Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Forward (+)

64643032 .. 64651480

Gene Structure 8449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGCATTTCACGTCGCTTGCCCAATTACATGCCGGCGAATCTGCTTCTGTCCGCTAGGGTTTCCTCGATCCCTCGCCACCGCGAATTCCAAGGCGTGCTTCCTCGACGAGGTCATCAAGGTCCATGACTTTCTCAGCGATCCGTCGGGAATTAGGGCTCGCGGCGACGACGCCAAAACCGTCCAGGTCGCCGTTCCCAAAGTCGCGCCGCCGCCTCCTCCACCGCCGACGGCTCAGCCTGTTCCGCCGTCGGCGGCTGGAGGAGATGCCGCGGTGACGGCGCCGGTCGATGATGAGTCAGCGGCTGCGGCCTCCGCGCAGGCCAAGCGCGCTGCTCTCCAGCGCAAGGCTGCTGCGGATATGGTGGCCGCTGAGGACTTCGCTCGCCGCTTTGAGTCTGGTGATTTGTCGGACACCTCCAGAGGAGTTGTGGGAGAAGAGCAGGGTCAGTCCAATGTTATGTGTCGGATATGCTTTTGTGGTGAAAATGAAGGAAGTCAGAGAGCAAGAAGGATGCTTCCATGTAAAACCTGTGGCAAAAAGTACCATAGGAACTGCTTGAAAACTTGGTCTCAACACAGAGATCTATTTCACTGGAGTTCATGGGCATGCCCCTCGTGCCGAATTTGTGAGGTATGTCGAAGAACAGGAGATCCAAACAAACTTATGTTCTGCAAAAGGTGTGATGGTGCTTACCACTGTTACTGCCAACATCCTTCACATAAGAATGTTTCTGCTGGAGTTTATGTGTGCCCAAAACATACAAAGTGTCACAGCTGTGGATCAAACGTGCCAGGAAATGGTTTGAGTGTAAGGTGGTTTTTGGGATACACCTGCTGTGATGCATGTGGACGATTATTTGTTAAGGGGAATTATTGCCCTGTTTGCTTGAAGGTTTATAGAGATTCAGAATCAACACCTATGGTCTGCTGTGATATTTGCCAGCGTTGGGTACATTGCCATTGTGATGGGATCAGTGATGAAAAATATCAACAATATCAGTTAGATGGAAATCTCCAGTACAAATGTGCCACATGTCGTGGAGAGTGCCACCAGGTCAAGAATCATGAGGATGCTGCGAAAGAGCTTTGGAAGCGAAAAGACGAAGCTGAACGAGATTTAATTACTAGCTTAAGGGCTGCTGCAGGGTTGCCAGCTCATGAAGAAATATTTTCTATTCCTCCCTGTTCTGATGATGAAGAAAATGGCCCTCCAATACAAAAGAGTGAATATGGACGTCCCTTGAAATTGTCTCTCAAAGGATTAGTTGATAAGTCGCCAAAAAAGACCAAGGACAGTGGAAAGAAATCTTTAATCAGAATCCCTGCTAAGAAGAAGGAATACCAGGAAATTTCAATCAGTAATACCGAAGCAAATCAGAGTGTTCGAGGACATGATCACCAATACCTTGGGTCGGACAAGAATGATGAGATGCATTCCTCTAAAAATGCAGAACCAGAAGTATATTCTTCACCTCTTGCTGGAAGTGTGAGCCATACTGAAGAGATTTTCTCTGTTAGTGAGCCAAGCGTATTGAAGCACAAGTTTGTTGATGAAGTGATGTTGAATGGTGGAGAAAGGACCTCCAAAGTTCGTATTAAGGGCAAGTCTCATGGTCTGGATAGTGTAGAGGACACTGGGAAGCATGCTGGCAAGTCTAAGCCTGTGAAAGAGAAGAAGCTAGTGATAAACTTTGGTGCAAAAAAGTTAAATACAACTAAATCTCCAAGTTCTGATGCTTCATCCTATCAAAGAGAACATGCTTCGGTGACCTCCACTGGTGGTGAAGATGCGAGCCAGAGGACAGCAAGTACTATGGTGGGAAATAGACATGATGGTTCTGCTAATTTTGGCGATGCTAAAGGTATAAAAGGTTCAAAGGTTGCTGGAAGAGAAGGAAATATTATAAAGTTGGGAAAGGCTAGGTCAGGAGCTCCAGATCATAACCCCAAACTTGTGAAAGGTGATAGGGTTGAGGAAGTCGAAGGCATTCCTCCGGAGCAGGCGCATGTTTCATCCGGAAAAAGCATTGAAGGAGGCATGGCTGCAAGTGAGCCTGCAGTTGAGATCCCCACTATGAGAAATAACAAGGTGTACTCAAGGAAGCACTCAGAAAGCAGGTCTGCTGTATCTGCTCATAGGAATGATGATTCTGGCCAAACACCAGTTTCACTTTCTTCCTCCAAAGATCATAAGCCTTTGTTGAAGTTTAAGCTTAAGAAACCTAATGTTGAAAGCCAGAGTTCTTCTCAGCATGAAGAAGAAAAAAGCTCTGTTAAGGGCCAACGGTCAAAAAGAAAGAGACCATCACCGTTTATGGAGAAAACATCATTTAGTGAAAATGATGATAGGGGACTGTCGGTTGAAGATAATTTAATGGATGAGATCATGGATGCTAATTGGATATTGAAAAAGTTGGGAAAAGATGCAGTTGGAAAGCGAGTTGAAGTACAGCAGCTATCAGACAATTCATGGCACAAGGGAGTCGTTAGTGATGTTATTGAAGGCACATCACTGTTATCTGTTACTTTAGATGATGGCAAAGTCAAATCTCTGGAACTTGGAAAGCAAGGGGTTCGCTTTGTATCCCAAAAGCAGAAGAGGTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

871

Amino Acids

95.38

Weight (kDa)

8.9

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	210 - 253	1.2e-06	PHD-finger
PHDvar_NSD	PF23004	210 - 255	3.2e-06	Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1907
AarI	CACCTGC	1 cut(s)	842
AatII	GACGTC	1 cut(s)	1240
Acc36I	ACCTGC	2 cut(s)	842, 2109
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccII	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
AccIII	TCCGGA	2 cut(s)	1996, 2018
AclWI	GGATC	6 cut(s)	63, 134, 647, 790, 980, 2062
AcoI	YGGCCR	2 cut(s)	366, 2155
AcsI	RAATTY	3 cut(s)	85, 624, 1350
AcuI	CTGAAG	1 cut(s)	1521
AcyI	GRCGYC	3 cut(s)	171, 281, 1237
AfaI	GTAC	6 cut(s)	545, 954, 1022, 1813, 2096, 2451
AfiI	CCNNNNNNNGG	6 cut(s)	109, 346, 800, 949, 1414, 1481
AflII	CTTAAG	2 cut(s)	1132, 2216
AflIII	ACRYGT	1 cut(s)	1034
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	4 cut(s)	183, 793, 1053, 1344
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	2 cut(s)	637, 669
Alw21I	GWGCWC	1 cut(s)	1936
Alw26I	GTCTC	4 cut(s)	576, 1257, 1614, 2296
AlwI	GGATC	6 cut(s)	63, 134, 647, 790, 980, 2062
AlwNI	CAGNNNCTG	1 cut(s)	305
Aor13HI	TCCGGA	2 cut(s)	1996, 2018
AoxI	GGCC	6 cut(s)	309, 321, 366, 1207, 2155, 2281
ApeKI	GCWGC	9 cut(s)	305, 332, 350, 353, 1076, 1139, 1142, 2045, 2455
ApoI	RAATTY	3 cut(s)	85, 624, 1350
Asp700I	GAANNNNTTC	1 cut(s)	1989
AspLEI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 2008
AspS9I	GGNCC	4 cut(s)	121, 1208, 1581, 2281
AsuHPI	GGTGA	9 cut(s)	286, 413, 494, 1391, 1464, 1780, 1796, 1976, 2301
AvaII	GGWCC	2 cut(s)	121, 1581
BaeGI	GKGCMC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	2157
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	160, 1936
BarI	GAAGNNNNNNTAC	2 cut(s)	1325, 1357
BauI	CACGAG	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	1936
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	9 cut(s)	292, 319, 337, 340, 1063, 1126, 1129, 2032, 2467
BccI	CCATC	6 cut(s)	680, 962, 1001, 1829, 2314, 2531
BceAI	ACGGC	4 cut(s)	176, 232, 246, 294
BcgI	CGANNNNNNTGC	4 cut(s)	597, 631, 2558, 2592
BciT130I	CCWGG	4 cut(s)	185, 795, 1055, 1346
BciVI	GTATCC	2 cut(s)	821, 2596
BclI	TGATCA	1 cut(s)	1396
BcoDI	GTCTC	4 cut(s)	576, 1257, 1614, 2296
BfaI	CTAG	4 cut(s)	56, 1128, 1682, 1923
BfmI	CTRYAG	2 cut(s)	1143, 2058
BfoI	RGCGCY	1 cut(s)	284
BfrI	CTTAAG	2 cut(s)	1132, 2216
BfuAI	ACCTGC	2 cut(s)	842, 2109
BfuI	GTATCC	2 cut(s)	821, 2596
BglII	AGATCT	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	1813
Bme1390I	CCNGG	4 cut(s)	185, 795, 1055, 1346
Bme18I	GGWCC	2 cut(s)	121, 1581
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	4 cut(s)	121, 1208, 1581, 2281
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	4 cut(s)	185, 795, 1055, 1346
BmrI	ACTGGG	1 cut(s)	1647
BmuI	ACTGGG	1 cut(s)	1647
BplI	GAGNNNNNCTC	4 cut(s)	1496, 1528, 2233, 2265
BpmI	CTGGAG	7 cut(s)	279, 323, 403, 616, 759, 1001, 1920
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	2083
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	3 cut(s)	171, 281, 1237
BsaI	GGTCTC	2 cut(s)	576, 2296
BsaJI	CCNNGG	4 cut(s)	90, 270, 1290, 1408
BsaWI	WCCGGW	2 cut(s)	1996, 2018
BsaXI	ACNNNNNCTCC	4 cut(s)	732, 762, 1708, 1738
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 346, 800, 949, 1414, 1481
Bse118I	RCCGGY	2 cut(s)	33, 283
Bse1I	ACTGG	5 cut(s)	599, 1018, 1642, 1783, 2165
Bse3DI	GCAATG	1 cut(s)	955
Bse8I	GATNNNNATC	1 cut(s)	1011
BseAI	TCCGGA	2 cut(s)	1996, 2018
BseBI	CCWGG	4 cut(s)	185, 795, 1055, 1346
BseDI	CCNNGG	4 cut(s)	90, 270, 1290, 1408
BseGI	GGATG	7 cut(s)	519, 712, 1078, 1742, 2015, 2386, 2398
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	6 cut(s)	109, 346, 800, 949, 1414, 1481
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	5 cut(s)	148, 248, 363, 2124, 2264
BseNI	ACTGG	5 cut(s)	599, 1018, 1642, 1783, 2165
BsePI	GCGCGC	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	207, 276, 438
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	9 cut(s)	292, 319, 337, 340, 1063, 1126, 1129, 2032, 2467
Bsh1236I	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	6 cut(s)	311, 323, 368, 1209, 2157, 2283
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	1936
BsiSI	CCGG	4 cut(s)	34, 284, 1997, 2019
BslFI	GGGAC	2 cut(s)	1224, 2367
BslI	CCNNNNNNNGG	6 cut(s)	109, 346, 800, 949, 1414, 1481
BsmAI	GTCTC	4 cut(s)	576, 1257, 1614, 2296
BsmFI	GGGAC	2 cut(s)	1224, 2367
BsmI	GAATGC	2 cut(s)	1435, 1989
BsnI	GGCC	6 cut(s)	311, 323, 368, 1209, 2157, 2283
Bso31I	GGTCTC	2 cut(s)	576, 2296
Bsp1286I	GDGCHC	3 cut(s)	160, 755, 1936
Bsp13I	TCCGGA	2 cut(s)	1996, 2018
Bsp1720I	GCTNAGC	1 cut(s)	234
BspANI	GGCC	6 cut(s)	311, 323, 368, 1209, 2157, 2283
BspCNI	CTCAG	5 cut(s)	147, 247, 364, 2123, 2263
BspEI	TCCGGA	2 cut(s)	1996, 2018
BspFNI	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
BspHI	TCATGA	2 cut(s)	1066, 1159
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	2 cut(s)	1147, 2062
BspMI	ACCTGC	2 cut(s)	842, 2109
BspPI	GGATC	6 cut(s)	63, 134, 647, 790, 980, 2062
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	280
BspTI	CTTAAG	2 cut(s)	1132, 2216
BspTNI	GGTCTC	2 cut(s)	576, 2296
BsrDI	GCAATG	1 cut(s)	955
BsrFI	RCCGGY	2 cut(s)	33, 283
BsrI	ACTGG	5 cut(s)	599, 1018, 1642, 1783, 2165
BssAI	RCCGGY	2 cut(s)	33, 283
BssECI	CCNNGG	4 cut(s)	90, 270, 1290, 1408
BssHII	GCGCGC	1 cut(s)	328
BssNI	GRCGYC	3 cut(s)	171, 281, 1237
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	3 cut(s)	90, 1290, 1408
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	4 cut(s)	185, 795, 1055, 1346
Bst4CI	ACNGT	7 cut(s)	181, 701, 1298, 2289, 2313, 2358, 2517
Bst6I	CTCTTC	4 cut(s)	432, 1497, 1885, 2594
BstACI	GRCGYC	3 cut(s)	171, 281, 1237
BstAFI	CTTAAG	2 cut(s)	1132, 2216
BstDEI	CTNAG	7 cut(s)	134, 234, 372, 1329, 1659, 2110, 2250
BstDSI	CCRYGG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	1768
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	7 cut(s)	519, 712, 1078, 1742, 2015, 2386, 2398
BstFNI	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 2008
BstMAI	GTCTC	4 cut(s)	576, 1257, 1614, 2296
BstMCI	CGRYCG	1 cut(s)	288
BstNI	CCWGG	4 cut(s)	185, 795, 1055, 1346
BstNSI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2012
BstPI	GGTNACC	1 cut(s)	1768
BstSCI	CCNGG	4 cut(s)	183, 793, 1053, 1344
BstSFI	CTRYAG	2 cut(s)	1143, 2058
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
BstV1I	GCAGC	9 cut(s)	292, 319, 337, 340, 1063, 1126, 1129, 2032, 2467
BstX2I	RGATCY	3 cut(s)	583, 652, 2067
BstXI	CCANNNNNNTGG	2 cut(s)	968, 1409
BstYI	RGATCY	3 cut(s)	583, 652, 2067
BsuI	GTATCC	2 cut(s)	821, 2596
BsuRI	GGCC	6 cut(s)	311, 323, 368, 1209, 2157, 2283
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	1869
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	7 cut(s)	519, 712, 1078, 1742, 2015, 2386, 2398
BtsIMutI	CAGTG	7 cut(s)	592, 697, 982, 1303, 1635, 1776, 2513
BveI	ACCTGC	2 cut(s)	842, 2109
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	2 cut(s)	1066, 1159
CfoI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 2008
Cfr10I	RCCGGY	2 cut(s)	33, 283
Cfr13I	GGNCC	4 cut(s)	121, 1208, 1581, 2281
Cfr42I	CCGCGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	1053
Csp6I	GTAC	6 cut(s)	544, 953, 1021, 1812, 2095, 2450
CspCI	CAANNNNNGTGG	2 cut(s)	1279, 1314
CviQI	GTAC	6 cut(s)	544, 953, 1021, 1812, 2095, 2450
DdeI	CTNAG	7 cut(s)	134, 234, 372, 1329, 1659, 2110, 2250
DinI	GGCGCC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	366, 2155
Eam1104I	CTCTTC	4 cut(s)	432, 1497, 1885, 2594
EarI	CTCTTC	4 cut(s)	432, 1497, 1885, 2594
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	1934
Eco130I	CCWWGG	3 cut(s)	90, 1290, 1408
Eco24I	GRGCYC	2 cut(s)	160, 1936
Eco31I	GGTCTC	2 cut(s)	576, 2296
Eco47I	GGWCC	2 cut(s)	121, 1581
Eco53kI	GAGCTC	1 cut(s)	1934
Eco57I	CTGAAG	1 cut(s)	1521
Eco91I	GGTNACC	1 cut(s)	1768
EcoICRI	GAGCTC	1 cut(s)	1934
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	1581
EcoO65I	GGTNACC	1 cut(s)	1768
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	4 cut(s)	183, 793, 1053, 1344
EcoT14I	CCWWGG	3 cut(s)	90, 1290, 1408
EcoT22I	ATGCAT	2 cut(s)	847, 1437
EcoT38I	GRGCYC	2 cut(s)	160, 1936
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	3 cut(s)	90, 1290, 1408
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	2 cut(s)	1224, 2367
FbaI	TGATCA	1 cut(s)	1396
FokI	GGATG	7 cut(s)	526, 699, 1085, 1729, 2002, 2393, 2405
FriOI	GRGCYC	2 cut(s)	160, 1936
FspBI	CTAG	4 cut(s)	56, 1128, 1682, 1923
GlaI	GCGC	7 cut(s)	207, 282, 318, 329, 331, 344, 2007
GsuI	CTGGAG	7 cut(s)	279, 323, 403, 616, 759, 1001, 1920
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	6 cut(s)	311, 323, 368, 1209, 2157, 2283
HapII	CCGG	4 cut(s)	34, 284, 1997, 2019
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 2008
Hin1I	GRCGYC	3 cut(s)	171, 281, 1237
Hin6I	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 2006
HinP1I	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 2006
HindIII	AAGCTT	1 cut(s)	2213
HinfI	GANTC	9 cut(s)	39, 296, 395, 905, 911, 1063, 1320, 2150, 2484
HpaII	CCGG	4 cut(s)	34, 284, 1997, 2019
HphI	GGTGA	9 cut(s)	286, 413, 494, 1391, 1464, 1780, 1796, 1976, 2301
Hpy166II	GTNNAC	2 cut(s)	851, 2095
Hpy8I	GTNNAC	2 cut(s)	851, 2095
Hpy99I	CGWCG	7 cut(s)	17, 110, 148, 170, 173, 232, 253
HpyAV	CCTTC	9 cut(s)	485, 504, 726, 886, 1330, 1889, 1979, 2027, 2498
HpyCH4III	ACNGT	7 cut(s)	181, 701, 1298, 2289, 2313, 2358, 2517
HpyCH4IV	ACGT	3 cut(s)	12, 789, 1237
HpyCH4V	TGCA	9 cut(s)	675, 845, 1145, 1435, 1451, 1700, 2048, 2060, 2429
HpyF3I	CTNAG	7 cut(s)	134, 234, 372, 1329, 1659, 2110, 2250
HpySE526I	ACGT	3 cut(s)	12, 789, 1237
Hsp92I	GRCGYC	3 cut(s)	171, 281, 1237
HspAI	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 2006
KasI	GGCGCC	1 cut(s)	280
Kpn2I	TCCGGA	2 cut(s)	1996, 2018
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	1396
KspI	CCGCGG	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	1931, 1939, 1999
Lsp1109I	GCAGC	9 cut(s)	292, 319, 337, 340, 1063, 1126, 1129, 2032, 2467
MabI	ACCWGGT	1 cut(s)	1053
MaeI	CTAG	4 cut(s)	56, 1128, 1682, 1923
MaeII	ACGT	3 cut(s)	12, 789, 1237
MaeIII	GTNAC	5 cut(s)	274, 701, 770, 1768, 2524
MflI	RGATCY	3 cut(s)	583, 652, 2067
MhlI	GDGCHC	3 cut(s)	160, 755, 1936
MlsI	TGGCCA	1 cut(s)	2157
MluNI	TGGCCA	1 cut(s)	2157
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	305, 404, 2493
MmeI	TCCRAC	4 cut(s)	390, 446, 1395, 2413
Mox20I	TGGCCA	1 cut(s)	2157
Mph1103I	ATGCAT	2 cut(s)	847, 1437
MroI	TCCGGA	2 cut(s)	1996, 2018
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	1989
MscI	TGGCCA	1 cut(s)	2157
MslI	CAYNNNNRTG	6 cut(s)	607, 726, 777, 966, 1071, 2142
Msp20I	TGGCCA	1 cut(s)	2157
MspA1I	CMGCKG	4 cut(s)	272, 302, 371, 777
MspCI	CTTAAG	2 cut(s)	1132, 2216
MspI	CCGG	4 cut(s)	34, 284, 1997, 2019
MspR9I	CCNGG	4 cut(s)	185, 795, 1055, 1346
Mva1269I	GAATGC	2 cut(s)	1435, 1989
MvaI	CCWGG	4 cut(s)	185, 795, 1055, 1346
MvnI	CGCG	6 cut(s)	83, 162, 206, 272, 317, 330
NaeI	GCCGGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	281
NgoMIV	GCCGGC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	3 cut(s)	274, 770, 1768
NsiI	ATGCAT	2 cut(s)	847, 1437
NspI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2012
OliI	CACNNNNGTG	1 cut(s)	777
PaeI	GCATGC	2 cut(s)	612, 1649
PagI	TCATGA	2 cut(s)	1066, 1159
PaqCI	CACCTGC	1 cut(s)	842
PauI	GCGCGC	1 cut(s)	328
PciI	ACATGT	1 cut(s)	1034
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	1435, 1989
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	1989
PfeI	GAWTC	6 cut(s)	39, 905, 911, 1063, 1320, 2150
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	800
PleI	GAGTC	3 cut(s)	304, 403, 2492
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	3 cut(s)	304, 403, 2492
PpuMI	RGGWCCY	1 cut(s)	1581
PscI	ACATGT	1 cut(s)	1034
PsiI	TTATAA	1 cut(s)	1907
Psp124BI	GAGCTC	1 cut(s)	1936
Psp5II	RGGWCCY	1 cut(s)	1581
Psp6I	CCWGG	4 cut(s)	183, 793, 1053, 1344
PspEI	GGTNACC	1 cut(s)	1768
PspGI	CCWGG	4 cut(s)	183, 793, 1053, 1344
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	4 cut(s)	121, 1208, 1581, 2281
PspPPI	RGGWCCY	1 cut(s)	1581
PsrI	GAACNNNNNNTAC	2 cut(s)	1858, 1890
PstI	CTGCAG	2 cut(s)	1147, 2062
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	3 cut(s)	583, 652, 2067
PsyI	GACNNNGTC	1 cut(s)	110
PteI	GCGCGC	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	777
RsaI	GTAC	6 cut(s)	545, 954, 1022, 1813, 2096, 2451
RsaNI	GTAC	6 cut(s)	544, 953, 1021, 1812, 2095, 2450
RseI	CAYNNNNRTG	6 cut(s)	607, 726, 777, 966, 1071, 2142
SacI	GAGCTC	1 cut(s)	1936
SacII	CCGCGG	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	432
Sau96I	GGNCC	4 cut(s)	121, 1208, 1581, 2281
ScaI	AGTACT	1 cut(s)	1813
SchI	GAGTC	3 cut(s)	305, 404, 2493
ScrFI	CCNGG	4 cut(s)	185, 795, 1055, 1346
SduI	GDGCHC	3 cut(s)	160, 755, 1936
SexAI	ACCWGGT	1 cut(s)	1053
SfcI	CTRYAG	2 cut(s)	1143, 2058
SfoI	GGCGCC	1 cut(s)	282
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	121, 1581
SmiMI	CAYNNNNRTG	6 cut(s)	607, 726, 777, 966, 1071, 2142
SmlI	CTYRAG	3 cut(s)	1132, 2098, 2216
SmoI	CTYRAG	3 cut(s)	1132, 2098, 2216
SphI	GCATGC	2 cut(s)	612, 1649
SspDI	GGCGCC	1 cut(s)	280
SspI	AATATT	2 cut(s)	1170, 1903
SspMI	CTAG	4 cut(s)	56, 1128, 1682, 1923
SstI	GAGCTC	1 cut(s)	1936
StyD4I	CCNGG	4 cut(s)	183, 793, 1053, 1344
StyI	CCWWGG	3 cut(s)	90, 1290, 1408
TaaI	ACNGT	7 cut(s)	181, 701, 1298, 2289, 2313, 2358, 2517
TaiI	ACGT	3 cut(s)	15, 792, 1240
TaqI	TCGA	6 cut(s)	67, 105, 288, 640, 1387, 1983
TatI	WGTACW	4 cut(s)	1020, 1811, 2094, 2449
TauI	GCSGC	9 cut(s)	165, 211, 214, 257, 272, 305, 311, 371, 390
TfiI	GAWTC	6 cut(s)	39, 905, 911, 1063, 1320, 2150
TscAI	CASTG	7 cut(s)	599, 704, 982, 1303, 1642, 1783, 2520
TseFI	GTSAC	3 cut(s)	274, 770, 1768
TseI	GCWGC	9 cut(s)	305, 332, 350, 353, 1076, 1139, 1142, 2045, 2455
Tsp45I	GTSAC	3 cut(s)	274, 770, 1768
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	7 cut(s)	599, 704, 982, 1303, 1642, 1783, 2520
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	800
Vha464I	CTTAAG	2 cut(s)	1132, 2216
VpaK11BI	GGWCC	2 cut(s)	121, 1581
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	3 cut(s)	85, 624, 1350
XceI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	1989
XspI	CTAG	4 cut(s)	56, 1128, 1682, 1923
ZraI	GACGTC	1 cut(s)	1238
ZrmI	AGTACT	1 cut(s)	1813
Zsp2I	ATGCAT	2 cut(s)	847, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.