Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005539.1

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Forward (+)

28705 .. 35505

Gene Structure 6801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005539.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

atggcatttcacgtcgcttgcccaattacatgccggcgaatctgcttctgcccgctagggtttcctcgatccctcgccaccgcgaattccaaggcgtgcttcctcgacgaggtcatcaaggtccatgactttctcagcgatccgttgggaattagggctcgcggtgacgacgccaaaaccgtccaggtcgctgttcccaaagtcgcgccgccgcctcctccgccgccgacggctcagcctgttccgccgtcggtggccggaggagatgccgcggtgacggcgccggtcgatgatgagtcggcggccgcggcctccgcgcaggccaagcgcgctgctctacagcgcaaggctgctgcggatatggttgccgctgaggacttcgctcgccgctttgagtctggtgatttgtcggacacctccagaggagttgtgggagaagagcagggtcagtccaatgttatgtgtcggatatgcttttgtggtgaaaatgaaggaagtcagagagcaagaaggatgcttccatgtaaaacctgtggcaaaaagtaccataggaactgcttgaaaacttggtctcaacacagagatctatttcactggagttcatgggcatgcccctcgtgccgaatttgtgaggtatgtcgaagaacaggagatccaaacaaacttatgttctgcaaaaggtgtgatggtgcttaccactgttactgccaacatccttcacataagaatgtttctgctggagtttatgtgtgcccaaaacatacaaagtgtcacagctgtgggtcaaacgtgccaggaaatggtttgagtgtacggtggtttttgggatacacctgctgtgatgcatgtggacgattatttgttaaggggaattattgccctgtttgcttgaaggtttatagagattcagaatcaacacctatggtctgctgtgatatttgccagcgttgggtacattgccattgtgatgggatcagtgatgaaaaatatcaacaatatcagttagatggaaatctccagtacaaatgtgccacatgtcgtggagagtgccaccaggtcaagaatcatgaggatgctgcgaaagagctttggaagcgaaaagacgaaactgaacgagatttaattactagcttaagggctgctgcagggttgccagctcctgaagaaatattttctattcctccctattctgatgatgaagaaaatggccctccaatacaaaagagtgaatatggacgtcccttgaaattgtctctcaaaggattagttgataagtcgccaaaaaagaccaaggacagtggaaagaaatctttaatcagaatccctgctaagaagaaggaataccaggaaatttcaatcagtaataccgaagcaaatcagagtgttcgaggacatgatcaccaataccttgggtcggacaagaatgatgagatgcattcctctaaaaatgcagaaccagaagtatattcttcacctcttgctggaagtgtgagccatactgaagagattttctctgtcagtgagccaagcgtattgaagcacaagtttgttgatgaagtgatgttaaatggtggagataggacctccaaagttcgtattaagggcaagtctcatggtctggatagtgtagaggacactgggaagcatgctggcaagtctaagcctgtgaaagagaagaagctagtgataaactttggtgcaaaaaagttaaatataactaaatctccaagttctgatgcttcaacctatcaaagagaacatgcttcggtgacctccaatggtggtgaagatgcgagccagaggataacaagtactatggtgggaaatagacatgatggttctgctaattttggcgatgctaaaggttcaaaggttgctggaagagaaggaaatattataaagttgggaaaggctaggtcaggagctccagatcataaccccaaacttgtgaaaggtgataggtttgagggagtagaaggcattcctccagagcaggcgcatgttctgtccggaaaaagcattgaaggaggcacgactgcaaatgagcctgcagtttcactttcttcctccaaagatcataagcctttgttgaagtttaagcttaagaaacctaatgttgaaagccagagttctcagcatgaagaagaaaaaagctctgttaagggccaacggtcaaaaagaaagagaccatcaccgtttatggagaaaacatcatttagtgaaaatgatgataggggaccgtctgttgaagataatttaatggatgagatcatggatgctaattggattttgaaaaagttgggaaaagatgcagttggaaagcgagttgaagtacagcagctatcggacaattcatggcacaagggagtcgttagtgatgttattggaggcacatcactgttatctgttactttagatgatggcaaagtcaaatctctggaacttggaaagcaaggggttcgctttgtatcccaaaagcagaagaggtcaagaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

832

Amino Acids

91.17

Weight (kDa)

8.89

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1898
AarI	CACCTGC	1 cut(s)	842
AatII	GACGTC	1 cut(s)	1240
Acc36I	ACCTGC	1 cut(s)	842
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccII	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
AccIII	TCCGGA	1 cut(s)	2009
AclWI	GGATC	4 cut(s)	63, 134, 647, 980
AcoI	YGGCCR	2 cut(s)	255, 303
AcsI	RAATTY	3 cut(s)	85, 624, 1350
AcuI	CTGAAG	2 cut(s)	1182, 1521
AcyI	GRCGYC	3 cut(s)	171, 281, 1237
AfaI	GTAC	6 cut(s)	545, 813, 954, 1022, 1813, 2334
AfiI	CCNNNNNNNGG	5 cut(s)	109, 800, 949, 1414, 1481
AflII	CTTAAG	2 cut(s)	1132, 2102
AflIII	ACRYGT	1 cut(s)	1034
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	4 cut(s)	183, 793, 1053, 1344
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	2 cut(s)	637, 669
AluBI	AGCT	9 cut(s)	777, 1087, 1131, 1157, 1681, 1925, 2101, 2154, 2341
AluI	AGCT	9 cut(s)	777, 1087, 1131, 1157, 1681, 1925, 2101, 2154, 2341
Alw21I	GWGCWC	1 cut(s)	1927
Alw26I	GTCTC	4 cut(s)	576, 1257, 1614, 2179
AlwI	GGATC	4 cut(s)	63, 134, 647, 980
AlwNI	CAGNNNCTG	1 cut(s)	1160
Aor13HI	TCCGGA	1 cut(s)	2009
AoxI	GGCC	6 cut(s)	255, 303, 309, 321, 1207, 2164
ApeKI	GCWGC	7 cut(s)	332, 350, 353, 1076, 1139, 1142, 2338
ApoI	RAATTY	3 cut(s)	85, 624, 1350
Asp700I	GAANNNNTTC	1 cut(s)	1980
AspLEI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 1999
AspS9I	GGNCC	5 cut(s)	121, 1208, 1581, 2164, 2237
AvaII	GGWCC	3 cut(s)	121, 1581, 2237
BaeGI	GKGCMC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	160, 1927
BarI	GAAGNNNNNNTAC	2 cut(s)	1325, 1357
BauI	CACGAG	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	1927
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	7 cut(s)	319, 337, 340, 1063, 1126, 1129, 2350
BccI	CCATC	6 cut(s)	680, 962, 1001, 1829, 2197, 2414
BceAI	ACGGC	3 cut(s)	232, 246, 294
BcgI	CGANNNNNNTGC	4 cut(s)	597, 631, 2441, 2475
BciT130I	CCWGG	4 cut(s)	185, 795, 1055, 1346
BciVI	GTATCC	2 cut(s)	821, 2479
BclI	TGATCA	1 cut(s)	1396
BcoDI	GTCTC	4 cut(s)	576, 1257, 1614, 2179
BfaI	CTAG	4 cut(s)	56, 1128, 1682, 1914
BfmI	CTRYAG	3 cut(s)	338, 1143, 2049
BfoI	RGCGCY	1 cut(s)	284
BfrI	CTTAAG	2 cut(s)	1132, 2102
BfuAI	ACCTGC	1 cut(s)	842
BfuI	GTATCC	2 cut(s)	821, 2479
BglII	AGATCT	1 cut(s)	583
BlpI	GCTNAGC	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	1813
Bme1390I	CCNGG	4 cut(s)	185, 795, 1055, 1346
Bme18I	GGWCC	3 cut(s)	121, 1581, 2237
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	5 cut(s)	121, 1208, 1581, 2164, 2237
BmiI	GGNNCC	2 cut(s)	282, 2238
BmrFI	CCNGG	4 cut(s)	185, 795, 1055, 1346
BmrI	ACTGGG	1 cut(s)	1647
BmuI	ACTGGG	1 cut(s)	1647
BplI	GAGNNNNNCTC	2 cut(s)	1496, 1528
BpmI	CTGGAG	6 cut(s)	403, 616, 759, 1001, 1911, 1971
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	3 cut(s)	171, 281, 1237
BsaI	GGTCTC	2 cut(s)	576, 2179
BsaJI	CCNNGG	5 cut(s)	90, 270, 306, 1290, 1408
BsaWI	WCCGGW	1 cut(s)	2009
BsaXI	ACNNNNNCTCC	4 cut(s)	732, 762, 1708, 1738
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 800, 949, 1414, 1481
Bse118I	RCCGGY	2 cut(s)	33, 283
Bse1I	ACTGG	3 cut(s)	599, 1018, 1642
Bse3DI	GCAATG	1 cut(s)	955
Bse8I	GATNNNNATC	1 cut(s)	1011
BseAI	TCCGGA	1 cut(s)	2009
BseBI	CCWGG	4 cut(s)	185, 795, 1055, 1346
BseDI	CCNNGG	5 cut(s)	90, 270, 306, 1290, 1408
BseGI	GGATG	5 cut(s)	519, 712, 1078, 2269, 2281
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	5 cut(s)	109, 800, 949, 1414, 1481
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	4 cut(s)	148, 248, 363, 2147
BseNI	ACTGG	3 cut(s)	599, 1018, 1642
BsePI	GCGCGC	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	207, 276, 438
BseSI	GKGCMC	1 cut(s)	755
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	7 cut(s)	319, 337, 340, 1063, 1126, 1129, 2350
Bsh1236I	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
Bsh1285I	CGRYCG	2 cut(s)	288, 306
BshFI	GGCC	6 cut(s)	257, 305, 311, 323, 1209, 2166
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	2 cut(s)	288, 306
BsiHKAI	GWGCWC	1 cut(s)	1927
BsiSI	CCGG	4 cut(s)	34, 258, 284, 2010
BslFI	GGGAC	2 cut(s)	1224, 2250
BslI	CCNNNNNNNGG	5 cut(s)	109, 800, 949, 1414, 1481
BsmAI	GTCTC	4 cut(s)	576, 1257, 1614, 2179
BsmFI	GGGAC	2 cut(s)	1224, 2250
BsmI	GAATGC	2 cut(s)	1435, 1980
BsnI	GGCC	6 cut(s)	257, 305, 311, 323, 1209, 2166
Bso31I	GGTCTC	2 cut(s)	576, 2179
Bsp1286I	GDGCHC	3 cut(s)	160, 755, 1927
Bsp13I	TCCGGA	1 cut(s)	2009
Bsp143I	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
Bsp1720I	GCTNAGC	1 cut(s)	234
BspANI	GGCC	6 cut(s)	257, 305, 311, 323, 1209, 2166
BspCNI	CTCAG	4 cut(s)	147, 247, 364, 2146
BspEI	TCCGGA	1 cut(s)	2009
BspFNI	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	2 cut(s)	282, 2238
BspMAI	CTGCAG	2 cut(s)	1147, 2053
BspMI	ACCTGC	1 cut(s)	842
BspPI	GGATC	4 cut(s)	63, 134, 647, 980
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	280
BspTI	CTTAAG	2 cut(s)	1132, 2102
BspTNI	GGTCTC	2 cut(s)	576, 2179
BsrDI	GCAATG	1 cut(s)	955
BsrFI	RCCGGY	2 cut(s)	33, 283
BsrI	ACTGG	3 cut(s)	599, 1018, 1642
BssAI	RCCGGY	2 cut(s)	33, 283
BssECI	CCNNGG	5 cut(s)	90, 270, 306, 1290, 1408
BssHII	GCGCGC	1 cut(s)	328
BssMI	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
BssNI	GRCGYC	3 cut(s)	171, 281, 1237
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	3 cut(s)	90, 1290, 1408
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	4 cut(s)	185, 795, 1055, 1346
Bst4CI	ACNGT	8 cut(s)	181, 701, 816, 1298, 2172, 2196, 2241, 2400
Bst6I	CTCTTC	4 cut(s)	432, 1497, 1876, 2477
BstACI	GRCGYC	3 cut(s)	171, 281, 1237
BstAFI	CTTAAG	2 cut(s)	1132, 2102
BstDEI	CTNAG	6 cut(s)	134, 234, 372, 1329, 1659, 2133
BstDSI	CCRYGG	2 cut(s)	270, 306
BstEII	GGTNACC	1 cut(s)	1768
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	5 cut(s)	519, 712, 1078, 2269, 2281
BstFNI	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 1999
BstKTI	GATC	9 cut(s)	71, 142, 586, 655, 975, 1399, 1933, 2077, 2271
BstMAI	GTCTC	4 cut(s)	576, 1257, 1614, 2179
BstMBI	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
BstMCI	CGRYCG	2 cut(s)	288, 306
BstNI	CCWGG	4 cut(s)	185, 795, 1055, 1346
BstNSI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2003
BstPI	GGTNACC	1 cut(s)	1768
BstSCI	CCNGG	4 cut(s)	183, 793, 1053, 1344
BstSFI	CTRYAG	3 cut(s)	338, 1143, 2049
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
BstV1I	GCAGC	7 cut(s)	319, 337, 340, 1063, 1126, 1129, 2350
BstX2I	RGATCY	2 cut(s)	583, 652
BstXI	CCANNNNNNTGG	2 cut(s)	968, 1409
BstYI	RGATCY	2 cut(s)	583, 652
BstZI	CGGCCG	1 cut(s)	303
BsuI	GTATCC	2 cut(s)	821, 2479
BsuRI	GGCC	6 cut(s)	257, 305, 311, 323, 1209, 2166
BtgI	CCRYGG	2 cut(s)	270, 306
BtgZI	GCGATG	1 cut(s)	1869
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	5 cut(s)	519, 712, 1078, 2269, 2281
BtsIMutI	CAGTG	7 cut(s)	592, 697, 982, 1303, 1525, 1635, 2396
BveI	ACCTGC	1 cut(s)	842
CaiI	CAGNNNCTG	1 cut(s)	1160
CciI	TCATGA	1 cut(s)	1066
CciNI	GCGGCCGC	1 cut(s)	303
CfoI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 1999
Cfr10I	RCCGGY	2 cut(s)	33, 283
Cfr13I	GGNCC	5 cut(s)	121, 1208, 1581, 2164, 2237
Cfr42I	CCGCGG	2 cut(s)	273, 309
CseI	GACGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	1053
Csp6I	GTAC	6 cut(s)	544, 812, 953, 1021, 1812, 2333
CspCI	CAANNNNNGTGG	2 cut(s)	1279, 1314
CviQI	GTAC	6 cut(s)	544, 812, 953, 1021, 1812, 2333
DdeI	CTNAG	6 cut(s)	134, 234, 372, 1329, 1659, 2133
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	9 cut(s)	70, 141, 585, 654, 974, 1398, 1932, 2076, 2270
DpnII	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
EaeI	YGGCCR	2 cut(s)	255, 303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	4 cut(s)	432, 1497, 1876, 2477
EarI	CTCTTC	4 cut(s)	432, 1497, 1876, 2477
EciI	GGCGGA	2 cut(s)	210, 234
Ecl136II	GAGCTC	1 cut(s)	1925
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	3 cut(s)	90, 1290, 1408
Eco24I	GRGCYC	2 cut(s)	160, 1927
Eco31I	GGTCTC	2 cut(s)	576, 2179
Eco47I	GGWCC	3 cut(s)	121, 1581, 2237
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	1925
Eco57I	CTGAAG	2 cut(s)	1182, 1521
Eco91I	GGTNACC	1 cut(s)	1768
EcoICRI	GAGCTC	1 cut(s)	1925
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	1581
EcoO65I	GGTNACC	1 cut(s)	1768
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	4 cut(s)	183, 793, 1053, 1344
EcoT14I	CCWWGG	3 cut(s)	90, 1290, 1408
EcoT22I	ATGCAT	2 cut(s)	847, 1437
EcoT38I	GRGCYC	2 cut(s)	160, 1927
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	3 cut(s)	90, 1290, 1408
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	2 cut(s)	1224, 2250
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	1396
FokI	GGATG	5 cut(s)	526, 699, 1085, 2276, 2288
FriOI	GRGCYC	2 cut(s)	160, 1927
FspBI	CTAG	4 cut(s)	56, 1128, 1682, 1914
GlaI	GCGC	7 cut(s)	207, 282, 318, 329, 331, 344, 1998
GsuI	CTGGAG	6 cut(s)	403, 616, 759, 1001, 1911, 1971
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	6 cut(s)	257, 305, 311, 323, 1209, 2166
HapII	CCGG	4 cut(s)	34, 258, 284, 2010
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	7 cut(s)	208, 283, 319, 330, 332, 345, 1999
Hin1I	GRCGYC	3 cut(s)	171, 281, 1237
Hin6I	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 1997
HinP1I	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 1997
HindIII	AAGCTT	1 cut(s)	2099
HinfI	GANTC	8 cut(s)	39, 296, 395, 905, 911, 1063, 1320, 2367
HpaII	CCGG	4 cut(s)	34, 258, 284, 2010
Hpy166II	GTNNAC	2 cut(s)	812, 851
Hpy8I	GTNNAC	2 cut(s)	812, 851
Hpy99I	CGWCG	5 cut(s)	17, 110, 173, 232, 253
HpyAV	CCTTC	8 cut(s)	485, 504, 726, 886, 1330, 1880, 1970, 2018
HpyCH4III	ACNGT	8 cut(s)	181, 701, 816, 1298, 2172, 2196, 2241, 2400
HpyCH4IV	ACGT	3 cut(s)	12, 789, 1237
HpyCH4V	TGCA	9 cut(s)	675, 845, 1145, 1435, 1451, 1700, 2039, 2051, 2312
HpyF3I	CTNAG	6 cut(s)	134, 234, 372, 1329, 1659, 2133
HpySE526I	ACGT	3 cut(s)	12, 789, 1237
Hsp92I	GRCGYC	3 cut(s)	171, 281, 1237
HspAI	GCGC	7 cut(s)	206, 281, 317, 328, 330, 343, 1997
KasI	GGCGCC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	2009
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	1396
KspI	CCGCGG	2 cut(s)	273, 309
Kzo9I	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	1162, 1922, 1930
Lsp1109I	GCAGC	7 cut(s)	319, 337, 340, 1063, 1126, 1129, 2350
MabI	ACCWGGT	1 cut(s)	1053
MaeI	CTAG	4 cut(s)	56, 1128, 1682, 1914
MaeII	ACGT	3 cut(s)	12, 789, 1237
MaeIII	GTNAC	6 cut(s)	164, 274, 701, 770, 1768, 2407
MalI	GATC	9 cut(s)	70, 141, 585, 654, 974, 1398, 1932, 2076, 2270
MboI	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
MflI	RGATCY	2 cut(s)	583, 652
MhlI	GDGCHC	3 cut(s)	160, 755, 1927
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	305, 404, 2376
MmeI	TCCRAC	4 cut(s)	390, 446, 1395, 2296
Mph1103I	ATGCAT	2 cut(s)	847, 1437
MroI	TCCGGA	1 cut(s)	2009
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	1980
MslI	CAYNNNNRTG	5 cut(s)	607, 726, 777, 966, 1071
MspA1I	CMGCKG	4 cut(s)	272, 308, 371, 777
MspCI	CTTAAG	2 cut(s)	1132, 2102
MspI	CCGG	4 cut(s)	34, 258, 284, 2010
MspR9I	CCNGG	4 cut(s)	185, 795, 1055, 1346
Mva1269I	GAATGC	2 cut(s)	1435, 1980
MvaI	CCWGG	4 cut(s)	185, 795, 1055, 1346
MvnI	CGCG	7 cut(s)	83, 162, 206, 272, 308, 317, 330
NaeI	GCCGGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	281
NdeII	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
NgoMIV	GCCGGC	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	282, 2238
NmuCI	GTSAC	4 cut(s)	164, 274, 770, 1768
NotI	GCGGCCGC	1 cut(s)	303
NsiI	ATGCAT	2 cut(s)	847, 1437
NspI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2003
OliI	CACNNNNGTG	1 cut(s)	777
PaeI	GCATGC	2 cut(s)	612, 1649
PagI	TCATGA	1 cut(s)	1066
PaqCI	CACCTGC	1 cut(s)	842
PauI	GCGCGC	1 cut(s)	328
PciI	ACATGT	1 cut(s)	1034
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	1435, 1980
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	1980
PfeI	GAWTC	5 cut(s)	39, 905, 911, 1063, 1320
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	800
PleI	GAGTC	3 cut(s)	304, 403, 2375
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	3 cut(s)	304, 403, 2375
PpuMI	RGGWCCY	1 cut(s)	1581
PscI	ACATGT	1 cut(s)	1034
PsiI	TTATAA	1 cut(s)	1898
Psp124BI	GAGCTC	1 cut(s)	1927
Psp5II	RGGWCCY	1 cut(s)	1581
Psp6I	CCWGG	4 cut(s)	183, 793, 1053, 1344
PspEI	GGTNACC	1 cut(s)	1768
PspGI	CCWGG	4 cut(s)	183, 793, 1053, 1344
PspN4I	GGNNCC	2 cut(s)	282, 2238
PspPI	GGNCC	5 cut(s)	121, 1208, 1581, 2164, 2237
PspPPI	RGGWCCY	1 cut(s)	1581
PstI	CTGCAG	2 cut(s)	1147, 2053
PstNI	CAGNNNCTG	1 cut(s)	1160
PsuI	RGATCY	2 cut(s)	583, 652
PsyI	GACNNNGTC	1 cut(s)	110
PteI	GCGCGC	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	777
RsaI	GTAC	6 cut(s)	545, 813, 954, 1022, 1813, 2334
RsaNI	GTAC	6 cut(s)	544, 812, 953, 1021, 1812, 2333
RseI	CAYNNNNRTG	5 cut(s)	607, 726, 777, 966, 1071
SacI	GAGCTC	1 cut(s)	1927
SacII	CCGCGG	2 cut(s)	273, 309
SapI	GCTCTTC	1 cut(s)	432
Sau3AI	GATC	9 cut(s)	68, 139, 583, 652, 972, 1396, 1930, 2074, 2268
Sau96I	GGNCC	5 cut(s)	121, 1208, 1581, 2164, 2237
ScaI	AGTACT	1 cut(s)	1813
SchI	GAGTC	3 cut(s)	305, 404, 2376
ScrFI	CCNGG	4 cut(s)	185, 795, 1055, 1346
SduI	GDGCHC	3 cut(s)	160, 755, 1927
SexAI	ACCWGGT	1 cut(s)	1053
SfcI	CTRYAG	3 cut(s)	338, 1143, 2049
SfoI	GGCGCC	1 cut(s)	282
Sfr303I	CCGCGG	2 cut(s)	273, 309
SgrBI	CCGCGG	2 cut(s)	273, 309
SinI	GGWCC	3 cut(s)	121, 1581, 2237
SmiMI	CAYNNNNRTG	5 cut(s)	607, 726, 777, 966, 1071
SmlI	CTYRAG	2 cut(s)	1132, 2102
SmoI	CTYRAG	2 cut(s)	1132, 2102
SphI	GCATGC	2 cut(s)	612, 1649
SspDI	GGCGCC	1 cut(s)	280
SspI	AATATT	2 cut(s)	1170, 1894
SspMI	CTAG	4 cut(s)	56, 1128, 1682, 1914
SstI	GAGCTC	1 cut(s)	1927
StyD4I	CCNGG	4 cut(s)	183, 793, 1053, 1344
StyI	CCWWGG	3 cut(s)	90, 1290, 1408
TaaI	ACNGT	8 cut(s)	181, 701, 816, 1298, 2172, 2196, 2241, 2400
TaiI	ACGT	3 cut(s)	15, 792, 1240
TaqI	TCGA	5 cut(s)	67, 105, 288, 640, 1387
TatI	WGTACW	3 cut(s)	1020, 1811, 2332
TauI	GCSGC	9 cut(s)	211, 214, 226, 272, 305, 308, 311, 371, 390
TfiI	GAWTC	5 cut(s)	39, 905, 911, 1063, 1320
TscAI	CASTG	7 cut(s)	599, 704, 982, 1303, 1525, 1642, 2403
TseFI	GTSAC	4 cut(s)	164, 274, 770, 1768
TseI	GCWGC	7 cut(s)	332, 350, 353, 1076, 1139, 1142, 2338
Tsp45I	GTSAC	4 cut(s)	164, 274, 770, 1768
TspDTI	ATGAA	7 cut(s)	504, 591, 996, 1212, 1569, 2154, 2343
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	7 cut(s)	599, 704, 982, 1303, 1525, 1642, 2403
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	800
Vha464I	CTTAAG	2 cut(s)	1132, 2102
VpaK11BI	GGWCC	3 cut(s)	121, 1581, 2237
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	3 cut(s)	85, 624, 1350
XceI	RCATGY	7 cut(s)	33, 612, 849, 1038, 1649, 1763, 2003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	1980
XspI	CTAG	4 cut(s)	56, 1128, 1682, 1914
ZraI	GACGTC	1 cut(s)	1238
ZrmI	AGTACT	1 cut(s)	1813
Zsp2I	ATGCAT	2 cut(s)	847, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.