Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Forward (+)

65022034 .. 65023178

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGAAATAACAAGGTATACTCAAGGAAGCACTCAGAAAGCAGGTCTGCTGTATCTGCTCATAGGAATGATGATTCTGGCCAAACACCAGTTTCACTTTCTTCCTCCAAAGATCATAAGCCTTTGTTGAAGTTTAAGCTTAAGAAACCTAATGTTGAAAGCCAGAGTTCTTCTCAGCATGAAGAAGAAAAAAGCTCTGTTAAGGGCCAACGGTCAAAACGAAAGAGACCATCACCGTTTATGGAGAAAACATCATTTAGTGAAAATGATGATAGGGGACTGTCGGTTGAAGATAATTTAATGGATGAGATCATGGATGCTAATTGGATATTGAAAAAGTTGGGAAAAGATGCAGTTGGAAAGCGAGTTGAAGTACAGCAGCTATCGGACAATTCATGGCACAAGGGAGTTGTTAGTGATGTTATTGAAGGCACATCACTGTTATCTGTTACTTTAGATGATGGCAAAGTCAAGTCTCTGGAACTTGGAAAGCAAGGAGTTCGCTTTGTATCCCAAAAGCAGAAGAGGTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

9.77

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	79
AfaI	GTAC	1 cut(s)	375
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	6 cut(s)	130, 158, 290, 334, 371, 428
AluBI	AGCT	3 cut(s)	139, 195, 382
AluI	AGCT	3 cut(s)	139, 195, 382
Alw26I	GTCTC	2 cut(s)	220, 480
AoxI	GGCC	2 cut(s)	79, 205
ApeKI	GCWGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	238, 455
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	220, 480
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	307, 340
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpuEI	CTTGAG	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	310, 322
BseMII	CTCAG	2 cut(s)	48, 188
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	81, 207
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	220, 480
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	81, 207
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	112, 309
BspANI	GGCC	2 cut(s)	81, 207
BspCNI	CTCAG	2 cut(s)	47, 187
BspMI	ACCTGC	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	112, 309
BssNAI	GTATAC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	19
Bst4CI	ACNGT	4 cut(s)	213, 237, 282, 441
Bst6I	CTCTTC	1 cut(s)	518
BstAFI	CTTAAG	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	34, 174
BstF5I	GGATG	2 cut(s)	310, 322
BstKTI	GATC	2 cut(s)	115, 312
BstMAI	GTCTC	2 cut(s)	220, 480
BstMBI	GATC	2 cut(s)	112, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	81, 207
BtsCI	GGATG	2 cut(s)	310, 322
BtsIMutI	CAGTG	1 cut(s)	437
BveI	ACCTGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	179, 313, 396, 537
CviJI	RGCY	7 cut(s)	81, 121, 139, 162, 195, 207, 382
CviKI_1	RGCY	7 cut(s)	81, 121, 139, 162, 195, 207, 382
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	34, 174
DpnI	GATC	2 cut(s)	114, 311
DpnII	GATC	2 cut(s)	112, 309
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco31I	GGTCTC	1 cut(s)	220
FaeI	CATG	4 cut(s)	182, 316, 399, 540
FaiI	YATR	8 cut(s)	19, 63, 117, 180, 242, 314, 397, 538
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	4 cut(s)	178, 312, 395, 536
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	2 cut(s)	317, 329
Fsp4HI	GCNGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	81, 207
Hin1II	CATG	4 cut(s)	182, 316, 399, 540
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	37, 388
Hpy188III	TCNNGA	2 cut(s)	479, 531
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	4 cut(s)	213, 237, 282, 441
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	34, 174
Hsp92II	CATG	4 cut(s)	182, 316, 399, 540
Kzo9I	GATC	2 cut(s)	112, 309
LpnPI	CCDG	5 cut(s)	28, 63, 102, 176, 464
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	307, 340
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	114, 311
MboI	GATC	2 cut(s)	112, 309
MboII	GAAGA	6 cut(s)	93, 162, 194, 197, 302, 535
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	3 cut(s)	295, 322, 391
MluNI	TGGCCA	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	2 cut(s)	115, 519
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	4 cut(s)	135, 141, 201, 299
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	2 cut(s)	112, 309
NlaIII	CATG	4 cut(s)	182, 316, 399, 540
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	135, 141, 201, 299
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	2 cut(s)	112, 309
Sau96I	GGNCC	1 cut(s)	205
SetI	ASST	7 cut(s)	18, 47, 141, 151, 197, 384, 530
SfaNI	GCATC	2 cut(s)	307, 340
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	22, 140
SmoI	CTYRAG	2 cut(s)	22, 140
Sse9I	AATT	3 cut(s)	295, 322, 391
TaaI	ACNGT	4 cut(s)	213, 237, 282, 441
TasI	AATT	3 cut(s)	295, 322, 391
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	4 cut(s)	135, 141, 201, 299
Tru9I	TTAA	4 cut(s)	135, 141, 201, 299
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	195, 384
TspRI	CASTG	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.