AT3G08020

PHD finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003121
Physical Location & Seq
Reverse (-)
2557437 .. 2561848
4412 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08020.1

Sequence Viewer

Length: 2340 bp
ATGGCCTTTCACGTAGCTTGTCCAATTACATGTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCCTGCTGTTTCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCTCAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCAAACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGCTTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGACTGTGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCATTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGATCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACATCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCACAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATACTTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAAGGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGTGCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAAGCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGATGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTTAAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGATGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGTGGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGCTAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGAGAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATCGGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACACAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAATAAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGAAAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAGTGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTTGGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTTTGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCAGTCACTCAGTTCCCTGCTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTACAGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGACATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGATCAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAGCTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGATTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAAACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTTCTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATACCGCAAAAGCAAAAGAGGTCAAGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD Y_phosphatase2

Protein Analysis

779

Amino Acids

86.27

Weight (kDa)

8.96

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 203 - 246 3.3e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 3 cut(s) 275, 2302, 2312
AclWI GGATC 7 cut(s) 78, 134, 147, 626, 1050, 1354, 2191
AcsI RAATTY 2 cut(s) 1437, 1916
AcuI CTGAAG 7 cut(s) 296, 1031, 1229, 1347, 1775, 1809, 1995
AcyI GRCGYC 1 cut(s) 1357
AfaI GTAC 2 cut(s) 175, 524
AfiI CCNNNNNNNGG 5 cut(s) 600, 779, 1196, 1197, 1940
AflIII ACRYGT 2 cut(s) 29, 301
AjnI CCWGG 1 cut(s) 772
AleI CACNNNNGTG 1 cut(s) 756
AloI GAACNNNNNNTCC 4 cut(s) 162, 194, 616, 648
Alw26I GTCTC 5 cut(s) 310, 1348, 1686, 2017, 2223
AlwI GGATC 7 cut(s) 78, 134, 147, 626, 1050, 1354, 2191
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 5 cut(s) 3, 418, 719, 781, 2002
ApeKI GCWGC 7 cut(s) 323, 341, 668, 909, 1118, 1121, 1832
ApoI RAATTY 2 cut(s) 1437, 1916
AseI ATTAAT 1 cut(s) 1623
Asp718I GGTACC 1 cut(s) 173
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 1 cut(s) 1203
AspS9I GGNCC 3 cut(s) 719, 1187, 2002
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 6 cut(s) 419, 479, 1048, 1507, 1872, 2078
AsuII TTCGAA 1 cut(s) 1661
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 1187
AvrII CCTAGG 1 cut(s) 457
AxyI CCTNAGG 3 cut(s) 55, 195, 1574
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 1786, 1818
BbsI GAAGAC 1 cut(s) 2067
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 7 cut(s) 310, 328, 655, 896, 1105, 1108, 1819
BccI CCATC 6 cut(s) 236, 941, 980, 1883, 2110, 2255
BceAI ACGGC 3 cut(s) 603, 1002, 1498
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 1561
BclI TGATCA 1 cut(s) 1729
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 5 cut(s) 310, 1348, 1686, 2017, 2223
BfaI CTAG 6 cut(s) 458, 1107, 1293, 1364, 1635, 2255
BfmI CTRYAG 1 cut(s) 1428
BfoI RGCGCY 1 cut(s) 1204
BfuI GTATCC 1 cut(s) 1561
BglI GCCNNNNNGGC 1 cut(s) 426
BglII AGATCT 1 cut(s) 1758
BisI GCNGC 7 cut(s) 324, 342, 669, 910, 1119, 1122, 1833
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 7 cut(s) 325, 343, 670, 911, 1120, 1123, 1834
Bme1390I CCNGG 2 cut(s) 602, 774
Bme18I GGWCC 1 cut(s) 1187
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 719, 1187, 2002
BmiI GGNNCC 6 cut(s) 82, 141, 175, 192, 1189, 1323
BmrFI CCNGG 2 cut(s) 602, 774
BmrI ACTGGG 1 cut(s) 1746
BmsI GCATC 8 cut(s) 483, 655, 737, 811, 1042, 1844, 2110, 2277
BmuI ACTGGG 1 cut(s) 1746
BpiI GAAGAC 1 cut(s) 2067
BpmI CTGGAG 1 cut(s) 2247
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 1661
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 1357
BsaI GGTCTC 1 cut(s) 2017
BsaJI CCNNGG 5 cut(s) 76, 457, 772, 1018, 2179
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 5 cut(s) 600, 779, 1196, 1197, 1940
Bse1I ACTGG 2 cut(s) 1741, 2132
Bse21I CCTNAGG 3 cut(s) 55, 195, 1574
Bse3DI GCAATG 2 cut(s) 46, 934
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 5 cut(s) 76, 457, 772, 1018, 2179
BseGI GGATG 7 cut(s) 498, 691, 1057, 1867, 1871, 2125, 2234
BseLI CCNNNNNNNGG 5 cut(s) 600, 779, 1196, 1197, 1940
BseMI GCAATG 2 cut(s) 46, 934
BseMII CTCAG 7 cut(s) 227, 305, 336, 776, 1341, 1835, 1939
BseNI ACTGG 2 cut(s) 1741, 2132
BseRI GAGGAG 3 cut(s) 140, 201, 1154
BseXI GCAGC 7 cut(s) 310, 328, 655, 896, 1105, 1108, 1819
BseYI CCCAGC 1 cut(s) 927
BsgI GTGCAG 1 cut(s) 463
BshFI GGCC 5 cut(s) 5, 420, 721, 783, 2004
BshNI GGYRCC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 426, 601
BslFI GGGAC 2 cut(s) 576, 755
BslI CCNNNNNNNGG 5 cut(s) 600, 779, 1196, 1197, 1940
BsmAI GTCTC 5 cut(s) 310, 1348, 1686, 2017, 2223
BsmBI CGTCTC 1 cut(s) 1348
BsmFI GGGAC 2 cut(s) 576, 755
BsmI GAATGC 1 cut(s) 1585
BsnI GGCC 5 cut(s) 5, 420, 721, 783, 2004
Bso31I GGTCTC 1 cut(s) 2017
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 1661
Bsp1286I GDGCHC 1 cut(s) 553
Bsp19I CCATGG 1 cut(s) 2179
BspACI CCGC 3 cut(s) 275, 2302, 2312
BspANI GGCC 5 cut(s) 5, 420, 721, 783, 2004
BspCNI CTCAG 7 cut(s) 226, 304, 337, 777, 1342, 1834, 1938
BspHI TCATGA 1 cut(s) 1549
BspLI GGNNCC 6 cut(s) 82, 141, 175, 192, 1189, 1323
BspPI GGATC 7 cut(s) 78, 134, 147, 626, 1050, 1354, 2191
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 1661
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 2017
BsrDI GCAATG 2 cut(s) 46, 934
BsrI ACTGG 2 cut(s) 1741, 2132
BssECI CCNNGG 5 cut(s) 76, 457, 772, 1018, 2179
BssNI GRCGYC 1 cut(s) 1357
BssT1I CCWWGG 2 cut(s) 457, 2179
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 8 cut(s) 178, 220, 334, 512, 769, 2066, 2212, 2297
Bst6I CTCTTC 2 cut(s) 315, 1279
BstACI GRCGYC 1 cut(s) 1357
BstAPI GCANNNNNTGC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 1661
BstC8I GCNNGC 2 cut(s) 1290, 1544
BstDSI CCRYGG 3 cut(s) 76, 1018, 2179
BstENI CCTNNNNNAGG 1 cut(s) 1938
BstF5I GGATG 7 cut(s) 498, 691, 1057, 1867, 1871, 2125, 2234
BstH2I RGCGCY 1 cut(s) 1204
BstHHI GCGC 1 cut(s) 1203
BstMAI GTCTC 5 cut(s) 310, 1348, 1686, 2017, 2223
BstMWI GCNNNNNNNGC 4 cut(s) 281, 426, 450, 864
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 3 cut(s) 33, 1017, 1292
BstSCI CCNGG 2 cut(s) 600, 772
BstSFI CTRYAG 1 cut(s) 1428
BstV1I GCAGC 7 cut(s) 310, 328, 655, 896, 1105, 1108, 1819
BstV2I GAAGAC 1 cut(s) 2067
BstX2I RGATCY 7 cut(s) 70, 139, 631, 1042, 1346, 1758, 2183
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 7 cut(s) 70, 139, 631, 1042, 1346, 1758, 2183
Bsu36I CCTNAGG 3 cut(s) 55, 195, 1574
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 5 cut(s) 5, 420, 721, 783, 2004
BtgI CCRYGG 3 cut(s) 76, 1018, 2179
BtsCI GGATG 7 cut(s) 498, 691, 1057, 1867, 1871, 2125, 2234
BtsIMutI CAGTG 4 cut(s) 1205, 1657, 2217, 2302
Cac8I GCNNGC 2 cut(s) 1290, 1544
CciI TCATGA 1 cut(s) 1549
CfoI GCGC 1 cut(s) 1203
Cfr13I GGNCC 3 cut(s) 719, 1187, 2002
CseI GACGC 1 cut(s) 1365
Csp6I GTAC 2 cut(s) 174, 523
CspCI CAANNNNNGTGG 4 cut(s) 515, 550, 2019, 2054
CviQI GTAC 2 cut(s) 174, 523
DraI TTTAAA 2 cut(s) 540, 1921
Eam1104I CTCTTC 2 cut(s) 315, 1279
EarI CTCTTC 2 cut(s) 315, 1279
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 457, 2179
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 2017
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 7 cut(s) 296, 1031, 1229, 1347, 1775, 1809, 1995
Eco81I CCTNAGG 3 cut(s) 55, 195, 1574
Eco88I CYCGRG 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 1938
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 457, 2179
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 457, 2179
Esp3I CGTCTC 1 cut(s) 1348
FaqI GGGAC 2 cut(s) 576, 755
FbaI TGATCA 1 cut(s) 1729
Fnu4HI GCNGC 7 cut(s) 324, 342, 669, 910, 1119, 1122, 1833
FokI GGATG 7 cut(s) 505, 678, 1064, 1858, 1874, 2132, 2221
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 7 cut(s) 324, 342, 669, 910, 1119, 1122, 1833
FspBI CTAG 6 cut(s) 458, 1107, 1293, 1364, 1635, 2255
GlaI GCGC 1 cut(s) 1202
GluI GCNGC 7 cut(s) 324, 342, 669, 910, 1119, 1122, 1833
GsaI CCCAGC 1 cut(s) 931
GsuI CTGGAG 1 cut(s) 2247
HaeII RGCGCY 1 cut(s) 1204
HaeIII GGCC 5 cut(s) 5, 420, 721, 783, 2004
HapII CCGG 2 cut(s) 426, 601
HgaI GACGC 1 cut(s) 1365
HhaI GCGC 1 cut(s) 1203
Hin1I GRCGYC 1 cut(s) 1357
Hin6I GCGC 1 cut(s) 1201
HinP1I GCGC 1 cut(s) 1201
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HindIII AAGCTT 2 cut(s) 282, 2032
HinfI GANTC 7 cut(s) 368, 761, 884, 890, 1553, 2153, 2169
HpaII CCGG 2 cut(s) 426, 601
HphI GGTGA 6 cut(s) 419, 479, 1048, 1507, 1872, 2078
Hpy166II GTNNAC 4 cut(s) 923, 1090, 1707, 2041
Hpy8I GTNNAC 4 cut(s) 923, 1090, 1707, 2041
Hpy99I CGWCG 2 cut(s) 39, 2111
HpyAV CCTTC 8 cut(s) 458, 464, 865, 1033, 1761, 1784, 1841, 2037
HpyCH4III ACNGT 8 cut(s) 178, 220, 334, 512, 769, 2066, 2212, 2297
HpyCH4IV ACGT 4 cut(s) 12, 301, 1416, 2220
HpyCH4V TGCA 8 cut(s) 444, 654, 934, 973, 1055, 1583, 1835, 1997
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 426, 450, 864
HpySE526I ACGT 4 cut(s) 12, 301, 1416, 2220
Hsp92I GRCGYC 1 cut(s) 1357
HspAI GCGC 1 cut(s) 1201
KpnI GGTACC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 1729
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 5 cut(s) 56, 80, 214, 1321, 2334
Lsp1109I GCAGC 7 cut(s) 310, 328, 655, 896, 1105, 1108, 1819
LweI GCATC 8 cut(s) 483, 655, 737, 811, 1042, 1844, 2110, 2277
MaeI CTAG 6 cut(s) 458, 1107, 1293, 1364, 1635, 2255
MaeII ACGT 4 cut(s) 12, 301, 1416, 2220
MaeIII GTNAC 6 cut(s) 328, 1307, 1495, 1816, 1960, 2212
MflI RGATCY 7 cut(s) 70, 139, 631, 1042, 1346, 1758, 2183
MhlI GDGCHC 1 cut(s) 553
MlyI GAGTC 1 cut(s) 2178
MmeI TCCRAC 3 cut(s) 17, 217, 1299
MseI TTAA 7 cut(s) 539, 843, 1112, 1221, 1419, 1623, 1920
MslI CAYNNNNRTG 5 cut(s) 405, 705, 756, 945, 1860
MspA1I CMGCKG 1 cut(s) 756
MspI CCGG 2 cut(s) 426, 601
MspR9I CCNGG 2 cut(s) 602, 774
Mva1269I GAATGC 1 cut(s) 1585
MvaI CCWGG 1 cut(s) 774
MwoI GCNNNNNNNGC 4 cut(s) 281, 426, 450, 864
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 2179
NlaIV GGNNCC 6 cut(s) 82, 141, 175, 192, 1189, 1323
NmuCI GTSAC 4 cut(s) 1307, 1495, 1816, 2212
NspI RCATGY 3 cut(s) 33, 1017, 1292
NspV TTCGAA 1 cut(s) 1661
OliI CACNNNNGTG 1 cut(s) 756
PaeI GCATGC 1 cut(s) 1292
PagI TCATGA 1 cut(s) 1549
PciI ACATGT 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 1 cut(s) 1585
PfeI GAWTC 6 cut(s) 368, 761, 884, 890, 1553, 2153
PkrI GCNGC 7 cut(s) 325, 343, 670, 911, 1120, 1123, 1834
PleI GAGTC 1 cut(s) 2177
PpsI GAGTC 1 cut(s) 2177
Ppu21I YACGTR 1 cut(s) 13
PscI ACATGT 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 1623
Psp6I CCWGG 1 cut(s) 772
PspFI CCCAGC 1 cut(s) 927
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 6 cut(s) 82, 141, 175, 192, 1189, 1323
PspPI GGNCC 3 cut(s) 719, 1187, 2002
PsuI RGATCY 7 cut(s) 70, 139, 631, 1042, 1346, 1758, 2183
PvuII CAGCTG 1 cut(s) 756
RsaI GTAC 2 cut(s) 175, 524
RsaNI GTAC 2 cut(s) 174, 523
RseI CAYNNNNRTG 5 cut(s) 405, 705, 756, 945, 1860
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 7 cut(s) 539, 843, 1112, 1221, 1419, 1623, 1920
SatI GCNGC 7 cut(s) 324, 342, 669, 910, 1119, 1122, 1833
Sau96I GGNCC 3 cut(s) 719, 1187, 2002
SchI GAGTC 1 cut(s) 2178
ScrFI CCNGG 2 cut(s) 602, 774
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 8 cut(s) 483, 655, 737, 811, 1042, 1844, 2110, 2277
SfcI CTRYAG 1 cut(s) 1428
SfuI TTCGAA 1 cut(s) 1661
SinI GGWCC 1 cut(s) 1187
SmiMI CAYNNNNRTG 5 cut(s) 405, 705, 756, 945, 1860
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 1292
SsiI CCGC 3 cut(s) 275, 2302, 2312
SspI AATATT 1 cut(s) 1149
SspMI CTAG 6 cut(s) 458, 1107, 1293, 1364, 1635, 2255
StyD4I CCNGG 2 cut(s) 600, 772
StyI CCWWGG 2 cut(s) 457, 2179
TaaI ACNGT 8 cut(s) 178, 220, 334, 512, 769, 2066, 2212, 2297
TaiI ACGT 4 cut(s) 15, 304, 1419, 2223
TaqI TCGA 8 cut(s) 118, 224, 336, 1154, 1217, 1661, 1688, 2172
TfiI GAWTC 6 cut(s) 368, 761, 884, 890, 1553, 2153
Tru1I TTAA 7 cut(s) 539, 843, 1112, 1221, 1419, 1623, 1920
Tru9I TTAA 7 cut(s) 539, 843, 1112, 1221, 1419, 1623, 1920
TscAI CASTG 4 cut(s) 1212, 1657, 2217, 2302
TseFI GTSAC 4 cut(s) 1307, 1495, 1816, 2212
TseI GCWGC 7 cut(s) 323, 341, 668, 909, 1118, 1121, 1832
Tsp45I GTSAC 4 cut(s) 1307, 1495, 1816, 2212
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 4 cut(s) 1212, 1657, 2217, 2302
VpaK11BI GGWCC 1 cut(s) 1187
VspI ATTAAT 1 cut(s) 1623
XagI CCTNNNNNAGG 1 cut(s) 1938
XapI RAATTY 2 cut(s) 1437, 1916
XbaI TCTAGA 1 cut(s) 2254
XceI RCATGY 3 cut(s) 33, 1017, 1292
XmaJI CCTAGG 1 cut(s) 457
XspI CTAG 6 cut(s) 458, 1107, 1293, 1364, 1635, 2255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.