Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

875510 .. 877939

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGATGATCCATCAGTCCTTTGGATCTAGCTTGGGCTATGACAAGAATAATGAGATGCGGCCCTACAAAAATACAGAACTAGATTTATATTCTTCGCCTATAGCTGGAAGTATTGGCCACACCGAAGAGATTTGCTCTGTCAATGAGCCAGGTGTTTTGAAGCACAAGTTTGTTGATGAGGTGATGGCGAGTGAGGAAGATAGGGCTTCCAAAGTCGTTCGTATCAAGGATAAGTCTCATGGTCTGGATAGTGGAGAGGATACTGGAAAGCATGCTGGCAAGTCAAAGCCTGTTAAAGGGAAGAAGTTAGTGATAAATTTTGGTGCACGGAAGATAAATTTGCCCAAGTCTCCAACATCTGATGCTTCAACCTGTCAAAGAGAGCAAGATTTGTTGACTTCCAATGCCGGTGAAGATGCCAACCAGCAGAGAGCACCTGTTATGGTGGATAGACATGATGGTTTGGTTAATGCTAAAGATAGAAGTGATTATTCTAGCCCCTTGAAAGTTCCAAAGGTTTCTGGGAGAGAAGGAAACTTTATAAAGTTGGGAAAAGTTAGGTCCGGAGCTTCTGATCATAACCCCAAATTTGCAAGAGGGGATAAGGCTGATGAATATGAAGCCATTCAACCTGAGCAGACACCTGTTTCGTTTGGAAAAGGCATTGAAGGAGGCACGACTGCAGCTGTGCCTGTAGGTGAAGTCCCGACTTTAAGAAATGACAGGGTATATTCCCGGAAGCATTCACATGGCAGGTCTAATATACGTACTGAAACCAATGATTACGCTCAGACACCCGTGTCACATTCTTCGTCAAAAGATGCCAAACCTCCGTCATTGAAGTTTAAGCTCAAGAAGCCTAATATTGAAAATCAGAATTCTTCTCATCATGAGGAAGAAAAAAGTTACGTCAAGGGCCAGCGGTCAAAAAGAAAGAGACCATCACCGTTTATGGAGAAGACATCATTTGGTGAGAATGATGACAAGACACAATCAGTTCAGGATAATGTAATGGATGAGATGGATGTTAACTGGATATTGAAAAAATTGGGCAGAGATGCAATCGGAAAGCGAGTTGAAGTTCAGCAGCTATCTGACAATTCATGGCATAAGGGAGTGGTTAGCAATGTTATCGAAGGCATGTCAACATTATCTGTAACTTTAGATGATGGCAAAGTCAAATCTCTAGAACTTGGGAAGCAAGGGGTTCGATTTGTATCTCAAAAGCATAAGAGGCCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

416

Amino Acids

45.97

Weight (kDa)

9.34

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AasI	GACNNNNNNGTC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	2 cut(s)	58, 922
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	4 cut(s)	316, 337, 587, 877
AfaI	GTAC	1 cut(s)	769
AfiI	CCNNNNNNNGG	2 cut(s)	104, 296
AgsI	TTSAA	9 cut(s)	160, 369, 505, 629, 668, 841, 869, 1042, 1079
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	6 cut(s)	30, 104, 569, 686, 850, 1090
AluI	AGCT	6 cut(s)	30, 104, 569, 686, 850, 1090
Alw21I	GWGCWC	2 cut(s)	328, 436
Alw26I	GTCTC	3 cut(s)	240, 354, 931
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	4 cut(s)	59, 115, 916, 1235
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	683, 1087
ApoI	RAATTY	4 cut(s)	316, 337, 587, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp700I	GAANNNNTTC	1 cut(s)	624
AspS9I	GGNCC	3 cut(s)	60, 561, 916
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	5 cut(s)	193, 422, 710, 936, 983
AvaII	GGWCC	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	2 cut(s)	328, 436
BbvI	GCAGC	2 cut(s)	695, 1099
BccI	CCATC	6 cut(s)	18, 178, 452, 949, 1015, 1163
BcgI	CGANNNNNNTGC	4 cut(s)	1114, 1148, 1190, 1224
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	240, 354, 931
BfaI	CTAG	4 cut(s)	27, 80, 495, 1187
BfmI	CTRYAG	3 cut(s)	99, 681, 693
BfuAI	ACCTGC	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	3 cut(s)	59, 684, 1088
BlsI	GCNGC	3 cut(s)	60, 685, 1089
Bme1390I	CCNGG	2 cut(s)	150, 736
Bme18I	GGWCC	1 cut(s)	561
BmgT120I	GGNCC	3 cut(s)	60, 561, 916
BmrFI	CCNGG	2 cut(s)	150, 736
BmsI	GCATC	5 cut(s)	45, 352, 406, 811, 1048
BpiI	GAAGAC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	1216
BsaI	GGTCTC	1 cut(s)	931
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 296
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	268, 1037
Bse3DI	GCAATG	1 cut(s)	1132
Bse8I	GATNNNNATC	1 cut(s)	1216
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	1021, 1030
BseJI	GATNNNNATC	1 cut(s)	1216
BseLI	CCNNNNNNNGG	2 cut(s)	104, 296
BseMI	GCAATG	1 cut(s)	1132
BseMII	CTCAG	2 cut(s)	624, 803
BseNI	ACTGG	2 cut(s)	268, 1037
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	695, 1099
BshFI	GGCC	4 cut(s)	61, 117, 918, 1237
BsiHKAI	GWGCWC	2 cut(s)	328, 436
BsiSI	CCGG	3 cut(s)	408, 564, 736
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	104, 296
BsmAI	GTCTC	3 cut(s)	240, 354, 931
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	4 cut(s)	61, 117, 918, 1237
Bso31I	GGTCTC	1 cut(s)	931
Bsp1286I	GDGCHC	2 cut(s)	328, 436
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	3 cut(s)	6, 23, 574
BspACI	CCGC	2 cut(s)	58, 922
BspANI	GGCC	4 cut(s)	61, 117, 918, 1237
BspCNI	CTCAG	2 cut(s)	625, 802
BspEI	TCCGGA	1 cut(s)	563
BspHI	TCATGA	1 cut(s)	889
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	1132
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	268, 1037
BssAI	RCCGGY	1 cut(s)	407
BssMI	GATC	3 cut(s)	6, 23, 574
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	948
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	273, 277, 920
BstDEI	CTNAG	2 cut(s)	633, 789
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	1021, 1030
BstKTI	GATC	3 cut(s)	9, 26, 577
BstMAI	GTCTC	3 cut(s)	240, 354, 931
BstMBI	GATC	3 cut(s)	6, 23, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	856, 1234
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	2 cut(s)	275, 1144
BstSCI	CCNGG	2 cut(s)	148, 734
BstSFI	CTRYAG	3 cut(s)	99, 681, 693
BstSLI	GKGCMC	1 cut(s)	328
BstSNI	TACGTA	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	695, 1099
BstV2I	GAAGAC	1 cut(s)	965
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	61, 117, 918, 1237
BtsCI	GGATG	2 cut(s)	1021, 1030
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	3 cut(s)	273, 277, 920
CciI	TCATGA	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	60, 561, 916
Csp6I	GTAC	1 cut(s)	768
CviAII	CATG	8 cut(s)	239, 272, 455, 749, 890, 1104, 1141, 1245
CviQI	GTAC	1 cut(s)	768
DdeI	CTNAG	2 cut(s)	633, 789
DpnI	GATC	3 cut(s)	8, 25, 576
DpnII	GATC	3 cut(s)	6, 23, 574
DrdI	GACNNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	799
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	561
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	8 cut(s)	242, 275, 458, 752, 893, 1107, 1144, 1248
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	8 cut(s)	238, 271, 454, 748, 889, 1103, 1140, 1244
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	59, 684, 1088
FokI	GGATG	2 cut(s)	1028, 1037
Fsp4HI	GCNGC	3 cut(s)	59, 684, 1088
FspBI	CTAG	4 cut(s)	27, 80, 495, 1187
GluI	GCNGC	3 cut(s)	59, 684, 1088
HaeIII	GGCC	4 cut(s)	61, 117, 918, 1237
HapII	CCGG	3 cut(s)	408, 564, 736
Hin1II	CATG	8 cut(s)	242, 275, 458, 752, 893, 1107, 1144, 1248
HincII	GTYRAC	3 cut(s)	396, 1030, 1146
HindII	GTYRAC	3 cut(s)	396, 1030, 1146
HpaI	GTTAAC	1 cut(s)	1030
HpaII	CCGG	3 cut(s)	408, 564, 736
HphI	GGTGA	5 cut(s)	193, 422, 710, 936, 983
Hpy166II	GTNNAC	4 cut(s)	326, 396, 1030, 1146
Hpy188I	TCNGA	6 cut(s)	361, 574, 792, 876, 1067, 1096
Hpy188III	TCNNGA	7 cut(s)	245, 564, 706, 853, 890, 1001, 1187
Hpy8I	GTNNAC	4 cut(s)	326, 396, 1030, 1146
HpyAV	CCTTC	3 cut(s)	524, 662, 1130
HpyCH4III	ACNGT	1 cut(s)	948
HpyCH4IV	ACGT	2 cut(s)	766, 909
HpyCH4V	TGCA	4 cut(s)	326, 593, 683, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	856, 1234
HpyF3I	CTNAG	2 cut(s)	633, 789
HpySE526I	ACGT	2 cut(s)	766, 909
Hsp92II	CATG	8 cut(s)	242, 275, 458, 752, 893, 1107, 1144, 1248
Kpn2I	TCCGGA	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	574
KspAI	GTTAAC	1 cut(s)	1030
Kzo9I	GATC	3 cut(s)	6, 23, 574
LmnI	GCTCC	1 cut(s)	566
Lsp1109I	GCAGC	2 cut(s)	695, 1099
LweI	GCATC	5 cut(s)	45, 352, 406, 811, 1048
MaeI	CTAG	4 cut(s)	27, 80, 495, 1187
MaeII	ACGT	2 cut(s)	766, 909
MaeIII	GTNAC	3 cut(s)	801, 905, 1156
MalI	GATC	3 cut(s)	8, 25, 576
MboI	GATC	3 cut(s)	6, 23, 574
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	328, 436
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	6 cut(s)	316, 337, 587, 877, 1046, 1099
MluNI	TGGCCA	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	8 cut(s)	172, 187, 250, 590, 665, 840, 886, 1227
Mox20I	TGGCCA	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	5 cut(s)	294, 468, 713, 846, 1029
MslI	CAYNNNNRTG	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	686, 922
MspI	CCGG	3 cut(s)	408, 564, 736
MspR9I	CCNGG	2 cut(s)	150, 736
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	856, 1234
NciI	CCSGG	1 cut(s)	736
NdeII	GATC	3 cut(s)	6, 23, 574
NlaIII	CATG	8 cut(s)	242, 275, 458, 752, 893, 1107, 1144, 1248
NmuCI	GTSAC	1 cut(s)	801
NspI	RCATGY	2 cut(s)	275, 1144
PaeI	GCATGC	1 cut(s)	275
PagI	TCATGA	1 cut(s)	889
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	1 cut(s)	624
PfoI	TCCNGGA	1 cut(s)	734
PkrI	GCNGC	3 cut(s)	60, 685, 1089
Ppu21I	YACGTR	1 cut(s)	767
PsiI	TTATAA	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	60, 561, 916
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	5 cut(s)	294, 468, 713, 846, 1029
SatI	GCNGC	3 cut(s)	59, 684, 1088
Sau3AI	GATC	3 cut(s)	6, 23, 574
Sau96I	GGNCC	3 cut(s)	60, 561, 916
ScrFI	CCNGG	2 cut(s)	150, 736
SduI	GDGCHC	2 cut(s)	328, 436
SfaNI	GCATC	5 cut(s)	45, 352, 406, 811, 1048
SfcI	CTRYAG	3 cut(s)	99, 681, 693
SinI	GGWCC	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
SnaBI	TACGTA	1 cut(s)	767
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	6 cut(s)	316, 337, 587, 877, 1046, 1099
SsiI	CCGC	2 cut(s)	58, 922
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	4 cut(s)	27, 80, 495, 1187
StyD4I	CCNGG	2 cut(s)	148, 734
TaaI	ACNGT	1 cut(s)	948
TaiI	ACGT	2 cut(s)	769, 912
TaqI	TCGA	2 cut(s)	1134, 1210
TasI	AATT	6 cut(s)	316, 337, 587, 877, 1046, 1099
TauI	GCSGC	1 cut(s)	61
Tru1I	TTAA	5 cut(s)	294, 468, 713, 846, 1029
Tru9I	TTAA	5 cut(s)	294, 468, 713, 846, 1029
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	2 cut(s)	683, 1087
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	3 cut(s)	627, 633, 1092
TspGWI	ACGGA	2 cut(s)	343, 822
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	561
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	4 cut(s)	316, 337, 587, 877
XbaI	TCTAGA	1 cut(s)	1186
XceI	RCATGY	2 cut(s)	275, 1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	4 cut(s)	27, 80, 495, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.