pycom07g00970

Polygalacturonase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
822197 .. 826684
4488 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00970.4

Sequence Viewer

Length: 1578 bp
ATGCAATTGTGTCTGTGTCAAAAAGTGAAAGTTACAATGTTTTCACAAAACCAGTTTCTCTCAGTACTTCTCATAATATTAGCCTCATTTCCCTTCTCTTTTAGTAGTGACCTAGGGAACCCACTAGTTGTACTTGATCTTCATCGTCACCATCGAACAAGAAGGCTTCAATCAACTTCAGCAAAGAATGTTACTGTAAATGTGGATCATTTTGGAGCAAAAGGAGATGGAGGGGATGATACCCAGGCATTTATGAACGCTTGGGAGAAGGCTTGTTCTTCTAAAAGAGGTGTTGAGCTTGTGGTTCCTAAGAATAGGGTCTATCGTCTGAAGCCAATGAATTTCTCCGGCCCTTGCAAATCTGATGTCACGCTCAAGATCTATGGAACCATCAAAGCCTCTACCAAACGATCAGATTATACGGACTTACGGCATTGGATTTTGTTTACAAATTTGACTAACTTCAGAGTTGAAGGTGGTGGCACCATCAATGGCAATGGAAGGAAATGGTGGCAAAACTCATGCAAAGTTAACGAATCCCTTGCCGTGACTTTCTTCGGGTGCAACACTTTGGAAGTAGACAATGTGAGGTTCCGAAATGCCCAGAAAATGCATCTATCTTTTCAGTCGTGTGTGAATGTAAAAGCTTCGAATCTCATAGTGACCGCACCAGGCGATAGCCCAAACACAGATGGAATCCATGTCACAGCAACACAAAATATTCGGATAAGCAACTGTCTCATTAGAACAGGTGATGACTGTATTTCGATAGTAAGTGGGTCAAAAAATGTTCGAGCTGATGATATAACCTGCGGACCAGGTCATGGAATTAGCATTGGAAGCTTAGGAGCTGGAAATTCACAAGCAGAGGTTTCAGATGTGGTGGTTTCTAAAGCCAAAATTATTGGCACCACTAACGGATTAAGAATAAAGACTTGGCAGGGCGGGTCTGGGTATGCAACAAACATCAGATTCAAAAATATTATGATGGCCAATGTGAGCAATCCAATTATCATAGACCAATACTATTGCGATCAGGATTCACCATGCCAAGAACAGGCTTCAGCTGTGAAAATAAGCAATGTGGTATATGAGAATGTGAAAGGCACAAGTGCTTCAAAAGTGGCAGTGAAATTTGACTGCAGCAAGAGTTTCGGATGTCAAGACATTTTGTTAAAAGACGTAAACCTAAGATCTCTAGCCAATGAAATTGCCCAAGCTTCGTGTGAGCATGTCGATTTAAGCCATAGAGGAACGGTTTCTCCAAAATATAACAATTGCGAAATCCACCCCAAAGGTTCGTTAGACCTCACATGTTGGGAAGCAGCTGTGAAATTTGTGATGACTAAATCAACCGTTGAAAAGATAATAGTTGAGAAATCCACCCTGCCAATTGATGTAATAGAAAACCACACCCAACGTACTGCTGTTCACGACGTGAGAAACCCGAGCCATATTGCTATTGGAATAGTTGAGGGGGGTAATGTCATCGTGTTGCAAGAGTTATACGAAAAATGGTTCAAGCTGATAGAATTAACGTCCTACGTGGGCTGTTGTGTTGGGCACAATTGCAGTTAA

Protein Analysis

526

Amino Acids

57.62

Weight (kDa)

8.78

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 818
AccB1I GGYRCC 2 cut(s) 482, 908
AccB7I CCANNNNNTGG 1 cut(s) 824
AccI GTMKAC 1 cut(s) 579
AciI CCGC 3 cut(s) 666, 813, 945
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 990
AcsI RAATTY 5 cut(s) 340, 451, 856, 1133, 1334
AcuI CTGAAG 4 cut(s) 162, 350, 448, 1047
AdeI CACNNNGTG 1 cut(s) 1438
AfaI GTAC 3 cut(s) 66, 132, 1423
AfiI CCNNNNNNNGG 2 cut(s) 824, 1057
AflIII ACRYGT 1 cut(s) 1313
AgsI TTSAA 6 cut(s) 170, 473, 976, 1119, 1361, 1522
AhlI ACTAGT 1 cut(s) 124
AjiI CACGTC 1 cut(s) 1438
AjnI CCWGG 3 cut(s) 243, 670, 817
AjuI GAANNNNNNNTTGG 2 cut(s) 919, 951
AloI GAACNNNNNNTCC 2 cut(s) 1246, 1278
AluBI AGCT 9 cut(s) 298, 647, 797, 843, 851, 1067, 1220, 1328, 1525
AluI AGCT 9 cut(s) 298, 647, 797, 843, 851, 1067, 1220, 1328, 1525
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 1447
AoxI GGCC 2 cut(s) 349, 990
ApeKI GCWGC 2 cut(s) 1143, 1325
ApoI RAATTY 5 cut(s) 340, 451, 856, 1133, 1334
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp700I GAANNNNTTC 1 cut(s) 1258
AspA2I CCTAGG 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 350, 815
AsuHPI GGTGA 3 cut(s) 140, 764, 1035
AsuII TTCGAA 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 1447
AvaII GGWCC 1 cut(s) 815
AvrII CCTAGG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 1566
BalI TGGCCA 1 cut(s) 992
BanI GGYRCC 2 cut(s) 482, 908
BarI GAAGNNNNNNTAC 2 cut(s) 123, 155
BbvI GCAGC 2 cut(s) 1155, 1337
BccI CCATC 6 cut(s) 159, 221, 398, 494, 686, 982
BceAI ACGGC 2 cut(s) 446, 530
BcgI CGANNNNNNTGC 4 cut(s) 524, 558, 1135, 1169
BciT130I CCWGG 3 cut(s) 245, 672, 819
BcoDI GTCTC 1 cut(s) 743
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 3 cut(s) 113, 125, 1199
BfmI CTRYAG 1 cut(s) 1141
BfuAI ACCTGC 1 cut(s) 818
BglII AGATCT 2 cut(s) 378, 1193
BisI GCNGC 2 cut(s) 1144, 1326
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 2 cut(s) 1145, 1327
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 245, 672, 819
Bme18I GGWCC 1 cut(s) 815
BmeT110I CYCGRG 1 cut(s) 1447
BmgBI CACGTC 1 cut(s) 1438
BmgT120I GGNCC 2 cut(s) 350, 815
BmiI GGNNCC 6 cut(s) 119, 306, 388, 484, 593, 910
BmrFI CCNGG 3 cut(s) 245, 672, 819
BmsI GCATC 1 cut(s) 622
Bpu10I CCTNAGC 1 cut(s) 844
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 1546
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 112, 243
BsaXI ACNNNNNCTCC 2 cut(s) 1246, 1276
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 1057
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 502, 1087
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 245, 672, 819
BseDI CCNNGG 2 cut(s) 112, 243
BseGI GGATG 2 cut(s) 241, 1163
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 824, 1057
BseMI GCAATG 2 cut(s) 502, 1087
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 1566
BseXI GCAGC 2 cut(s) 1155, 1337
BshFI GGCC 2 cut(s) 351, 992
BshNI GGYRCC 2 cut(s) 482, 908
BsiHKCI CYCGRG 1 cut(s) 1447
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 824, 1057
BsmAI GTCTC 1 cut(s) 743
BsnI GGCC 2 cut(s) 351, 992
BsoBI CYCGRG 1 cut(s) 1447
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 1566
Bsp143I GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
BspACI CCGC 3 cut(s) 666, 813, 945
BspANI GGCC 2 cut(s) 351, 992
BspCNI CTCAG 1 cut(s) 74
BspLI GGNNCC 6 cut(s) 119, 306, 388, 484, 593, 910
BspMAI CTGCAG 1 cut(s) 1145
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 650
BspT107I GGYRCC 2 cut(s) 482, 908
BsrDI GCAATG 2 cut(s) 502, 1087
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 112, 243
BssMI GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 3 cut(s) 245, 672, 819
Bst4CI ACNGT 5 cut(s) 196, 737, 761, 1258, 1357
BstBAI YACGTR 1 cut(s) 1546
BstBI TTCGAA 1 cut(s) 650
BstDEI CTNAG 4 cut(s) 61, 309, 844, 1190
BstF5I GGATG 2 cut(s) 241, 1163
BstKTI GATC 6 cut(s) 139, 208, 381, 413, 1036, 1196
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
BstMWI GCNNNNNNNGC 1 cut(s) 840
BstNI CCWGG 3 cut(s) 245, 672, 819
BstNSI RCATGY 2 cut(s) 1235, 1317
BstSCI CCNGG 3 cut(s) 243, 670, 817
BstSFI CTRYAG 1 cut(s) 1141
BstSLI GKGCMC 1 cut(s) 1566
BstV1I GCAGC 2 cut(s) 1155, 1337
BstX2I RGATCY 2 cut(s) 378, 1193
BstYI RGATCY 2 cut(s) 378, 1193
BsuRI GGCC 2 cut(s) 351, 992
BtrI CACGTC 1 cut(s) 1438
BtsCI GGATG 2 cut(s) 241, 1163
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 1 cut(s) 1134
BveI ACCTGC 1 cut(s) 818
Cfr13I GGNCC 2 cut(s) 350, 815
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 3 cut(s) 65, 131, 1422
CviAII CATG 6 cut(s) 522, 701, 824, 1047, 1232, 1314
CviQI GTAC 3 cut(s) 65, 131, 1422
DdeI CTNAG 4 cut(s) 61, 309, 844, 1190
DpnI GATC 6 cut(s) 138, 207, 380, 412, 1035, 1195
DpnII GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
DraIII CACNNNGTG 1 cut(s) 1438
EaeI YGGCCR 1 cut(s) 990
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 815
Eco57I CTGAAG 4 cut(s) 162, 350, 448, 1047
Eco88I CYCGRG 1 cut(s) 1447
EcoRII CCWGG 3 cut(s) 243, 670, 817
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 6 cut(s) 525, 704, 827, 1050, 1235, 1317
FatI CATG 6 cut(s) 521, 700, 823, 1046, 1231, 1313
FauI CCCGC 1 cut(s) 938
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 2 cut(s) 1144, 1326
FokI GGATG 2 cut(s) 248, 1170
Fsp4HI GCNGC 2 cut(s) 1144, 1326
FspBI CTAG 3 cut(s) 113, 125, 1199
GluI GCNGC 2 cut(s) 1144, 1326
HaeIII GGCC 2 cut(s) 351, 992
HapII CCGG 1 cut(s) 348
Hin1II CATG 6 cut(s) 525, 704, 827, 1050, 1235, 1317
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 3 cut(s) 645, 841, 1218
HinfI GANTC 5 cut(s) 536, 652, 696, 972, 1040
HpaI GTTAAC 1 cut(s) 532
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 140, 764, 1035
Hpy166II GTNNAC 5 cut(s) 447, 532, 580, 1186, 1432
Hpy188I TCNGA 9 cut(s) 330, 364, 415, 467, 596, 726, 877, 971, 1157
Hpy188III TCNNGA 4 cut(s) 376, 1037, 1163, 1433
Hpy8I GTNNAC 5 cut(s) 447, 532, 580, 1186, 1432
Hpy99I CGWCG 1 cut(s) 1439
HpyAV CCTTC 5 cut(s) 103, 156, 262, 467, 495
HpyCH4III ACNGT 5 cut(s) 196, 737, 761, 1258, 1357
HpyCH4IV ACGT 5 cut(s) 1182, 1420, 1437, 1538, 1545
HpyCH4V TGCA 9 cut(s) 4, 357, 525, 564, 613, 959, 1143, 1498, 1572
HpyF10VI GCNNNNNNNGC 1 cut(s) 840
HpyF3I CTNAG 4 cut(s) 61, 309, 844, 1190
HpySE526I ACGT 5 cut(s) 1182, 1420, 1437, 1538, 1545
Hsp92II CATG 6 cut(s) 525, 704, 827, 1050, 1235, 1317
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
LmnI GCTCC 2 cut(s) 215, 848
Lsp1109I GCAGC 2 cut(s) 1155, 1337
LweI GCATC 1 cut(s) 622
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 3 cut(s) 113, 125, 1199
MaeII ACGT 5 cut(s) 1182, 1420, 1437, 1538, 1545
MaeIII GTNAC 8 cut(s) 31, 107, 146, 190, 367, 547, 661, 703
MalI GATC 6 cut(s) 138, 207, 380, 412, 1035, 1195
MboI GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
MboII GAAGA 3 cut(s) 131, 270, 547
MfeI CAATTG 4 cut(s) 5, 1276, 1392, 1567
MflI RGATCY 2 cut(s) 378, 1193
MhlI GDGCHC 1 cut(s) 1566
MlsI TGGCCA 1 cut(s) 992
MluNI TGGCCA 1 cut(s) 992
MnlI CCTC 9 cut(s) 94, 224, 281, 409, 582, 862, 1244, 1319, 1468
Mox20I TGGCCA 1 cut(s) 992
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 1258
MscI TGGCCA 1 cut(s) 992
MseI TTAA 6 cut(s) 531, 923, 1175, 1241, 1535, 1576
Msp20I TGGCCA 1 cut(s) 992
MspA1I CMGCKG 2 cut(s) 1067, 1328
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 3 cut(s) 245, 672, 819
MunI CAATTG 4 cut(s) 5, 1276, 1392, 1567
MvaI CCWGG 3 cut(s) 245, 672, 819
MwoI GCNNNNNNNGC 1 cut(s) 840
NdeII GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
NlaIII CATG 6 cut(s) 525, 704, 827, 1050, 1235, 1317
NlaIV GGNNCC 6 cut(s) 119, 306, 388, 484, 593, 910
NmuCI GTSAC 6 cut(s) 107, 146, 367, 547, 661, 703
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 2 cut(s) 1235, 1317
NspV TTCGAA 1 cut(s) 650
PciI ACATGT 1 cut(s) 1313
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 1258
PfeI GAWTC 5 cut(s) 536, 652, 696, 972, 1040
PflFI GACNNNGTC 1 cut(s) 819
PflMI CCANNNNNTGG 1 cut(s) 824
PkrI GCNGC 2 cut(s) 1145, 1327
Ppu21I YACGTR 1 cut(s) 1546
PscI ACATGT 1 cut(s) 1313
Psp6I CCWGG 3 cut(s) 243, 670, 817
PspGI CCWGG 3 cut(s) 243, 670, 817
PspN4I GGNNCC 6 cut(s) 119, 306, 388, 484, 593, 910
PspPI GGNCC 2 cut(s) 350, 815
PstI CTGCAG 1 cut(s) 1145
PsuI RGATCY 2 cut(s) 378, 1193
PsyI GACNNNGTC 1 cut(s) 819
PvuII CAGCTG 2 cut(s) 1067, 1328
RsaI GTAC 3 cut(s) 66, 132, 1423
RsaNI GTAC 3 cut(s) 65, 131, 1422
SaqAI TTAA 6 cut(s) 531, 923, 1175, 1241, 1535, 1576
SatI GCNGC 2 cut(s) 1144, 1326
Sau3AI GATC 6 cut(s) 136, 205, 378, 410, 1033, 1193
Sau96I GGNCC 2 cut(s) 350, 815
ScaI AGTACT 1 cut(s) 66
ScrFI CCNGG 3 cut(s) 245, 672, 819
SduI GDGCHC 1 cut(s) 1566
SexAI ACCWGGT 1 cut(s) 817
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 1141
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SpeI ACTAGT 1 cut(s) 124
SsiI CCGC 3 cut(s) 666, 813, 945
SspI AATATT 3 cut(s) 78, 721, 982
SspMI CTAG 3 cut(s) 113, 125, 1199
StyD4I CCNGG 3 cut(s) 243, 670, 817
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 5 cut(s) 196, 737, 761, 1258, 1357
TaiI ACGT 5 cut(s) 1185, 1423, 1440, 1541, 1548
TaqI TCGA 5 cut(s) 154, 650, 767, 793, 1236
TatI WGTACW 2 cut(s) 64, 130
TfiI GAWTC 5 cut(s) 536, 652, 696, 972, 1040
Tru1I TTAA 6 cut(s) 531, 923, 1175, 1241, 1535, 1576
Tru9I TTAA 6 cut(s) 531, 923, 1175, 1241, 1535, 1576
TscAI CASTG 1 cut(s) 1134
TseFI GTSAC 6 cut(s) 107, 146, 367, 547, 661, 703
TseI GCWGC 2 cut(s) 1143, 1325
Tsp45I GTSAC 6 cut(s) 107, 146, 367, 547, 661, 703
TspDTI ATGAA 4 cut(s) 131, 269, 353, 1221
TspGWI ACGGA 2 cut(s) 437, 933
TspRI CASTG 1 cut(s) 1134
Tth111I GACNNNGTC 1 cut(s) 819
Van91I CCANNNNNTGG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 815
XapI RAATTY 5 cut(s) 340, 451, 856, 1133, 1334
XceI RCATGY 2 cut(s) 1235, 1317
XcmI CCANNNNNNNNNTGG 1 cut(s) 1460
XmaJI CCTAGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 1258
XspI CTAG 3 cut(s) 113, 125, 1199
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.