Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2818666 .. 2826092

Gene Structure 7427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG017100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGTGTCGGATATGCTTTTGTGGTGAAAATGAAGGAAGTCAGAGAGCAAGAAGGATGCTTCCATGTAAAACCTGTGGCAAAAAGTACCATAGGAACTGCTTGAAAACTTGGTCTCAACACAGAGATCTATTTCACTGGAGTTCATGGGCATGCCCCTCGTGCCGAATTTGTGAGGTATGTCGAAGAACAGGAGATCCAAACAAACTTATGTTCTGCAAAAGGTGTGATGGTGCTTACCACTGTTACTGCCAACATCCTTCACATAAGAATGTTTCTGCTGGAGTTTATGTGTGCCCAAAACATACAAAGTGTCACAGCTGTGGGTCAAACGTGCCAGGAAATGGTTTGAGTGTAAGGTGGTTTTTGGGATACACCTGCTGTGATGCATGTGGACGATTATTTGTTAAGGGGAATTATTGCCCTGTTTGCTTGAAGGTTTATAGAGATTCAGAATCAACACCTATGGTCTGCTGTGATATTTGCCAGCGTTGGGTACATTGCCATTGTGATGGGATCAGTGATGAAAAATATCAACAATATCAGTTAGATGGAAATCTCCAGTACAAATGTGCCACATGTCGTGGAGAGTGCCACCAGGTCAAGAATCATGAGGATGCTGCGAAAGAGCTTTGGAAGCGAAAAGACGAAGCTGAACGAGATTTAATTACTAGCTTAAGGGCTGCTGCAGGGTTGCCAGCTCATGAAGAAATATTTTCTATTCCTCCCTATTCTGATGATGAAGAAAATGGCCCTCCAATACCAAAGAGTGAATATGGACGTCCCTTGAAATTGTCTCTCAAAGGATTAGTTGATAAGTCGCCAAAAAAGACCAAGGACAGTGGAAAGAAATCTTTAATCAGAATCCCTGCTAAGAAGAAGGAATACCAGGAAATCTCAATCAGTAATACCGAAGCAAATCAGAGTGTTCGAGGACATGATCACCAATACCTTGGGTCGGACAAGAATGATGAGATGCATTCCTCTAAAAATGCAGAACCAGAAGTATATTCTTCACCTCTTGCTGGAAGTGTGAGCCATCCTGAAGAGATTTTCTCTGTCAGTGAGCCAAGCGTATTGAAGCACAAGTTTGTTGATGAAGTGATGTTGAATGGTGGAGATAGGACCTCCAAAGTTCGTATTAAGGGCAAGTCTCATGGTCTGGATAGCGTAGAGGACACTGGGAAGCATGCTGGCAAGTCTAAGCCTGTGAAAGAGAAGAAGCTAGTGATAAACTTTGGTGCAAAAAAGTTAAATATAACTAAATCTCCAAGTTCTGATGCTTCAACCTATCAAAGAGAACATGCTTCGGTGACCTCCAATGGTGGTGAAGATGCGAACCAGAGGACAACAAATACTATGGTGGGAAATAGACATGATGGTTCTGCTAATTTTGGCGATGCTAAAGGTATCAAAGGTTCAAAGGTTGCTGGAAGAGAAGGAAATATTATAAAGTTGGGAAAGGCTAGGTCAGGAGCTCCAGATCATAACCCCAAATTTGTGAAAGGTGATAGGGTTGAGGAAGACGAAGGCATTCCTCCGGAGCAGGCGCATGTTTCATCCGGAAAAAGCATTGAAGGAGGCATTACGGCAAGTGAGCCTGCAGTTGAGATCCCCACTATGAGAAATAACAAGGTATACTCAAGGAAGCACTCAGAAAGCAGGTCTGCTGTGTCTGCTCATAGGAATGATGATTCTGGCCAAACACCAGTTTCAGTTTCTTCCTCCAAAGATCATAAGCCTTTGTTGAAGTTTAAGCTTAAGAAACCCAATGTTGAAAGCCAGAGTTCTTCTCAGCATGAAGAAGAAAAAAGCTCTGTTAAGGGCCAACGGTCAAAAAGAAAGAGACCATCACCGTTTATGGAGAAAACATCATTTAGTGAAAATGATGATAGGGGACCGTCGGTTGAAGATAATTTAATGGATGAGATCATGGATGCTAATTGGATATTGAAAAAGTTGGGAAAAGATGCAGTTGGAAAACGAGTTGAAGTACAGCAGCTATCGGACAATTCATGGCACAAGGGGGTCGTTAGTGATGTTGTTGAAGGCACCTCACTGTTATCTGTTACTTTAGATGATGGCAAAGTCAAATCTCTGGAACTTGGAAAGCAAGGGGTTCGCTTTGTATCCCAAAAGCAGAAGAGGTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

718

Amino Acids

79.75

Weight (kDa)

9.02

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	57 - 100	9.8e-07	PHD-finger
PHDvar_NSD	PF23004	57 - 102	2.5e-06	Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1448
AarI	CACCTGC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	781
Acc36I	ACCTGC	2 cut(s)	383, 1650
AccB1I	GGYRCC	1 cut(s)	2048
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	1635
AccIII	TCCGGA	2 cut(s)	1537, 1559
AclWI	GGATC	3 cut(s)	188, 521, 1603
AcoI	YGGCCR	1 cut(s)	1696
AcsI	RAATTY	2 cut(s)	165, 1493
AcuI	CTGAAG	1 cut(s)	1062
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	4 cut(s)	86, 495, 563, 1992
AfiI	CCNNNNNNNGG	4 cut(s)	341, 490, 955, 1022
AflII	CTTAAG	2 cut(s)	673, 1757
AflIII	ACRYGT	1 cut(s)	575
AjnI	CCWGG	3 cut(s)	334, 594, 885
AleI	CACNNNNGTG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
Alw21I	GWGCWC	1 cut(s)	1477
Alw26I	GTCTC	4 cut(s)	117, 798, 1155, 1837
AlwI	GGATC	3 cut(s)	188, 521, 1603
Aor13HI	TCCGGA	2 cut(s)	1537, 1559
AoxI	GGCC	3 cut(s)	748, 1696, 1822
ApeKI	GCWGC	4 cut(s)	617, 680, 683, 1996
ApoI	RAATTY	2 cut(s)	165, 1493
Asp700I	GAANNNNTTC	1 cut(s)	1530
AspLEI	GCGC	1 cut(s)	1549
AspS9I	GGNCC	4 cut(s)	749, 1122, 1822, 1895
AsuHPI	GGTGA	7 cut(s)	35, 932, 1005, 1321, 1337, 1517, 1842
AvaII	GGWCC	2 cut(s)	1122, 1895
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	1698
BanI	GGYRCC	1 cut(s)	2048
BanII	GRGCYC	1 cut(s)	1477
BarI	GAAGNNNNNNTAC	2 cut(s)	866, 898
BauI	CACGAG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	1527
Bbv12I	GWGCWC	1 cut(s)	1477
BbvI	GCAGC	4 cut(s)	604, 667, 670, 2008
BccI	CCATC	7 cut(s)	221, 503, 542, 1044, 1370, 1855, 2072
BceAI	ACGGC	1 cut(s)	1602
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 2099, 2133
BciT130I	CCWGG	3 cut(s)	336, 596, 887
BciVI	GTATCC	2 cut(s)	362, 2137
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	4 cut(s)	117, 798, 1155, 1837
BfaI	CTAG	3 cut(s)	669, 1223, 1464
BfmI	CTRYAG	2 cut(s)	684, 1599
BfrI	CTTAAG	2 cut(s)	673, 1757
BfuAI	ACCTGC	2 cut(s)	383, 1650
BfuI	GTATCC	2 cut(s)	362, 2137
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	4 cut(s)	618, 681, 684, 1997
BlsI	GCNGC	4 cut(s)	619, 682, 685, 1998
Bme1390I	CCNGG	3 cut(s)	336, 596, 887
Bme18I	GGWCC	2 cut(s)	1122, 1895
BmgT120I	GGNCC	4 cut(s)	749, 1122, 1822, 1895
BmiI	GGNNCC	2 cut(s)	1896, 2050
BmrFI	CCNGG	3 cut(s)	336, 596, 887
BmrI	ACTGGG	1 cut(s)	1188
BmsI	GCATC	9 cut(s)	45, 373, 604, 963, 1267, 1321, 1387, 1924, 1957
BmuI	ACTGGG	1 cut(s)	1188
BpiI	GAAGAC	1 cut(s)	1527
BplI	GAGNNNNNCTC	4 cut(s)	1037, 1069, 1774, 1806
BpmI	CTGGAG	4 cut(s)	157, 300, 542, 1461
BpuEI	CTTGAG	1 cut(s)	1624
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	778
BsaI	GGTCTC	2 cut(s)	117, 1837
BsaJI	CCNNGG	2 cut(s)	831, 949
BsaWI	WCCGGW	2 cut(s)	1537, 1559
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 1249, 1279
Bsc4I	CCNNNNNNNGG	4 cut(s)	341, 490, 955, 1022
Bse1I	ACTGG	4 cut(s)	140, 559, 1183, 1706
Bse3DI	GCAATG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	552
BseAI	TCCGGA	2 cut(s)	1537, 1559
BseBI	CCWGG	3 cut(s)	336, 596, 887
BseDI	CCNNGG	2 cut(s)	831, 949
BseGI	GGATG	7 cut(s)	60, 253, 619, 1036, 1556, 1927, 1939
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	4 cut(s)	341, 490, 955, 1022
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	1665, 1805
BseNI	ACTGG	4 cut(s)	140, 559, 1183, 1706
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	604, 667, 670, 2008
BshFI	GGCC	3 cut(s)	750, 1698, 1824
BshNI	GGYRCC	1 cut(s)	2048
BsiHKAI	GWGCWC	1 cut(s)	1477
BsiSI	CCGG	2 cut(s)	1538, 1560
BslFI	GGGAC	2 cut(s)	765, 1908
BslI	CCNNNNNNNGG	4 cut(s)	341, 490, 955, 1022
BsmAI	GTCTC	4 cut(s)	117, 798, 1155, 1837
BsmFI	GGGAC	2 cut(s)	765, 1908
BsmI	GAATGC	2 cut(s)	976, 1530
BsnI	GGCC	3 cut(s)	750, 1698, 1824
Bso31I	GGTCTC	2 cut(s)	117, 1837
Bsp1286I	GDGCHC	2 cut(s)	296, 1477
Bsp13I	TCCGGA	2 cut(s)	1537, 1559
Bsp143I	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
BspANI	GGCC	3 cut(s)	750, 1698, 1824
BspCNI	CTCAG	2 cut(s)	1664, 1804
BspEI	TCCGGA	2 cut(s)	1537, 1559
BspHI	TCATGA	2 cut(s)	607, 700
BspLI	GGNNCC	2 cut(s)	1896, 2050
BspMAI	CTGCAG	2 cut(s)	688, 1603
BspMI	ACCTGC	2 cut(s)	383, 1650
BspPI	GGATC	3 cut(s)	188, 521, 1603
BspT107I	GGYRCC	1 cut(s)	2048
BspTI	CTTAAG	2 cut(s)	673, 1757
BspTNI	GGTCTC	2 cut(s)	117, 1837
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	4 cut(s)	140, 559, 1183, 1706
BssECI	CCNNGG	2 cut(s)	831, 949
BssMI	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
BssNAI	GTATAC	1 cut(s)	1636
BssNI	GRCGYC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	831, 949
Bst1107I	GTATAC	1 cut(s)	1636
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	336, 596, 887
Bst4CI	ACNGT	6 cut(s)	242, 839, 1830, 1854, 1899, 2058
Bst6I	CTCTTC	3 cut(s)	1038, 1426, 2135
BstACI	GRCGYC	1 cut(s)	778
BstAFI	CTTAAG	2 cut(s)	673, 1757
BstC8I	GCNNGC	7 cut(s)	151, 485, 696, 1188, 1192, 1545, 1599
BstDEI	CTNAG	4 cut(s)	870, 1200, 1651, 1791
BstEII	GGTNACC	1 cut(s)	1309
BstF5I	GGATG	7 cut(s)	60, 253, 619, 1036, 1556, 1927, 1939
BstHHI	GCGC	1 cut(s)	1549
BstKTI	GATC	8 cut(s)	127, 196, 516, 940, 1483, 1611, 1732, 1929
BstMAI	GTCTC	4 cut(s)	117, 798, 1155, 1837
BstMBI	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 426, 634, 1673
BstNI	CCWGG	3 cut(s)	336, 596, 887
BstNSI	RCATGY	6 cut(s)	153, 390, 579, 1190, 1304, 1553
BstPI	GGTNACC	1 cut(s)	1309
BstSCI	CCNGG	3 cut(s)	334, 594, 885
BstSFI	CTRYAG	2 cut(s)	684, 1599
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	604, 667, 670, 2008
BstV2I	GAAGAC	1 cut(s)	1527
BstX2I	RGATCY	3 cut(s)	124, 193, 1608
BstXI	CCANNNNNNTGG	2 cut(s)	509, 950
BstYI	RGATCY	3 cut(s)	124, 193, 1608
BstZ17I	GTATAC	1 cut(s)	1636
BsuI	GTATCC	2 cut(s)	362, 2137
BsuRI	GGCC	3 cut(s)	750, 1698, 1824
BtgZI	GCGATG	1 cut(s)	1410
BtsCI	GGATG	7 cut(s)	60, 253, 619, 1036, 1556, 1927, 1939
BtsIMutI	CAGTG	7 cut(s)	133, 238, 523, 844, 1066, 1176, 2054
BveI	ACCTGC	2 cut(s)	383, 1650
Cac8I	GCNNGC	7 cut(s)	151, 485, 696, 1188, 1192, 1545, 1599
CciI	TCATGA	2 cut(s)	607, 700
CfoI	GCGC	1 cut(s)	1549
Cfr13I	GGNCC	4 cut(s)	749, 1122, 1822, 1895
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	4 cut(s)	85, 494, 562, 1991
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviQI	GTAC	4 cut(s)	85, 494, 562, 1991
DdeI	CTNAG	4 cut(s)	870, 1200, 1651, 1791
DpnI	GATC	8 cut(s)	126, 195, 515, 939, 1482, 1610, 1731, 1928
DpnII	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
EaeI	YGGCCR	1 cut(s)	1696
Eam1104I	CTCTTC	3 cut(s)	1038, 1426, 2135
EarI	CTCTTC	3 cut(s)	1038, 1426, 2135
Ecl136II	GAGCTC	1 cut(s)	1475
Eco130I	CCWWGG	2 cut(s)	831, 949
Eco24I	GRGCYC	1 cut(s)	1477
Eco31I	GGTCTC	2 cut(s)	117, 1837
Eco47I	GGWCC	2 cut(s)	1122, 1895
Eco53kI	GAGCTC	1 cut(s)	1475
Eco57I	CTGAAG	1 cut(s)	1062
Eco91I	GGTNACC	1 cut(s)	1309
EcoICRI	GAGCTC	1 cut(s)	1475
EcoO109I	RGGNCCY	1 cut(s)	1122
EcoO65I	GGTNACC	1 cut(s)	1309
EcoRII	CCWGG	3 cut(s)	334, 594, 885
EcoT14I	CCWWGG	2 cut(s)	831, 949
EcoT22I	ATGCAT	2 cut(s)	388, 978
EcoT38I	GRGCYC	1 cut(s)	1477
ErhI	CCWWGG	2 cut(s)	831, 949
FaqI	GGGAC	2 cut(s)	765, 1908
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	1635
Fnu4HI	GCNGC	4 cut(s)	618, 681, 684, 1997
FokI	GGATG	7 cut(s)	67, 240, 626, 1023, 1543, 1934, 1946
FriOI	GRGCYC	1 cut(s)	1477
Fsp4HI	GCNGC	4 cut(s)	618, 681, 684, 1997
FspBI	CTAG	3 cut(s)	669, 1223, 1464
GlaI	GCGC	1 cut(s)	1548
GluI	GCNGC	4 cut(s)	618, 681, 684, 1997
GsuI	CTGGAG	4 cut(s)	157, 300, 542, 1461
HaeIII	GGCC	3 cut(s)	750, 1698, 1824
HapII	CCGG	2 cut(s)	1538, 1560
HhaI	GCGC	1 cut(s)	1549
Hin1I	GRCGYC	1 cut(s)	778
Hin6I	GCGC	1 cut(s)	1547
HinP1I	GCGC	1 cut(s)	1547
HindIII	AAGCTT	1 cut(s)	1754
HinfI	GANTC	5 cut(s)	446, 452, 604, 861, 1691
HpaII	CCGG	2 cut(s)	1538, 1560
HphI	GGTGA	7 cut(s)	35, 932, 1005, 1321, 1337, 1517, 1842
Hpy166II	GTNNAC	2 cut(s)	392, 1636
Hpy8I	GTNNAC	2 cut(s)	392, 1636
Hpy99I	CGWCG	1 cut(s)	1903
HpyAV	CCTTC	9 cut(s)	26, 45, 267, 427, 871, 1430, 1520, 1568, 2039
HpyCH4III	ACNGT	6 cut(s)	242, 839, 1830, 1854, 1899, 2058
HpyCH4IV	ACGT	2 cut(s)	330, 778
HpyCH4V	TGCA	8 cut(s)	216, 386, 686, 976, 992, 1241, 1601, 1970
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 426, 634, 1673
HpyF3I	CTNAG	4 cut(s)	870, 1200, 1651, 1791
HpySE526I	ACGT	2 cut(s)	330, 778
Hsp92I	GRCGYC	1 cut(s)	778
HspAI	GCGC	1 cut(s)	1547
Kpn2I	TCCGGA	2 cut(s)	1537, 1559
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
LmnI	GCTCC	3 cut(s)	1472, 1480, 1540
Lsp1109I	GCAGC	4 cut(s)	604, 667, 670, 2008
LweI	GCATC	9 cut(s)	45, 373, 604, 963, 1267, 1321, 1387, 1924, 1957
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	3 cut(s)	669, 1223, 1464
MaeII	ACGT	2 cut(s)	330, 778
MaeIII	GTNAC	4 cut(s)	242, 311, 1309, 2065
MalI	GATC	8 cut(s)	126, 195, 515, 939, 1482, 1610, 1731, 1928
MboI	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
MflI	RGATCY	3 cut(s)	124, 193, 1608
MhlI	GDGCHC	2 cut(s)	296, 1477
MlsI	TGGCCA	1 cut(s)	1698
MluCI	AATT	9 cut(s)	165, 412, 663, 788, 1387, 1493, 1912, 1939, 2008
MluNI	TGGCCA	1 cut(s)	1698
MmeI	TCCRAC	2 cut(s)	936, 1954
Mox20I	TGGCCA	1 cut(s)	1698
Mph1103I	ATGCAT	2 cut(s)	388, 978
MroI	TCCGGA	2 cut(s)	1537, 1559
MroXI	GAANNNNTTC	1 cut(s)	1530
MscI	TGGCCA	1 cut(s)	1698
MslI	CAYNNNNRTG	6 cut(s)	148, 267, 318, 507, 612, 1683
Msp20I	TGGCCA	1 cut(s)	1698
MspA1I	CMGCKG	1 cut(s)	318
MspCI	CTTAAG	2 cut(s)	673, 1757
MspI	CCGG	2 cut(s)	1538, 1560
MspR9I	CCNGG	3 cut(s)	336, 596, 887
Mva1269I	GAATGC	2 cut(s)	976, 1530
MvaI	CCWGG	3 cut(s)	336, 596, 887
MwoI	GCNNNNNNNGC	4 cut(s)	159, 426, 634, 1673
NdeII	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
NlaIV	GGNNCC	2 cut(s)	1896, 2050
NmuCI	GTSAC	2 cut(s)	311, 1309
NsiI	ATGCAT	2 cut(s)	388, 978
NspI	RCATGY	6 cut(s)	153, 390, 579, 1190, 1304, 1553
OliI	CACNNNNGTG	1 cut(s)	318
PaeI	GCATGC	2 cut(s)	153, 1190
PagI	TCATGA	2 cut(s)	607, 700
PaqCI	CACCTGC	1 cut(s)	383
PciI	ACATGT	1 cut(s)	575
PctI	GAATGC	2 cut(s)	976, 1530
PdmI	GAANNNNTTC	1 cut(s)	1530
PfeI	GAWTC	5 cut(s)	446, 452, 604, 861, 1691
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	619, 682, 685, 1998
PpuMI	RGGWCCY	1 cut(s)	1122
PscI	ACATGT	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	1448
Psp124BI	GAGCTC	1 cut(s)	1477
Psp5II	RGGWCCY	1 cut(s)	1122
Psp6I	CCWGG	3 cut(s)	334, 594, 885
PspEI	GGTNACC	1 cut(s)	1309
PspGI	CCWGG	3 cut(s)	334, 594, 885
PspN4I	GGNNCC	2 cut(s)	1896, 2050
PspPI	GGNCC	4 cut(s)	749, 1122, 1822, 1895
PspPPI	RGGWCCY	1 cut(s)	1122
PsrI	GAACNNNNNNTAC	2 cut(s)	1399, 1431
PstI	CTGCAG	2 cut(s)	688, 1603
PsuI	RGATCY	3 cut(s)	124, 193, 1608
PvuII	CAGCTG	1 cut(s)	318
RsaI	GTAC	4 cut(s)	86, 495, 563, 1992
RsaNI	GTAC	4 cut(s)	85, 494, 562, 1991
RseI	CAYNNNNRTG	6 cut(s)	148, 267, 318, 507, 612, 1683
SacI	GAGCTC	1 cut(s)	1477
SatI	GCNGC	4 cut(s)	618, 681, 684, 1997
Sau3AI	GATC	8 cut(s)	124, 193, 513, 937, 1480, 1608, 1729, 1926
Sau96I	GGNCC	4 cut(s)	749, 1122, 1822, 1895
ScrFI	CCNGG	3 cut(s)	336, 596, 887
SduI	GDGCHC	2 cut(s)	296, 1477
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	9 cut(s)	45, 373, 604, 963, 1267, 1321, 1387, 1924, 1957
SfcI	CTRYAG	2 cut(s)	684, 1599
SinI	GGWCC	2 cut(s)	1122, 1895
SmiMI	CAYNNNNRTG	6 cut(s)	148, 267, 318, 507, 612, 1683
SmlI	CTYRAG	3 cut(s)	673, 1639, 1757
SmoI	CTYRAG	3 cut(s)	673, 1639, 1757
SphI	GCATGC	2 cut(s)	153, 1190
Sse9I	AATT	9 cut(s)	165, 412, 663, 788, 1387, 1493, 1912, 1939, 2008
SspI	AATATT	2 cut(s)	711, 1444
SspMI	CTAG	3 cut(s)	669, 1223, 1464
SstI	GAGCTC	1 cut(s)	1477
StyD4I	CCNGG	3 cut(s)	334, 594, 885
StyI	CCWWGG	2 cut(s)	831, 949
TaaI	ACNGT	6 cut(s)	242, 839, 1830, 1854, 1899, 2058
TaiI	ACGT	2 cut(s)	333, 781
TaqI	TCGA	2 cut(s)	181, 928
TasI	AATT	9 cut(s)	165, 412, 663, 788, 1387, 1493, 1912, 1939, 2008
TatI	WGTACW	2 cut(s)	561, 1990
TfiI	GAWTC	5 cut(s)	446, 452, 604, 861, 1691
TscAI	CASTG	7 cut(s)	140, 245, 523, 844, 1066, 1183, 2061
TseFI	GTSAC	2 cut(s)	311, 1309
TseI	GCWGC	4 cut(s)	617, 680, 683, 1996
Tsp45I	GTSAC	2 cut(s)	311, 1309
TspDTI	ATGAA	9 cut(s)	45, 132, 537, 717, 753, 1110, 1545, 1812, 2001
TspRI	CASTG	7 cut(s)	140, 245, 523, 844, 1066, 1183, 2061
Van91I	CCANNNNNTGG	1 cut(s)	341
Vha464I	CTTAAG	2 cut(s)	673, 1757
VpaK11BI	GGWCC	2 cut(s)	1122, 1895
XapI	RAATTY	2 cut(s)	165, 1493
XceI	RCATGY	6 cut(s)	153, 390, 579, 1190, 1304, 1553
XmiI	GTMKAC	1 cut(s)	1635
XmnI	GAANNNNTTC	1 cut(s)	1530
XspI	CTAG	3 cut(s)	669, 1223, 1464
ZraI	GACGTC	1 cut(s)	779
Zsp2I	ATGCAT	2 cut(s)	388, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.