Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

36388749 .. 36396076

Gene Structure 7328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1308700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGGCATTTCATGTCGCCTGCCCAATTACATGCCGGCGGATCTGCGACTGTGCTCTTGGGTTTCCGCCAGCCCTCGCCACCGGGAATGCCAAGGCCTCTTTCCTCGAAGACGTGCTGCGGCTTCACGACTTTCTCATCGATCCCTCCGGAATTAGGGCCCGCGACGATGGAAAAACGGTCCAGGTCGCGGTTCCGAAGGTCCTGCCGCCGCCTCCCCAGCCGGTTATGCCTTCGGTCGTCGGAGATGTTGCCGCCGCCGTTGTTGAGGATGAGTCCGCCGCCGCCGCTTCCTCTCAGGCCAAGCGGGCTGCTCTCCAGCGCAAGGCTGCTGCGGATATGGTCGCGGCTGAGGACTTTGCTCGGCGATTCGAGTCTGGTTATTTGTCGGACACCTCAAGAGGCGTTGTGGGTGAAGAGCAGGCTCAGTCCAATGTGAATGTTATGTGCCGGATATGCTTTTGTGGTGAAAATGAAGGAAGTGAGAGAGCAAGAAGGATGCTTCCATGCAAAACCTGTGGCAAGAAGTACCACAGGAACTGCGTAAAAGTTTGGTCTCAACACAGAGATCTATTTGACTGGAGTTCATGGACATGCCCCTTGTGCCGAATTTGTGAGGTATGCCGAAGAACAGGAGATCCAAACAAACTTATGTTCTGCAAAAGGTGTGATGGTGCTTACCATTGTTACTGCCAACATCCTTCACACAAGAATGTTTCTCCTGGACCTTATGTGTGCCCGAAACATACACAGTGTCACAGCTGTGGGTCTAAAGTCCCGGGAAATGGTTTAAGTGTGAGATGGTTTCTGGGATACACTTGCTGTGATGCATGTGGAAGATTATTTGTGAAGGGGAACTATTGTCCTGTGTGCTTGAAGGTTTATAGAGATTCGGAATCAACACCAATGGTTTGCTGTGATATTTGCCAGCGCTGGGTGCACTGCCATTGTGATGGAATCAGTGACGAGAGATATCAGCTGTATCAATTAGATGGAAATCTCCAGTACAAATGTGCTACATGCCGTGGTGAATGCTACAAGGTCAAGAATAATGAGGATGCTGTGGTAGAGCTTTGGAGGAGAAAAGACAAAGCTGAGCAAGATTTAATTTTTAGCTTGAGGGCTGCTGCAGGATTGCCAACTCAAGAAGAAATATTTTCTATTTCACCCTATTCCGATGATGAAGAAAATGGCCCTCAATTATTAAAGAATGAGTATGGGCGTCCGTTGAAATTATCTCTCAAAGGGTTAGTTGATAAGTCACCAAAAAAGACCAAGGACAGTGGAAAAAAATCTTCAAATAAAGTGTCTGCTAAGAAAAAGGAATATCAGGAGTTCTTCGTTGGTAAAACTGAAGTGATTCAGAGGTTTGGAGGACACGATGATCCTCAGTCTTTCGGATCTAGCTTGGGCTATGACAAGAATGATGAGGTGCGACCATACAAAAATGCAGAACTTGACTTATATTCTTCTCCAATAGCTGGAAGTATTAGCCACACCGAAGAGATTTGCTCTGTCAATGAGCCAGGTGTTTTGAAGCACAAGTTTGTTGATGAGGTGATGGCAAGTGATGAAGATAGAATATCCAAAGCCGTTCGTATCAAGAGTAAGTCTCATGCTCTGGATAGTGGAGAGGATACTGGAAAGCATGCTGGCAAGTCAAAACCTATTAAAGGGAAGAAGTTAGTGATAAATTTTGGTGCACGGAAGATAAATTTGACCAAGTCTCCAACATCTGATGCTTCAACGTGTCAAAGAGAACAAGATTTGGTGACTGGCATTGGCGGTGAAGATGCCAGCCAGCAGAGAGCAACTGTTATGGTGGATAGACATGATGGTTCTGCTAATGCTAAAGATAAAAGCGATTATTCTGGCCCACTGAAAGTTCCAAAGGTTTCTGGGAGAGAAGGAAATTTTATAAAGTTGGGAAAAGTTAGGTCAGGAGCTTCAGATCAGAACCCCAAATTTGAAAGAGGGGATAAGGCTGATGGATATGAAGCCATTCAACCTGAGCAGACACCTGTTTCTTTTGGAAAAGGCATTGAAGGAGGCATGACTGCAGCTGTGCCTGTAGGTGAAGTCCCGACTTTAAGAAATGACAGGGTGTATTCTCGGAAGCATTCACATAGCAGGTCTAACATACGTACTGAAACCAATGATGCATATGCTCAAACATCCGTGTCACATTCTTCGTCAAAAGATACCAAACCAACTTCGCTGAAGTTTAAGCTCAAGAAACCTAATACTGAAAATCAGAGTTCTTATCTTGAGGAAGAAAAAAGTTGCGTCAAGGGCCAACGGTCAAAAAGAAAGAGACCATCGTCGTTTGGGGAGAAGACATCATTTAGTGAGAATGATTCCAAGCCACAATCAGTTCATAATGTAATGGATGAGATTGATGTTAATTGGATATTGAAAAAATTGGGCAGAGATGCAATCGGAAAGCGAGTTGAAGTTCAGCAGCTATCTGACAATTCATGGCATAAGGGAGTGGTTAGCGAAGTTATCGAAGGCACGTCAACGTTATCTGTTACTCTAGATGACGGCAAAGTCAAATCTCTGGAACTGGGGAAGCAAGGGGTTCGATTTGTATCTCAAAAGCAGAAAGGGTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

873

Amino Acids

96.33

Weight (kDa)

8.84

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	204 - 247	8.2e-06	PHD-finger
PHDvar_NSD	PF23004	204 - 249	7.3e-06	Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1916
AasI	GACNNNNNNGTC	1 cut(s)	2546
Acc36I	ACCTGC	1 cut(s)	2118
AccB7I	CCANNNNNTGG	1 cut(s)	1478
AccII	CGCG	3 cut(s)	162, 188, 344
AccIII	TCCGGA	1 cut(s)	146
AclI	AACGTT	1 cut(s)	2519
AclWI	GGATC	5 cut(s)	47, 134, 629, 1376, 1405
AcsI	RAATTY	5 cut(s)	606, 1690, 1711, 1909, 1961
AcuI	CTGAAG	3 cut(s)	1371, 1929, 2237
AcyI	GRCGYC	1 cut(s)	1219
AfaI	GTAC	3 cut(s)	527, 1004, 2143
AfeI	AGCGCT	1 cut(s)	929
AfiI	CCNNNNNNNGG	7 cut(s)	153, 187, 322, 782, 931, 1478, 1670
AflIII	ACRYGT	1 cut(s)	1745
AjiI	CACGTC	2 cut(s)	112, 2514
AjnI	CCWGG	3 cut(s)	180, 718, 1522
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	759
AloI	GAACNNNNNNTCC	2 cut(s)	619, 651
Alw21I	GWGCWC	3 cut(s)	55, 939, 1702
Alw26I	GTCTC	4 cut(s)	558, 1614, 1728, 2305
Alw44I	GTGCAC	2 cut(s)	935, 1698
AlwI	GGATC	5 cut(s)	47, 134, 629, 1376, 1405
AlwNI	CAGNNNCTG	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	775
Aor13HI	TCCGGA	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	929
AoxI	GGCC	6 cut(s)	93, 156, 297, 1189, 1870, 2290
ApaI	GGGCCC	1 cut(s)	160
ApaLI	GTGCAC	2 cut(s)	935, 1698
ApeKI	GCWGC	8 cut(s)	115, 308, 326, 329, 1121, 1124, 2057, 2458
ApoI	RAATTY	5 cut(s)	606, 1690, 1711, 1909, 1961
ArsI	GACNNNNNNTTYG	2 cut(s)	1289, 1321
Asp700I	GAANNNNTTC	2 cut(s)	1356, 1998
AspLEI	GCGC	2 cut(s)	321, 930
AspS9I	GGNCC	8 cut(s)	156, 157, 178, 199, 722, 1190, 1871, 2290
AsuC2I	CCSGG	3 cut(s)	82, 776, 777
AsuHPI	GGTGA	9 cut(s)	422, 476, 1037, 1155, 1251, 1567, 1780, 1796, 2084
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	3 cut(s)	178, 199, 722
BaeGI	GKGCMC	4 cut(s)	160, 737, 939, 1702
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	114, 2339
Bbv12I	GWGCWC	3 cut(s)	55, 939, 1702
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	8 cut(s)	102, 295, 313, 316, 1108, 1111, 2069, 2470
BccI	CCATC	9 cut(s)	161, 662, 792, 944, 983, 1552, 1826, 1979, 2323
BceAI	ACGGC	4 cut(s)	242, 1005, 1574, 2557
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 2561, 2595
BciT130I	CCWGG	3 cut(s)	182, 720, 1524
BciVI	GTATCC	2 cut(s)	803, 1627
BcnI	CCSGG	3 cut(s)	82, 776, 777
BcoDI	GTCTC	4 cut(s)	558, 1614, 1728, 2305
BfaI	CTAG	2 cut(s)	1401, 2534
BfmI	CTRYAG	3 cut(s)	1125, 2055, 2067
BfoI	RGCGCY	1 cut(s)	931
BfuAI	ACCTGC	1 cut(s)	2118
BfuI	GTATCC	2 cut(s)	803, 1627
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	565
BlpI	GCTNAGC	1 cut(s)	1092
Bme1390I	CCNGG	6 cut(s)	82, 182, 720, 776, 777, 1524
Bme18I	GGWCC	3 cut(s)	178, 199, 722
BmeT110I	CYCGRG	1 cut(s)	775
BmgBI	CACGTC	2 cut(s)	112, 2514
BmgT120I	GGNCC	8 cut(s)	156, 157, 178, 199, 722, 1190, 1871, 2290
BmiI	GGNNCC	2 cut(s)	158, 192
BmrFI	CCNGG	6 cut(s)	82, 182, 720, 776, 777, 1524
BmrI	ACTGGG	1 cut(s)	2573
BmsI	GCATC	7 cut(s)	486, 814, 1045, 1726, 1780, 2146, 2419
BmuI	ACTGGG	1 cut(s)	2573
BoxI	GACNNNNGTC	1 cut(s)	2317
BpiI	GAAGAC	2 cut(s)	114, 2339
BplI	GAGNNNNNCTC	4 cut(s)	1493, 1525, 1594, 1626
BpmI	CTGGAG	3 cut(s)	299, 598, 983
Bpu10I	CCTNAGC	2 cut(s)	348, 2007
Bpu1102I	GCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	5 cut(s)	379, 1125, 1135, 2213, 2285
BpuMI	CCSGG	3 cut(s)	82, 776, 777
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	2141
BsaBI	GATNNNNATC	2 cut(s)	993, 2587
BsaHI	GRCGYC	1 cut(s)	1219
BsaI	GGTCTC	2 cut(s)	558, 2305
BsaJI	CCNNGG	4 cut(s)	90, 775, 1021, 1272
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	1708, 1738
Bsc4I	CCNNNNNNNGG	7 cut(s)	153, 187, 322, 782, 931, 1478, 1670
Bse118I	RCCGGY	2 cut(s)	33, 220
Bse1I	ACTGG	5 cut(s)	581, 1000, 1642, 1777, 2568
Bse8I	GATNNNNATC	2 cut(s)	993, 2587
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	182, 720, 1524
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	90, 775, 1021, 1272
BseGI	GGATG	6 cut(s)	274, 501, 694, 1060, 2171, 2392
BseJI	GATNNNNATC	2 cut(s)	993, 2587
BseLI	CCNNNNNNNGG	7 cut(s)	153, 187, 322, 782, 931, 1478, 1670
BseMII	CTCAG	6 cut(s)	308, 339, 437, 1083, 1400, 1998
BseNI	ACTGG	5 cut(s)	581, 1000, 1642, 1777, 2568
BseRI	GAGGAG	1 cut(s)	1090
BseSI	GKGCMC	4 cut(s)	160, 737, 939, 1702
BseXI	GCAGC	8 cut(s)	102, 295, 313, 316, 1108, 1111, 2069, 2470
BseYI	CCCAGC	2 cut(s)	216, 930
Bsh1236I	CGCG	3 cut(s)	162, 188, 344
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	6 cut(s)	95, 158, 299, 1191, 1872, 2292
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	3 cut(s)	55, 939, 1702
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	6 cut(s)	34, 81, 147, 221, 448, 776
BslFI	GGGAC	2 cut(s)	758, 2063
BslI	CCNNNNNNNGG	7 cut(s)	153, 187, 322, 782, 931, 1478, 1670
BsmAI	GTCTC	4 cut(s)	558, 1614, 1728, 2305
BsmFI	GGGAC	2 cut(s)	758, 2063
BsmI	GAATGC	3 cut(s)	91, 1034, 2116
BsnI	GGCC	6 cut(s)	95, 158, 299, 1191, 1872, 2292
Bso31I	GGTCTC	2 cut(s)	558, 2305
BsoBI	CYCGRG	1 cut(s)	775
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	5 cut(s)	55, 160, 737, 939, 1702
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
Bsp1720I	GCTNAGC	1 cut(s)	1092
BspANI	GGCC	6 cut(s)	95, 158, 299, 1191, 1872, 2292
BspCNI	CTCAG	6 cut(s)	307, 340, 436, 1084, 1399, 1999
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	3 cut(s)	162, 188, 344
BspLI	GGNNCC	2 cut(s)	158, 192
BspMAI	CTGCAG	2 cut(s)	1129, 2059
BspMI	ACCTGC	1 cut(s)	2118
BspPI	GGATC	5 cut(s)	47, 134, 629, 1376, 1405
BspQI	GCTCTTC	1 cut(s)	408
BspTNI	GGTCTC	2 cut(s)	558, 2305
BsrFI	RCCGGY	2 cut(s)	33, 220
BsrI	ACTGG	5 cut(s)	581, 1000, 1642, 1777, 2568
BssAI	RCCGGY	2 cut(s)	33, 220
BssECI	CCNNGG	4 cut(s)	90, 775, 1021, 1272
BssMI	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
BssNI	GRCGYC	1 cut(s)	1219
BssT1I	CCWWGG	2 cut(s)	90, 1272
Bst2UI	CCWGG	3 cut(s)	182, 720, 1524
Bst4CI	ACNGT	6 cut(s)	50, 178, 750, 1280, 1813, 2298
Bst6I	CTCTTC	2 cut(s)	408, 1494
BstACI	GRCGYC	1 cut(s)	1219
BstBAI	YACGTR	1 cut(s)	2141
BstDEI	CTNAG	7 cut(s)	294, 348, 423, 1092, 1311, 1386, 2007
BstDSI	CCRYGG	1 cut(s)	1021
BstENI	CCTNNNNNAGG	1 cut(s)	1668
BstF5I	GGATG	6 cut(s)	274, 501, 694, 1060, 2171, 2392
BstFNI	CGCG	3 cut(s)	162, 188, 344
BstH2I	RGCGCY	1 cut(s)	931
BstHHI	GCGC	2 cut(s)	321, 930
BstKTI	GATC	7 cut(s)	42, 142, 568, 637, 1384, 1400, 1951
BstMAI	GTCTC	4 cut(s)	558, 1614, 1728, 2305
BstMBI	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	8 cut(s)	217, 226, 284, 305, 453, 600, 934, 2289
BstNI	CCWGG	3 cut(s)	182, 720, 1524
BstNSI	RCATGY	5 cut(s)	33, 594, 831, 1020, 1649
BstPAI	GACNNNNGTC	1 cut(s)	2317
BstSCI	CCNGG	6 cut(s)	80, 180, 718, 774, 775, 1522
BstSFI	CTRYAG	3 cut(s)	1125, 2055, 2067
BstSLI	GKGCMC	4 cut(s)	160, 737, 939, 1702
BstSNI	TACGTA	1 cut(s)	2141
BstUI	CGCG	3 cut(s)	162, 188, 344
BstV1I	GCAGC	8 cut(s)	102, 295, 313, 316, 1108, 1111, 2069, 2470
BstV2I	GAAGAC	2 cut(s)	114, 2339
BstX2I	RGATCY	4 cut(s)	39, 565, 634, 1397
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	4 cut(s)	39, 565, 634, 1397
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	803, 1627
BsuRI	GGCC	6 cut(s)	95, 158, 299, 1191, 1872, 2292
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	1021
BtrI	CACGTC	2 cut(s)	112, 2514
BtsCI	GGATG	6 cut(s)	274, 501, 694, 1060, 2171, 2392
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	5 cut(s)	755, 937, 964, 1285, 1874
BveI	ACCTGC	1 cut(s)	2118
CaiI	CAGNNNCTG	1 cut(s)	537
CfoI	GCGC	2 cut(s)	321, 930
Cfr10I	RCCGGY	2 cut(s)	33, 220
Cfr13I	GGNCC	8 cut(s)	156, 157, 178, 199, 722, 1190, 1871, 2290
Cfr9I	CCCGGG	1 cut(s)	775
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	1208, 2272
Csp6I	GTAC	3 cut(s)	526, 1003, 2142
CspCI	CAANNNNNGTGG	4 cut(s)	496, 531, 1261, 1296
CviQI	GTAC	3 cut(s)	526, 1003, 2142
DdeI	CTNAG	7 cut(s)	294, 348, 423, 1092, 1311, 1386, 2007
DpnI	GATC	7 cut(s)	41, 141, 567, 636, 1383, 1399, 1950
DpnII	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
DrdI	GACNNNNNNGTC	1 cut(s)	2546
DseDI	GACNNNNNNGTC	1 cut(s)	2546
Eam1104I	CTCTTC	2 cut(s)	408, 1494
EarI	CTCTTC	2 cut(s)	408, 1494
EciI	GGCGGA	3 cut(s)	52, 54, 265
Eco105I	TACGTA	1 cut(s)	2141
Eco130I	CCWWGG	2 cut(s)	90, 1272
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	558, 2305
Eco32I	GATATC	1 cut(s)	971
Eco47I	GGWCC	3 cut(s)	178, 199, 722
Eco47III	AGCGCT	1 cut(s)	929
Eco57I	CTGAAG	3 cut(s)	1371, 1929, 2237
Eco88I	CYCGRG	1 cut(s)	775
EcoNI	CCTNNNNNAGG	1 cut(s)	1668
EcoO109I	RGGNCCY	2 cut(s)	156, 199
EcoRII	CCWGG	3 cut(s)	180, 718, 1522
EcoRV	GATATC	1 cut(s)	971
EcoT14I	CCWWGG	2 cut(s)	90, 1272
EcoT22I	ATGCAT	2 cut(s)	829, 2161
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	90, 1272
FaqI	GGGAC	2 cut(s)	758, 2063
FauI	CCCGC	2 cut(s)	167, 297
FauNDI	CATATG	1 cut(s)	2161
FokI	GGATG	6 cut(s)	281, 508, 681, 1067, 2158, 2399
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	1401, 2534
GlaI	GCGC	2 cut(s)	320, 929
GsaI	CCCAGC	2 cut(s)	220, 934
GsuI	CTGGAG	3 cut(s)	299, 598, 983
HaeII	RGCGCY	1 cut(s)	931
HaeIII	GGCC	6 cut(s)	95, 158, 299, 1191, 1872, 2292
HapII	CCGG	6 cut(s)	34, 81, 147, 221, 448, 776
HgaI	GACGC	2 cut(s)	1208, 2272
HhaI	GCGC	2 cut(s)	321, 930
Hin1I	GRCGYC	1 cut(s)	1219
Hin6I	GCGC	2 cut(s)	319, 928
HinP1I	GCGC	2 cut(s)	319, 928
HincII	GTYRAC	1 cut(s)	2517
HindII	GTYRAC	1 cut(s)	2517
HinfI	GANTC	8 cut(s)	272, 366, 371, 887, 893, 954, 1357, 2354
HpaII	CCGG	6 cut(s)	34, 81, 147, 221, 448, 776
HphI	GGTGA	9 cut(s)	422, 476, 1037, 1155, 1251, 1567, 1780, 1796, 2084
Hpy166II	GTNNAC	3 cut(s)	937, 1700, 2517
Hpy8I	GTNNAC	3 cut(s)	937, 1700, 2517
Hpy99I	CGWCG	3 cut(s)	167, 242, 2323
HpyCH4III	ACNGT	6 cut(s)	50, 178, 750, 1280, 1813, 2298
HpyCH4IV	ACGT	5 cut(s)	111, 1745, 2140, 2513, 2519
HpyF10VI	GCNNNNNNNGC	8 cut(s)	217, 226, 284, 305, 453, 600, 934, 2289
HpyF3I	CTNAG	7 cut(s)	294, 348, 423, 1092, 1311, 1386, 2007
HpySE526I	ACGT	5 cut(s)	111, 1745, 2140, 2513, 2519
Hsp92I	GRCGYC	1 cut(s)	1219
HspAI	GCGC	2 cut(s)	319, 928
Kpn2I	TCCGGA	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Kzo9I	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	1940
Lsp1109I	GCAGC	8 cut(s)	102, 295, 313, 316, 1108, 1111, 2069, 2470
LweI	GCATC	7 cut(s)	486, 814, 1045, 1726, 1780, 2146, 2419
MaeI	CTAG	2 cut(s)	1401, 2534
MaeII	ACGT	5 cut(s)	111, 1745, 2140, 2513, 2519
MaeIII	GTNAC	7 cut(s)	683, 752, 959, 1257, 1768, 2178, 2527
MalI	GATC	7 cut(s)	41, 141, 567, 636, 1383, 1399, 1950
MboI	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
MflI	RGATCY	4 cut(s)	39, 565, 634, 1397
MhlI	GDGCHC	5 cut(s)	55, 160, 737, 939, 1702
MlyI	GAGTC	2 cut(s)	281, 380
MmeI	TCCRAC	3 cut(s)	220, 366, 1751
Mph1103I	ATGCAT	2 cut(s)	829, 2161
MroI	TCCGGA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	2 cut(s)	1356, 1998
MseI	TTAA	7 cut(s)	788, 1103, 1202, 1668, 2087, 2223, 2400
MslI	CAYNNNNRTG	4 cut(s)	589, 708, 759, 948
MspA1I	CMGCKG	3 cut(s)	759, 976, 2060
MspI	CCGG	6 cut(s)	34, 81, 147, 221, 448, 776
MspR9I	CCNGG	6 cut(s)	82, 182, 720, 776, 777, 1524
Mva1269I	GAATGC	3 cut(s)	91, 1034, 2116
MvaI	CCWGG	3 cut(s)	182, 720, 1524
MvnI	CGCG	3 cut(s)	162, 188, 344
MwoI	GCNNNNNNNGC	8 cut(s)	217, 226, 284, 305, 453, 600, 934, 2289
NaeI	GCCGGC	1 cut(s)	35
NciI	CCSGG	3 cut(s)	82, 776, 777
NdeI	CATATG	1 cut(s)	2161
NdeII	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
NgoMIV	GCCGGC	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	158, 192
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	5 cut(s)	752, 959, 1257, 1768, 2178
NsiI	ATGCAT	2 cut(s)	829, 2161
NspI	RCATGY	5 cut(s)	33, 594, 831, 1020, 1649
OliI	CACNNNNGTG	1 cut(s)	759
PaeI	GCATGC	1 cut(s)	1649
PceI	AGGCCT	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	408
PctI	GAATGC	3 cut(s)	91, 1034, 2116
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	1356, 1998
PfeI	GAWTC	6 cut(s)	366, 887, 893, 954, 1357, 2354
PflFI	GACNNNGTC	1 cut(s)	1720
PflMI	CCANNNNNTGG	1 cut(s)	1478
PfoI	TCCNGGA	1 cut(s)	718
PleI	GAGTC	2 cut(s)	280, 379
PpsI	GAGTC	2 cut(s)	280, 379
Ppu21I	YACGTR	1 cut(s)	2141
PpuMI	RGGWCCY	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	2317
PsiI	TTATAA	1 cut(s)	1916
Psp1406I	AACGTT	1 cut(s)	2519
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	180, 718, 1522
PspFI	CCCAGC	2 cut(s)	216, 930
PspGI	CCWGG	3 cut(s)	180, 718, 1522
PspN4I	GGNNCC	2 cut(s)	158, 192
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	8 cut(s)	156, 157, 178, 199, 722, 1190, 1871, 2290
PspPPI	RGGWCCY	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	1129, 2059
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	4 cut(s)	39, 565, 634, 1397
PsyI	GACNNNGTC	1 cut(s)	1720
PvuII	CAGCTG	3 cut(s)	759, 976, 2060
RsaI	GTAC	3 cut(s)	527, 1004, 2143
RsaNI	GTAC	3 cut(s)	526, 1003, 2142
RseI	CAYNNNNRTG	4 cut(s)	589, 708, 759, 948
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	788, 1103, 1202, 1668, 2087, 2223, 2400
Sau3AI	GATC	7 cut(s)	39, 139, 565, 634, 1381, 1397, 1948
Sau96I	GGNCC	8 cut(s)	156, 157, 178, 199, 722, 1190, 1871, 2290
SchI	GAGTC	2 cut(s)	281, 380
ScrFI	CCNGG	6 cut(s)	82, 182, 720, 776, 777, 1524
SduI	GDGCHC	5 cut(s)	55, 160, 737, 939, 1702
SfaNI	GCATC	7 cut(s)	486, 814, 1045, 1726, 1780, 2146, 2419
SfcI	CTRYAG	3 cut(s)	1125, 2055, 2067
SinI	GGWCC	3 cut(s)	178, 199, 722
SmaI	CCCGGG	1 cut(s)	777
SmiMI	CAYNNNNRTG	4 cut(s)	589, 708, 759, 948
SmlI	CTYRAG	5 cut(s)	394, 1114, 1140, 2228, 2264
SmoI	CTYRAG	5 cut(s)	394, 1114, 1140, 2228, 2264
SnaBI	TACGTA	1 cut(s)	2141
SphI	GCATGC	1 cut(s)	1649
SseBI	AGGCCT	1 cut(s)	95
SspI	AATATT	1 cut(s)	1152
SspMI	CTAG	2 cut(s)	1401, 2534
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	6 cut(s)	80, 180, 718, 774, 775, 1522
StyI	CCWWGG	2 cut(s)	90, 1272
TaaI	ACNGT	6 cut(s)	50, 178, 750, 1280, 1813, 2298
TaiI	ACGT	5 cut(s)	114, 1748, 2143, 2516, 2522
TaqI	TCGA	5 cut(s)	105, 138, 369, 2505, 2581
TaqII	GACCGA	1 cut(s)	223
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	9 cut(s)	121, 208, 211, 254, 257, 281, 284, 287, 347
TfiI	GAWTC	6 cut(s)	366, 887, 893, 954, 1357, 2354
Tru1I	TTAA	7 cut(s)	788, 1103, 1202, 1668, 2087, 2223, 2400
Tru9I	TTAA	7 cut(s)	788, 1103, 1202, 1668, 2087, 2223, 2400
TscAI	CASTG	5 cut(s)	755, 944, 964, 1285, 1881
TseFI	GTSAC	5 cut(s)	752, 959, 1257, 1768, 2178
TseI	GCWGC	8 cut(s)	115, 308, 326, 329, 1121, 1124, 2057, 2458
Tsp45I	GTSAC	5 cut(s)	752, 959, 1257, 1768, 2178
TspDTI	ATGAA	7 cut(s)	486, 573, 1194, 1584, 2007, 2363, 2463
TspGWI	ACGGA	3 cut(s)	1212, 1717, 2164
TspMI	CCCGGG	1 cut(s)	775
TspRI	CASTG	5 cut(s)	755, 944, 964, 1285, 1881
Tth111I	GACNNNGTC	1 cut(s)	1720
Van91I	CCANNNNNTGG	1 cut(s)	1478
VneI	GTGCAC	2 cut(s)	935, 1698
VpaK11BI	GGWCC	3 cut(s)	178, 199, 722
XagI	CCTNNNNNAGG	1 cut(s)	1668
XapI	RAATTY	5 cut(s)	606, 1690, 1711, 1909, 1961
XbaI	TCTAGA	1 cut(s)	2533
XceI	RCATGY	5 cut(s)	33, 594, 831, 1020, 1649
XmaI	CCCGGG	1 cut(s)	775
XmnI	GAANNNNTTC	2 cut(s)	1356, 1998
XspI	CTAG	2 cut(s)	1401, 2534
Zsp2I	ATGCAT	2 cut(s)	829, 2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.