Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004511.1

Orthogroup ID

OG0010715

Physical Location & Seq

Genomic Coordinates Reverse (-)

24219 .. 24962

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004511.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtatttactcaatgaaggtgacgactgtatttcgatagtaagtgggtcaaggaatgttcaagctagcgatataacctgcggaccaggtcatggaatcagtattggaagcttaggagctgaaaattcagaagctcaggtttccgatgtggtagtaagtacagcgaaccttataggcaccactaatggattaagaatcaagacttggcaaggaggttctggttatgcaaaaaacatcagattcgaaaatgttctaatgcacaatgtcactaatcccataatcatagatcaacattactgtgatcaggaaaaaccatgccaagatcaggcttcagctgtaaaagtaagcggagtggtataccaaaatgtgaaaggcacaagtgcttctaaagtggcggtaaatttcgattgcagtgagcgcttcggatgtcaagagattttggtgcaagacgtgaacatagtacctctaaacgatgaaggaattacgacagcttcttgtcagaatgttggattacgcgatagagggatagtttcaccaaaatgctcttcccaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

185

Amino Acids

19.68

Weight (kDa)

5.11

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07970
fragaria_vesca	FvH4_7g01140 FvH4_7g01140
malus_domestica	MD02G1309400.v1.1 MD07G1011600.v1.1
prunus_persica	Prupe.2G014800_v2.0.a1
pyrus_communis	pycom02g26060 pycom07g00970
rosa_chinensis	RchiOBHm_Chr1g0316321
rosa_laevigata	RLG00000030679
rosa_multiflora	Rmu_sc0002531.1_g000005 Rmu_sc0004511.1_g000005
rosa_roxburghii	Rroxscaffold_4G00331050
rosa_rugosa	Rorug01G0009700 Rorug01G0009700
rosa_samantha	Rh1AG019500 Rh1BG014600 Rh1CG017100 Rh1DG014500
rosa_wichuraiana	Rw1G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	81, 348, 395
AcsI	RAATTY	2 cut(s)	124, 400
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	160, 462
AfeI	AGCGCT	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	92, 325
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	3 cut(s)	187, 219, 529
AluBI	AGCT	6 cut(s)	65, 111, 119, 134, 335, 491
AluI	AGCT	6 cut(s)	65, 111, 119, 134, 335, 491
Aor51HI	AGCGCT	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	124, 400
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	32, 525
AsuII	TTCGAA	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	301
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	421
BfuAI	ACCTGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	69
Bpu10I	CCTNAGC	2 cut(s)	112, 135
Bpu14I	TTCGAA	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 325
BseBI	CCWGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	92, 325
BseMII	CTCAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	92, 325
Bsp119I	TTCGAA	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	286, 301, 322
BspACI	CCGC	3 cut(s)	81, 348, 395
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	176
BssMI	GATC	3 cut(s)	286, 301, 322
BssNAI	GTATAC	1 cut(s)	358
Bst1107I	GTATAC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	29, 299
Bst6I	CTCTTC	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	112, 135
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	289, 304, 325
BstMBI	GATC	3 cut(s)	286, 301, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	516
BstZ17I	GTATAC	1 cut(s)	358
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	159, 461
CviAII	CATG	2 cut(s)	92, 315
CviJI	RGCY	7 cut(s)	65, 111, 119, 134, 329, 335, 491
CviKI_1	RGCY	7 cut(s)	65, 111, 119, 134, 329, 335, 491
CviQI	GTAC	2 cut(s)	159, 461
DdeI	CTNAG	2 cut(s)	112, 135
DpnI	GATC	3 cut(s)	288, 303, 324
DpnII	GATC	3 cut(s)	286, 301, 322
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	95, 318
FaiI	YATR	9 cut(s)	74, 93, 173, 225, 278, 284, 316, 358, 458
FatI	CATG	2 cut(s)	91, 314
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	357
FokI	GGATG	1 cut(s)	438
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	421
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	95, 318
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	3 cut(s)	96, 195, 240
HphI	GGTGA	2 cut(s)	32, 525
Hpy166II	GTNNAC	2 cut(s)	358, 454
Hpy188I	TCNGA	5 cut(s)	130, 145, 239, 425, 501
Hpy188III	TCNNGA	3 cut(s)	199, 305, 431
Hpy8I	GTNNAC	2 cut(s)	358, 454
HpyAV	CCTTC	2 cut(s)	11, 470
HpyCH4III	ACNGT	2 cut(s)	29, 299
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	227, 259, 411, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	2 cut(s)	112, 135
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	95, 318
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	286, 301, 322
LguI	GCTCTTC	1 cut(s)	550
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	72, 91, 99, 122, 204, 290, 311
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	20, 265
MalI	GATC	3 cut(s)	288, 303, 324
MboI	GATC	3 cut(s)	286, 301, 322
MboII	GAAGA	1 cut(s)	537
MluCI	AATT	3 cut(s)	124, 400, 480
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	3 cut(s)	206, 474, 515
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	2 cut(s)	297, 538
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	3 cut(s)	286, 301, 322
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	95, 318
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	20, 265
NspV	TTCGAA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	96, 195, 240
PflFI	GACNNNGTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	160, 462
RsaNI	GTAC	2 cut(s)	159, 461
RseI	CAYNNNNRTG	2 cut(s)	297, 538
SapI	GCTCTTC	1 cut(s)	550
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	3 cut(s)	286, 301, 322
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	87
SexAI	ACCWGGT	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	297, 538
Sse9I	AATT	3 cut(s)	124, 400, 480
SsiI	CCGC	3 cut(s)	81, 348, 395
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	29, 299
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	35, 243, 405
TasI	AATT	3 cut(s)	124, 400, 480
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	96, 195, 240
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	20, 265
Tsp45I	GTSAC	2 cut(s)	20, 265
TspDTI	ATGAA	2 cut(s)	30, 489
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	124, 400
XmiI	GTMKAC	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.