiI	GGNNCC	3 cut(s)	330, 647, 964
BmrFI	CCNGG	2 cut(s)	193, 873
BmsI	GCATC	4 cut(s)	431, 525, 676, 1202
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	694
Bpu10I	CCTNAGC	3 cut(s)	204, 898, 921
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	192, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	642, 878
Bse1I	ACTGG	2 cut(s)	148, 517
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	193, 873
BseDI	CCNNGG	2 cut(s)	192, 261
BseGI	GGATG	1 cut(s)	1217
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	642, 878
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	632, 935, 968
BseNI	ACTGG	2 cut(s)	148, 517
BseRI	GAGGAG	2 cut(s)	116, 264
BseXI	GCAGC	1 cut(s)	776
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	962
BsiEI	CGRYCG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	1216
BslFI	GGGAC	3 cut(s)	314, 464, 556
BslI	CCNNNNNNNGG	2 cut(s)	642, 878
BsmFI	GGGAC	3 cut(s)	314, 464, 556
BsnI	GGCC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	831, 867, 1134
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	633, 934, 969
BspLI	GGNNCC	3 cut(s)	330, 647, 964
BspMI	ACCTGC	1 cut(s)	872
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	3 cut(s)	841, 910, 1274
BspT107I	GGYRCC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	148, 517
BssECI	CCNNGG	2 cut(s)	192, 261
BssNAI	GTATAC	2 cut(s)	141, 1144
BssSI	CACGAG	2 cut(s)	323, 583
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	2 cut(s)	141, 1144
Bst2BI	CACGAG	2 cut(s)	323, 583
Bst2UI	CCWGG	2 cut(s)	193, 873
Bst4CI	ACNGT	3 cut(s)	316, 815, 1085
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	292, 853
BstDEI	CTNAG	6 cut(s)	204, 333, 641, 898, 921, 977
BstF5I	GGATG	1 cut(s)	1217
BstH2I	RGCGCY	1 cut(s)	1207
BstHHI	GCGC	2 cut(s)	590, 1206
BstMCI	CGRYCG	1 cut(s)	437
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 596, 786, 1203, 1212
BstNI	CCWGG	2 cut(s)	193, 873
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	191, 871
BstV1I	GCAGC	1 cut(s)	776
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	3 cut(s)	402, 902, 1221
BstYI	RGATCY	3 cut(s)	402, 902, 1221
BstZ17I	GTATAC	2 cut(s)	141, 1144
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	1237
BtsCI	GGATG	1 cut(s)	1217
BtsI	GCAGTG	1 cut(s)	1204
BtsIMutI	CAGTG	2 cut(s)	759, 1204
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	2 cut(s)	292, 853
CfoI	GCGC	2 cut(s)	590, 1206
Cfr13I	GGNCC	3 cut(s)	328, 374, 869
CsiI	ACCWGGT	1 cut(s)	871
Csp6I	GTAC	1 cut(s)	1247
CviAII	CATG	8 cut(s)	224, 279, 291, 389, 755, 878, 1101, 1281
CviQI	GTAC	1 cut(s)	1247
DdeI	CTNAG	6 cut(s)	204, 333, 641, 898, 921, 977
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	3 cut(s)	328, 374, 869
Eco47III	AGCGCT	1 cut(s)	1205
Eco57I	CTGAAG	3 cut(s)	183, 475, 1194
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	191, 871
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	8 cut(s)	227, 282, 294, 392, 758, 881, 1104, 1284
FaqI	GGGAC	3 cut(s)	314, 464, 556
FatI	CATG	8 cut(s)	223, 278, 290, 388, 754, 877, 1100, 1280
FbaI	TGATCA	2 cut(s)	118, 1087
FblI	GTMKAC	2 cut(s)	140, 1143
Fnu4HI	GCNGC	1 cut(s)	790
FokI	GGATG	1 cut(s)	1224
Fsp4HI	GCNGC	1 cut(s)	790
FspBI	CTAG	3 cut(s)	303, 852, 945
GlaI	GCGC	2 cut(s)	589, 1205
GluI	GCNGC	1 cut(s)	790
HaeII	RGCGCY	1 cut(s)	1207
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	1216
HhaI	GCGC	2 cut(s)	590, 1206
Hin1II	CATG	8 cut(s)	227, 282, 294, 392, 758, 881, 1104, 1284
Hin6I	GCGC	2 cut(s)	588, 1204
HinP1I	GCGC	2 cut(s)	588, 1204
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	2 cut(s)	895, 953
HinfI	GANTC	3 cut(s)	750, 981, 1026
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	1 cut(s)	1216
HphI	GGTGA	6 cut(s)	341, 385, 417, 818, 1045, 1311
Hpy166II	GTNNAC	4 cut(s)	141, 565, 1144, 1240
Hpy188III	TCNNGA	5 cut(s)	159, 303, 475, 820, 985
Hpy8I	GTNNAC	4 cut(s)	141, 565, 1144, 1240
HpyCH4III	ACNGT	3 cut(s)	316, 815, 1085
HpyCH4IV	ACGT	3 cut(s)	137, 470, 1236
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 596, 786, 1203, 1212
HpyF3I	CTNAG	6 cut(s)	204, 333, 641, 898, 921, 977
HpySE526I	ACGT	3 cut(s)	137, 470, 1236
Hsp92II	CATG	8 cut(s)	227, 282, 294, 392, 758, 881, 1104, 1284
HspAI	GCGC	2 cut(s)	588, 1204
Ksp22I	TGATCA	2 cut(s)	118, 1087
KspAI	GTTAAC	1 cut(s)	565
LmnI	GCTCC	3 cut(s)	103, 178, 233
Lsp1109I	GCAGC	1 cut(s)	776
LweI	GCATC	4 cut(s)	431, 525, 676, 1202
MabI	ACCWGGT	1 cut(s)	871
MaeI	CTAG	3 cut(s)	303, 852, 945
MaeII	ACGT	3 cut(s)	137, 470, 1236
MaeIII	GTNAC	7 cut(s)	30, 391, 601, 757, 806, 940, 1051
MboII	GAAGA	4 cut(s)	295, 694, 1231, 1323
MflI	RGATCY	3 cut(s)	402, 902, 1221
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	9 cut(s)	298, 360, 429, 478, 622, 795, 910, 1187, 1339
MluNI	TGGCCA	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	1273
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	399, 564
MslI	CAYNNNNRTG	2 cut(s)	1083, 1324
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	789
MspI	CCGG	1 cut(s)	1216
MspR9I	CCNGG	2 cut(s)	193, 873
MvaI	CCWGG	2 cut(s)	193, 873
MwoI	GCNNNNNNNGC	5 cut(s)	112, 596, 786, 1203, 1212
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	8 cut(s)	227, 282, 294, 392, 758, 881, 1104, 1284
NlaIV	GGNNCC	3 cut(s)	330, 647, 964
NmuCI	GTSAC	6 cut(s)	30, 391, 601, 757, 806, 1051
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	750, 981, 1026
PflFI	GACNNNGTC	1 cut(s)	873
PflMI	CCANNNNNTGG	1 cut(s)	878
PkrI	GCNGC	1 cut(s)	791
Ple19I	CGATCG	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	191, 871
PspGI	CCWGG	2 cut(s)	191, 871
PspN4I	GGNNCC	3 cut(s)	330, 647, 964
PspPI	GGNCC	3 cut(s)	328, 374, 869
PsuI	RGATCY	3 cut(s)	402, 902, 1221
PsyI	GACNNNGTC	1 cut(s)	873
PvuI	CGATCG	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	1 cut(s)	1248
RsaNI	GTAC	1 cut(s)	1247
RseI	CAYNNNNRTG	2 cut(s)	1083, 1324
SaqAI	TTAA	2 cut(s)	399, 564
SatI	GCNGC	1 cut(s)	790
Sau96I	GGNCC	3 cut(s)	328, 374, 869
ScrFI	CCNGG	2 cut(s)	193, 873
SexAI	ACCWGGT	1 cut(s)	871
SfaNI	GCATC	4 cut(s)	431, 525, 676, 1202
SinI	GGWCC	3 cut(s)	328, 374, 869
SmiMI	CAYNNNNRTG	2 cut(s)	1083, 1324
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	9 cut(s)	298, 360, 429, 478, 622, 795, 910, 1187, 1339
SsiI	CCGC	3 cut(s)	831, 867, 1134
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	3 cut(s)	303, 852, 945
StyD4I	CCNGG	2 cut(s)	191, 871
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	316, 815, 1085
TaiI	ACGT	3 cut(s)	140, 473, 1239
TaqI	TCGA	5 cut(s)	158, 433, 474, 821, 1191
TasI	AATT	9 cut(s)	298, 360, 429, 478, 622, 795, 910, 1187, 1339
TfiI	GAWTC	3 cut(s)	750, 981, 1026
Tru1I	TTAA	2 cut(s)	399, 564
Tru9I	TTAA	2 cut(s)	399, 564
TscAI	CASTG	2 cut(s)	766, 1204
TseFI	GTSAC	6 cut(s)	30, 391, 601, 757, 806, 1051
TseI	GCWGC	1 cut(s)	789
Tsp45I	GTSAC	6 cut(s)	30, 391, 601, 757, 806, 1051
TspDTI	ATGAA	3 cut(s)	54, 1269, 1275
TspRI	CASTG	2 cut(s)	766, 1204
Tth111I	GACNNNGTC	1 cut(s)	873
Van91I	CCANNNNNTGG	1 cut(s)	878
VpaK11BI	GGWCC	3 cut(s)	328, 374, 869
XapI	RAATTY	4 cut(s)	478, 622, 910, 1187
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	294
XmiI	GTMKAC	2 cut(s)	140, 1143
XspI	CTAG	3 cut(s)	303, 852, 945
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.