Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010715

Physical Location & Seq

Genomic Coordinates Forward (+)

2848197 .. 2851926

Gene Structure 3730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG017100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCAATATTCTTCATCTCAAATCCATTTTCTGTCACTATTCCTCCTTCTCATCATTGTACCTTCATATTTTTCCTTCCCTCTTGGCCATAACCATAACCCAGAGGAGCCACCTGTACTTGATCATCATCAAAAAACCTATACTGGTCATAATTTTTTGAGACCCTACCCTACAATATTAAGGACAAGCAGGAGGGAGCTTATTACAGCCAGTGCTTCATCCAAGGTTGTTTTTAATGTGCATGATTTTGGAGCTCAAGCAAATGGAGGAGATGATACCAAGGCATTTAGGAACGCATGGAAGAAGGCATGCTCAAATTCTGAAGGAATAACTGTTGAGCTCGTGGTCCCTAAGAACAGAAACTATCACATCAAACCAATTACATTCTCTGGTCCTTGCAAATCTCAGGTCACCTTTAAGATTTATGGAACGATCAATGCATCACCATTTCTATCGGATTACGAAAGGGACAGTAGCCATTGGATTATGTTCGAGAATTTGCAGAACTTTAAAGTTGATGGTGCTGGCACTGGCATCATCAATGGCAATGGAAGGAAATGGTGGGAGAATTCTTGCAAAGTTAACGAGTCCCTTCCTTGCACGAGCGCACCAACTGCTGTGACTTTCTATCAGTGCAATAATTTGGAGGTAGCAAATCTGAGGTTCCAGAATGCACAGAGAATGCATCTGACGTTTCAGAAATGTGCGCTTGTAAAAGCTTTGAATCTCATTATAACAGCACCAGGGAACAGTCCTAACACCGATGGAATCCATGTCACTGAAACACAAGATATTCGCATAAACAGCTGCCGCATTAGGACAGGTGACGACTGTATTTCGATAGTAAGTGGGTCAAGGAATGTTCAAGCTAGCGATATAACCTGCGGACCAGGTCATGGAATCAGTATTGGAAGCTTAGGAGCTGAAAATTCAGAAGCTCAGGTTTCCGATGTGGTAGTAAGTACAGCGAACCTTATAGGCACCACTAATGGATTAAGAATCAAGACTTGGCAAGGAGGTTCTGGTTATGCAAAAAACATCAGATTCGAAAATGTTCTAATGCACAATGTCACTAATCCCATAATCATAGATCAACATTACTGTGATCAGGAAAAACCATGCCAAGATCAGGTAATGCTACCTTCAGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005975 GO:0005976 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010393 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019953 GO:0022411 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044277 GO:0044703 GO:0045229 GO:0045488 GO:0045490 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

384

Amino Acids

42.51

Weight (kDa)

7.61

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	109 - 377	2.9e-84	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07970
fragaria_vesca	FvH4_7g01140 FvH4_7g01140
malus_domestica	MD02G1309400.v1.1 MD07G1011600.v1.1
prunus_persica	Prupe.2G014800_v2.0.a1
pyrus_communis	pycom02g26060 pycom07g00970
rosa_chinensis	RchiOBHm_Chr1g0316321
rosa_laevigata	RLG00000030679
rosa_multiflora	Rmu_sc0002531.1_g000005 Rmu_sc0004511.1_g000005
rosa_roxburghii	Rroxscaffold_4G00331050
rosa_rugosa	Rorug01G0009700 Rorug01G0009700
rosa_samantha	Rh1AG019500 Rh1BG014600 Rh1CG017100 Rh1DG014500
rosa_wichuraiana	Rw1G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	890
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	896
AciI	CCGC	2 cut(s)	811, 885
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	4 cut(s)	316, 496, 568, 928
AcuI	CTGAAG	2 cut(s)	342, 1128
AfaI	GTAC	3 cut(s)	60, 117, 964
AfiI	CCNNNNNNNGG	2 cut(s)	896, 1129
AgsI	TTSAA	2 cut(s)	724, 866
AjnI	CCWGG	2 cut(s)	742, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	991, 1023
AluBI	AGCT	9 cut(s)	199, 254, 340, 719, 807, 869, 915, 923, 938
AluI	AGCT	9 cut(s)	199, 254, 340, 719, 807, 869, 915, 923, 938
Alw21I	GWGCWC	2 cut(s)	256, 342
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	807
ApoI	RAATTY	4 cut(s)	316, 496, 568, 928
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	2 cut(s)	608, 709
AspS9I	GGNCC	3 cut(s)	346, 392, 887
AsuHPI	GGTGA	3 cut(s)	403, 435, 836
AsuII	TTCGAA	1 cut(s)	1047
AsuNHI	GCTAGC	1 cut(s)	869
AvaII	GGWCC	3 cut(s)	346, 392, 887
BalI	TGGCCA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	256, 342
BauI	CACGAG	2 cut(s)	341, 601
Bbv12I	GWGCWC	2 cut(s)	256, 342
BbvI	GCAGC	1 cut(s)	794
BccI	CCATC	2 cut(s)	512, 758
BciT130I	CCWGG	2 cut(s)	744, 891
BclI	TGATCA	2 cut(s)	121, 1105
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	890
BisI	GCNGC	2 cut(s)	808, 811
BlsI	GCNGC	2 cut(s)	809, 812
Bme1390I	CCNGG	2 cut(s)	744, 891
Bme18I	GGWCC	3 cut(s)	346, 392, 887
BmgT120I	GGNCC	3 cut(s)	346, 392, 887
BmiI	GGNNCC	4 cut(s)	108, 348, 665, 982
BmrFI	CCNGG	2 cut(s)	744, 891
BmsI	GCATC	3 cut(s)	449, 543, 694
BmtI	GCTAGC	1 cut(s)	873
Bpu10I	CCTNAGC	2 cut(s)	916, 939
Bpu14I	TTCGAA	1 cut(s)	1047
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	222, 279, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	896, 1129
Bse1I	ACTGG	3 cut(s)	148, 210, 535
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	744, 891
BseDI	CCNNGG	3 cut(s)	222, 279, 743
BseGI	GGATG	1 cut(s)	218
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	896, 1129
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	419, 650, 953
BseNI	ACTGG	3 cut(s)	148, 210, 535
BseRI	GAGGAG	2 cut(s)	119, 282
BseXI	GCAGC	1 cut(s)	794
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	980
BsiHKAI	GWGCWC	2 cut(s)	256, 342
BslFI	GGGAC	3 cut(s)	332, 482, 574
BslI	CCNNNNNNNGG	2 cut(s)	896, 1129
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	3 cut(s)	332, 482, 574
BsmI	GAATGC	2 cut(s)	676, 687
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	1047
Bsp1286I	GDGCHC	2 cut(s)	256, 342
Bsp143I	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
BspACI	CCGC	2 cut(s)	811, 885
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	418, 651, 952
BspLI	GGNNCC	4 cut(s)	108, 348, 665, 982
BspMI	ACCTGC	1 cut(s)	890
BspOI	GCTAGC	1 cut(s)	873
BspT104I	TTCGAA	1 cut(s)	1047
BspT107I	GGYRCC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	148, 210, 535
BssECI	CCNNGG	3 cut(s)	222, 279, 743
BssMI	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
BssSI	CACGAG	2 cut(s)	341, 601
BssT1I	CCWWGG	2 cut(s)	222, 279
Bst2BI	CACGAG	2 cut(s)	341, 601
Bst2UI	CCWGG	2 cut(s)	744, 891
Bst4CI	ACNGT	5 cut(s)	334, 473, 752, 833, 1103
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	1047
BstC8I	GCNNGC	3 cut(s)	310, 526, 871
BstDEI	CTNAG	5 cut(s)	351, 405, 659, 916, 939
BstEII	GGTNACC	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	608, 709
BstKTI	GATC	5 cut(s)	124, 435, 1093, 1108, 1129
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 804
BstNI	CCWGG	2 cut(s)	744, 891
BstNSI	RCATGY	1 cut(s)	312
BstPI	GGTNACC	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	742, 889
BstV1I	GCAGC	1 cut(s)	794
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	4 cut(s)	217, 528, 638, 777
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	3 cut(s)	310, 526, 871
CfoI	GCGC	2 cut(s)	608, 709
Cfr13I	GGNCC	3 cut(s)	346, 392, 887
CsiI	ACCWGGT	1 cut(s)	889
Csp6I	GTAC	3 cut(s)	59, 116, 963
CviAII	CATG	6 cut(s)	242, 297, 309, 773, 896, 1119
CviQI	GTAC	3 cut(s)	59, 116, 963
DdeI	CTNAG	5 cut(s)	351, 405, 659, 916, 939
DpnI	GATC	5 cut(s)	123, 434, 1092, 1107, 1128
DpnII	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	85
Ecl136II	GAGCTC	2 cut(s)	254, 340
Eco130I	CCWWGG	2 cut(s)	222, 279
Eco24I	GRGCYC	2 cut(s)	256, 342
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	3 cut(s)	346, 392, 887
Eco53kI	GAGCTC	2 cut(s)	254, 340
Eco57I	CTGAAG	2 cut(s)	342, 1128
Eco91I	GGTNACC	1 cut(s)	409
EcoICRI	GAGCTC	2 cut(s)	254, 340
EcoO65I	GGTNACC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	742, 889
EcoT14I	CCWWGG	2 cut(s)	222, 279
EcoT22I	ATGCAT	2 cut(s)	442, 687
EcoT38I	GRGCYC	2 cut(s)	256, 342
ErhI	CCWWGG	2 cut(s)	222, 279
FaeI	CATG	6 cut(s)	245, 300, 312, 776, 899, 1122
FaqI	GGGAC	3 cut(s)	332, 482, 574
FatI	CATG	6 cut(s)	241, 296, 308, 772, 895, 1118
FbaI	TGATCA	2 cut(s)	121, 1105
Fnu4HI	GCNGC	2 cut(s)	808, 811
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	256, 342
Fsp4HI	GCNGC	2 cut(s)	808, 811
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	2 cut(s)	607, 708
GluI	GCNGC	2 cut(s)	808, 811
HaeIII	GGCC	1 cut(s)	87
HhaI	GCGC	2 cut(s)	608, 709
Hin1II	CATG	6 cut(s)	245, 300, 312, 776, 899, 1122
Hin6I	GCGC	2 cut(s)	606, 707
HinP1I	GCGC	2 cut(s)	606, 707
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	717, 913
HinfI	GANTC	6 cut(s)	587, 724, 768, 900, 999, 1044
HpaI	GTTAAC	1 cut(s)	583
HphI	GGTGA	3 cut(s)	403, 435, 836
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	9 cut(s)	322, 457, 660, 690, 699, 934, 949, 1043, 1147
Hpy188III	TCNNGA	4 cut(s)	493, 667, 1003, 1109
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	8 cut(s)	56, 72, 85, 298, 317, 546, 602, 1152
HpyCH4III	ACNGT	5 cut(s)	334, 473, 752, 833, 1103
HpyCH4IV	ACGT	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 804
HpyF3I	CTNAG	5 cut(s)	351, 405, 659, 916, 939
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	6 cut(s)	245, 300, 312, 776, 899, 1122
HspAI	GCGC	2 cut(s)	606, 707
Ksp22I	TGATCA	2 cut(s)	121, 1105
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
LmnI	GCTCC	4 cut(s)	106, 196, 251, 920
Lsp1109I	GCAGC	1 cut(s)	794
LweI	GCATC	3 cut(s)	449, 543, 694
MabI	ACCWGGT	1 cut(s)	889
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	6 cut(s)	33, 409, 619, 775, 824, 1069
MalI	GATC	5 cut(s)	123, 434, 1092, 1107, 1128
MboI	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
MboII	GAAGA	2 cut(s)	3, 313
MhlI	GDGCHC	2 cut(s)	256, 342
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	7 cut(s)	151, 316, 378, 496, 568, 640, 928
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	8 cut(s)	53, 90, 97, 186, 260, 640, 654, 1010
Mox20I	TGGCCA	1 cut(s)	87
Mph1103I	ATGCAT	2 cut(s)	442, 687
MroXI	GAANNNNTTC	1 cut(s)	1053
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	6 cut(s)	179, 234, 417, 510, 582, 995
MslI	CAYNNNNRTG	1 cut(s)	1101
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	744, 891
Mva1269I	GAATGC	2 cut(s)	676, 687
MvaI	CCWGG	2 cut(s)	744, 891
MwoI	GCNNNNNNNGC	2 cut(s)	614, 804
NdeII	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	6 cut(s)	245, 300, 312, 776, 899, 1122
NlaIV	GGNNCC	4 cut(s)	108, 348, 665, 982
NmuCI	GTSAC	6 cut(s)	33, 409, 619, 775, 824, 1069
NsiI	ATGCAT	2 cut(s)	442, 687
NspI	RCATGY	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	1047
PaeI	GCATGC	1 cut(s)	312
PctI	GAATGC	2 cut(s)	676, 687
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	5 cut(s)	724, 768, 900, 999, 1044
PflFI	GACNNNGTC	1 cut(s)	891
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	2 cut(s)	809, 812
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	734
Psp124BI	GAGCTC	2 cut(s)	256, 342
Psp6I	CCWGG	2 cut(s)	742, 889
PspEI	GGTNACC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	742, 889
PspN4I	GGNNCC	4 cut(s)	108, 348, 665, 982
PspPI	GGNCC	3 cut(s)	346, 392, 887
PsyI	GACNNNGTC	1 cut(s)	891
PvuII	CAGCTG	1 cut(s)	807
RsaI	GTAC	3 cut(s)	60, 117, 964
RsaNI	GTAC	3 cut(s)	59, 116, 963
RseI	CAYNNNNRTG	1 cut(s)	1101
SacI	GAGCTC	2 cut(s)	256, 342
SaqAI	TTAA	6 cut(s)	179, 234, 417, 510, 582, 995
SatI	GCNGC	2 cut(s)	808, 811
Sau3AI	GATC	5 cut(s)	121, 432, 1090, 1105, 1126
Sau96I	GGNCC	3 cut(s)	346, 392, 887
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	744, 891
SduI	GDGCHC	2 cut(s)	256, 342
SexAI	ACCWGGT	1 cut(s)	889
SfaNI	GCATC	3 cut(s)	449, 543, 694
SfuI	TTCGAA	1 cut(s)	1047
SinI	GGWCC	3 cut(s)	346, 392, 887
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	7 cut(s)	151, 316, 378, 496, 568, 640, 928
SsiI	CCGC	2 cut(s)	811, 885
SspI	AATATT	2 cut(s)	8, 177
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	2 cut(s)	256, 342
StyD4I	CCNGG	2 cut(s)	742, 889
StyI	CCWWGG	2 cut(s)	222, 279
TaaI	ACNGT	5 cut(s)	334, 473, 752, 833, 1103
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	3 cut(s)	492, 839, 1047
TasI	AATT	7 cut(s)	151, 316, 378, 496, 568, 640, 928
TatI	WGTACW	2 cut(s)	115, 962
TauI	GCSGC	1 cut(s)	813
TfiI	GAWTC	5 cut(s)	724, 768, 900, 999, 1044
Tru1I	TTAA	6 cut(s)	179, 234, 417, 510, 582, 995
Tru9I	TTAA	6 cut(s)	179, 234, 417, 510, 582, 995
TscAI	CASTG	4 cut(s)	217, 535, 638, 784
TseFI	GTSAC	6 cut(s)	33, 409, 619, 775, 824, 1069
TseI	GCWGC	1 cut(s)	807
Tsp45I	GTSAC	6 cut(s)	33, 409, 619, 775, 824, 1069
TspDTI	ATGAA	2 cut(s)	54, 207
TspRI	CASTG	4 cut(s)	217, 535, 638, 784
Tth111I	GACNNNGTC	1 cut(s)	891
Van91I	CCANNNNNTGG	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	346, 392, 887
XapI	RAATTY	4 cut(s)	316, 496, 568, 928
XceI	RCATGY	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	2 cut(s)	442, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.