Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

1559087 .. 1567666

Gene Structure 8580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G016600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGCATTTCACGTCGCTTGCCCAATTACATGCCGCCGAATCTGCGACTGTCCGCTAGGGTTTCCTCGCACTCTCGCCACCGACAATGCCAAGACCTTGTTCCTCCAAGACGTGCTTCGAGTCCACGACTTTCTCATCGATCCCACCGGAATTAGGGCTCGCGACGAAGGCAAAACAGTCCAGGTCGCCGTTCCGAGAGTTGCGCCGCCGCCTCCTCCTCCTCAGCCGGTTCTCCCATCGATCGTCGGTGATGTTGCCGTTGTTGTTGATGATGAGTCGGCGGCCGCGGCCTCCGCGCAGGCCAAGAGGGCCGCGCTCCAGCGCAAGGCTGCCGCGGATATGGTCGCCGCGGAGGACTTCGTTCGGCGATTCGAGTCCGGTTATTTGTCGGATACCTCAAGAGGCGTTGTGCGAGAAGAACAGGCTCAGTCCAATGTCAATGTTATGTGCCGGATATGTTTTTGTGGTGAAAACGAAGGAAGTGAGAGAGCAAGAAGGATGCTTCCATGCAAAACCTGTGGCAAGAAGTACCACAGGAACTGCATAAAAGTCTGGTCTCAACACAGAGATCTATTTCACTGGAGTTCATGGACGTGCCCCTTGTGCCGAATTTGTGAGGTATGCCGAAGAACAGGAGATCCAAACAAGCTTATGTTCTGCAAGAGGTGTGATGGTGCTTACCATTGTTACTGTCAGCATCCTTCACACAAGAATGTTTCTCCTGGACCTTATGTGTGCCCAAAACATACACAGTGTCACAGCTGTGGGTCAAAAGTCCCAGGAAATGGCTTAAGTGTAAGGTGGTTTCTGGGATATACTTGCTGTGATGCGTGTGGAAGATTATTTGCAAAGGGGAATTATTGTCCGGTCTGCTTGAAGGTTTATAGAGATTCAGAATCAACACCGATGGTTTGCTGTGATATTTGCCAGCGCTGGGTGCATTGCCAATGTGATGGAATCAGTGACGAGAGATATCAGCAGTATCAGTTAGATGGAAATCTCCAGTACAAATGTGCCACGTGCCGTGGAGAGTGCTACCAGGTCAAGAATAATGAGGATGCTGTGAAAGAGCTTTGGAGGAGAAAAGACGCCGCTGATAAAGATTTAATTTATAGTTTGAGGGCTGCCGCTGGGCTGCCAACTCAAGAAGAAATATTTTCTATTTCACCCTATTCTGAGGATGAAGAAAATGGCCCTCAAATATTAAAGAATGAACTTGGGCGTCAATTAAAATTATCTGTCAAAGGGTTGGTTGATAAGTCACCAAAAAAGACCAAGGACAGCGGAAAGAAATCTTTAAATAAAGTGTCTGCTAAGAAAAAGGAACAGCAGGATTTCTTAATTGGTACAACCGAAGTGAACCAGAGTTTTGGTGGACATGATGATTCACAGTCATTTGGATCTAGCTTGGGCTATGACAAGAATGATGAGATGCAGTCCTACAAAAATGCAGAACCAGACGTATATTTTTCACCCGTCACTGGAATGGGCCACACCAAAGAGATTTGTTCTGTCAACGAGCCAGGTGTTTTGAAGCACAAGTTTGTTGATGAAGTGATGGTGAGTGATGAAGATCGGAGTTCCAAGGCCGTTCGTATCAAGGGTAAGTCTCATGGTCTTGATAGCGGAGAGGATACTGCAAAGCATGCTGGAAAGTCAAAGCCTGTGAAAGGGAAGAAGTTAGTTATAAATTTTGGTGCACGGAAGATAAATATAACTAAGTCTCCAAGGTCTGATGTTTCAACTGGTCAAAGAGAACAAGATGTGGTGACCTCGAATGGCAGTGAAGATGTGAGCCAGCAGAAGGCAAGTCGTATGGTGGATAGACATGATGGTTCTGCTAATATCGGTGATGCTAAAGACAGAAGCGATTATTCTGGCCATTTGAAAGGTTCAAAGGTTGCTGGAAGAGAAGGAAATTTTATAAAGTTGGGAAAAGTTAGGTCAGGAGCTTCTGATTCTATCCCTAAAGTTGCTAGAGGAGATAAGGTTGATGGATACGAAGACGTTCCTCCAGAGCCGGTACATGGTTCGTCTGGAAAAAGCATTGAAGGGGGCACGACTGCAGTTGTGCCTGTAGGTGAAGTCCCGACTATGAGAAATGAGAGGGTATACTCCCGCAAGCAATCACAAAGCAGGTCTAATATACGTAGTGAAAGCAATGATGATCCTGCTCAGACACCTGTTTCACATTCGCCGGCCAAGGATACAAAACCTTTATTGAAGTTTAAGCTTAAGAAACCTAATCTCGAAAATCAGAGTTCTTCCTACCAGGAGGAAGAAAAAAGTTACGTTAAGGGCCAACGGTCAAAAAGAAAGAGACCGTCACCTTTTATGGAGAAAACGTCATTTAGTGAGAATGATGATAAGACACAATCAGTTCAAGATAATCTAATGGATGAGATCATGGATGCTAATTGGATATTGAAAAAGTTGGGCAGAGATGCAATTGGAAAGCGAGTTGAAGTTCAGCAGCTATCTGACAATTCATGGCACAAGGGAGTGGTTACTGACATAATTGACGGCACATCAACGCTATCTGTTACTCAGGATGATGGCAAAGTCAAATCTCTGGAACTTGGGAAGCAAGGGGTTCGTTTTGTATCTCAAAAGCAGAAGAGGTCGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

878

Amino Acids

97.27

Weight (kDa)

8.9

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1688, 1925
Acc36I	ACCTGC	1 cut(s)	2127
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	2112
AccII	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
AclWI	GGATC	4 cut(s)	134, 632, 1408, 2162
AcoI	YGGCCR	3 cut(s)	282, 1879, 2199
AcsI	RAATTY	3 cut(s)	609, 1690, 1918
AcvI	CACGTG	1 cut(s)	1020
AcyI	GRCGYC	2 cut(s)	1089, 1222
AfaI	GTAC	4 cut(s)	530, 1007, 1348, 2025
AfeI	AGCGCT	1 cut(s)	932
AfiI	CCNNNNNNNGG	8 cut(s)	153, 325, 785, 934, 1481, 1670, 1804, 2027
AflII	CTTAAG	2 cut(s)	790, 2234
AjiI	CACGTC	3 cut(s)	13, 112, 594
AjnI	CCWGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 99, 115, 131
AleI	CACNNNNGTG	1 cut(s)	762
AloI	GAACNNNNNNTCC	2 cut(s)	622, 654
AluBI	AGCT	7 cut(s)	649, 762, 1072, 1407, 1952, 2233, 2476
AluI	AGCT	7 cut(s)	649, 762, 1072, 1407, 1952, 2233, 2476
Alw21I	GWGCWC	1 cut(s)	1702
Alw26I	GTCTC	4 cut(s)	561, 1614, 1728, 2314
Alw44I	GTGCAC	1 cut(s)	1698
AlwI	GGATC	4 cut(s)	134, 632, 1408, 2162
AlwNI	CAGNNNCTG	1 cut(s)	540
Aor51HI	AGCGCT	1 cut(s)	932
ApaLI	GTGCAC	1 cut(s)	1698
ApeKI	GCWGC	4 cut(s)	329, 1124, 1135, 2473
ApoI	RAATTY	3 cut(s)	609, 1690, 1918
Asp700I	GAANNNNTTC	1 cut(s)	2007
AspLEI	GCGC	5 cut(s)	205, 298, 316, 324, 933
AspS9I	GGNCC	5 cut(s)	309, 725, 1193, 1489, 2299
AvaII	GGWCC	1 cut(s)	725
BaeGI	GKGCMC	4 cut(s)	599, 740, 1702, 2060
BalI	TGGCCA	1 cut(s)	1881
BanII	GRGCYC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	1020
BbsI	GAAGAC	1 cut(s)	2010
Bbv12I	GWGCWC	1 cut(s)	1702
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	316, 1111, 1122, 2485
BccI	CCATC	9 cut(s)	244, 665, 901, 947, 986, 1552, 1826, 1988, 2549
BceAI	ACGGC	5 cut(s)	173, 242, 1008, 1574, 2539
BcgI	CGANNNNNNTGC	2 cut(s)	2576, 2610
BciT130I	CCWGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
BciVI	GTATCC	4 cut(s)	385, 1627, 1991, 2200
BcoDI	GTCTC	4 cut(s)	561, 1614, 1728, 2314
BfaI	CTAG	3 cut(s)	56, 1404, 1977
BfmI	CTRYAG	2 cut(s)	2064, 2076
BfoI	RGCGCY	1 cut(s)	934
BfrI	CTTAAG	2 cut(s)	790, 2234
BfuAI	ACCTGC	1 cut(s)	2127
BfuI	GTATCC	4 cut(s)	385, 1627, 1991, 2200
BglI	GCCNNNNNGGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	568
Bme1390I	CCNGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
Bme18I	GGWCC	1 cut(s)	725
BmgBI	CACGTC	3 cut(s)	13, 112, 594
BmgT120I	GGNCC	5 cut(s)	309, 725, 1193, 1489, 2299
BmrFI	CCNGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
BmsI	GCATC	8 cut(s)	489, 706, 817, 1048, 1422, 1843, 2401, 2434
BpiI	GAAGAC	1 cut(s)	2010
BpmI	CTGGAG	4 cut(s)	302, 601, 986, 1998
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	382, 1128
Bsa29I	ATCGAT	2 cut(s)	138, 239
BsaAI	YACGTR	2 cut(s)	1020, 2150
BsaBI	GATNNNNATC	2 cut(s)	996, 1572
BsaHI	GRCGYC	2 cut(s)	1089, 1222
BsaI	GGTCTC	2 cut(s)	561, 2314
BsaJI	CCNNGG	9 cut(s)	285, 333, 348, 778, 1024, 1275, 1584, 1727, 2202
BsaWI	WCCGGW	3 cut(s)	146, 377, 865
BsaXI	ACNNNNNCTCC	6 cut(s)	1708, 1738, 1974, 2004, 2330, 2360
Bsc4I	CCNNNNNNNGG	8 cut(s)	153, 325, 785, 934, 1481, 1670, 1804, 2027
Bse118I	RCCGGY	3 cut(s)	226, 2020, 2197
Bse1I	ACTGG	4 cut(s)	584, 1003, 1486, 1750
Bse3DI	GCAATG	2 cut(s)	940, 2167
Bse8I	GATNNNNATC	2 cut(s)	996, 1572
BseBI	CCWGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
BseCI	ATCGAT	2 cut(s)	138, 239
BseDI	CCNNGG	9 cut(s)	285, 333, 348, 778, 1024, 1275, 1584, 1727, 2202
BseGI	GGATG	7 cut(s)	504, 697, 1063, 1186, 2404, 2416, 2557
BseJI	GATNNNNATC	2 cut(s)	996, 1572
BseLI	CCNNNNNNNGG	8 cut(s)	153, 325, 785, 934, 1481, 1670, 1804, 2027
BseMI	GCAATG	2 cut(s)	940, 2167
BseMII	CTCAG	5 cut(s)	236, 440, 1167, 2189, 2561
BseNI	ACTGG	4 cut(s)	584, 1003, 1486, 1750
BseRI	GAGGAG	5 cut(s)	204, 207, 210, 1093, 1995
BseSI	GKGCMC	4 cut(s)	599, 740, 1702, 2060
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	316, 1111, 1122, 2485
BseYI	CCCAGC	2 cut(s)	933, 1130
Bsh1236I	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
Bsh1285I	CGRYCG	2 cut(s)	243, 285
BshVI	ATCGAT	2 cut(s)	138, 239
BsiEI	CGRYCG	2 cut(s)	243, 285
BsiHKAI	GWGCWC	1 cut(s)	1702
BsiSI	CCGG	7 cut(s)	147, 227, 378, 451, 866, 2021, 2198
BslFI	GGGAC	2 cut(s)	761, 2072
BslI	CCNNNNNNNGG	8 cut(s)	153, 325, 785, 934, 1481, 1670, 1804, 2027
BsmAI	GTCTC	4 cut(s)	561, 1614, 1728, 2314
BsmFI	GGGAC	2 cut(s)	761, 2072
Bso31I	GGTCTC	2 cut(s)	561, 2314
Bsp1286I	GDGCHC	5 cut(s)	160, 599, 740, 1702, 2060
Bsp143I	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
Bsp68I	TCGCGA	1 cut(s)	162
BspCNI	CTCAG	5 cut(s)	235, 439, 1168, 2188, 2560
BspDI	ATCGAT	2 cut(s)	138, 239
BspFNI	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
BspMAI	CTGCAG	1 cut(s)	2068
BspMI	ACCTGC	1 cut(s)	2127
BspPI	GGATC	4 cut(s)	134, 632, 1408, 2162
BspTI	CTTAAG	2 cut(s)	790, 2234
BspTNI	GGTCTC	2 cut(s)	561, 2314
BsrDI	GCAATG	2 cut(s)	940, 2167
BsrFI	RCCGGY	3 cut(s)	226, 2020, 2197
BsrI	ACTGG	4 cut(s)	584, 1003, 1486, 1750
BssAI	RCCGGY	3 cut(s)	226, 2020, 2197
BssECI	CCNNGG	9 cut(s)	285, 333, 348, 778, 1024, 1275, 1584, 1727, 2202
BssMI	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
BssNAI	GTATAC	1 cut(s)	2113
BssNI	GRCGYC	2 cut(s)	1089, 1222
BssT1I	CCWWGG	4 cut(s)	1275, 1584, 1727, 2202
Bst1107I	GTATAC	1 cut(s)	2113
Bst2UI	CCWGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
Bst4CI	ACNGT	7 cut(s)	50, 178, 692, 753, 1392, 2307, 2325
Bst6I	CTCTTC	2 cut(s)	1903, 2612
BstACI	GRCGYC	2 cut(s)	1089, 1222
BstAFI	CTTAAG	2 cut(s)	790, 2234
BstAPI	GCANNNNNTGC	1 cut(s)	1646
BstBAI	YACGTR	2 cut(s)	1020, 2150
BstC8I	GCNNGC	8 cut(s)	19, 160, 300, 929, 1647, 1799, 2123, 2199
BstDEI	CTNAG	7 cut(s)	222, 426, 1176, 1314, 1719, 2175, 2547
BstDSI	CCRYGG	4 cut(s)	285, 333, 348, 1024
BstEII	GGTNACC	1 cut(s)	1768
BstENI	CCTNNNNNAGG	1 cut(s)	1668
BstF5I	GGATG	7 cut(s)	504, 697, 1063, 1186, 2404, 2416, 2557
BstFNI	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	5 cut(s)	205, 298, 316, 324, 933
BstKTI	GATC	8 cut(s)	142, 243, 571, 640, 1403, 1576, 2170, 2406
BstMAI	GTCTC	4 cut(s)	561, 1614, 1728, 2314
BstMBI	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
BstMCI	CGRYCG	2 cut(s)	243, 285
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 168, 287, 293, 308, 603, 937, 1646
BstNI	CCWGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
BstNSI	RCATGY	2 cut(s)	33, 1649
BstPI	GGTNACC	1 cut(s)	1768
BstSCI	CCNGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
BstSFI	CTRYAG	2 cut(s)	2064, 2076
BstSLI	GKGCMC	4 cut(s)	599, 740, 1702, 2060
BstSNI	TACGTA	1 cut(s)	2150
BstUI	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
BstV1I	GCAGC	4 cut(s)	316, 1111, 1122, 2485
BstV2I	GAAGAC	1 cut(s)	2010
BstX2I	RGATCY	3 cut(s)	568, 637, 1400
BstXI	CCANNNNNNTGG	2 cut(s)	953, 1370
BstYI	RGATCY	3 cut(s)	568, 637, 1400
BstZ17I	GTATAC	1 cut(s)	2113
BstZI	CGGCCG	1 cut(s)	282
Bsu15I	ATCGAT	2 cut(s)	138, 239
BsuI	GTATCC	4 cut(s)	385, 1627, 1991, 2200
BsuTUI	ATCGAT	2 cut(s)	138, 239
BtgI	CCRYGG	4 cut(s)	285, 333, 348, 1024
BtrI	CACGTC	3 cut(s)	13, 112, 594
BtsCI	GGATG	7 cut(s)	504, 697, 1063, 1186, 2404, 2416, 2557
BtsI	GCAGTG	1 cut(s)	1789
BtsIMutI	CAGTG	5 cut(s)	577, 758, 967, 1479, 1789
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	2127
Cac8I	GCNNGC	8 cut(s)	19, 160, 300, 929, 1647, 1799, 2123, 2199
CaiI	CAGNNNCTG	1 cut(s)	540
CciNI	GCGGCCGC	1 cut(s)	282
CfoI	GCGC	5 cut(s)	205, 298, 316, 324, 933
Cfr10I	RCCGGY	3 cut(s)	226, 2020, 2197
Cfr13I	GGNCC	5 cut(s)	309, 725, 1193, 1489, 2299
Cfr42I	CCGCGG	3 cut(s)	288, 336, 351
ClaI	ATCGAT	2 cut(s)	138, 239
CseI	GACGC	2 cut(s)	1097, 1211
CsiI	ACCWGGT	1 cut(s)	1038
Csp6I	GTAC	4 cut(s)	529, 1006, 1347, 2024
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviQI	GTAC	4 cut(s)	529, 1006, 1347, 2024
DdeI	CTNAG	7 cut(s)	222, 426, 1176, 1314, 1719, 2175, 2547
DpnI	GATC	8 cut(s)	141, 242, 570, 639, 1402, 1575, 2169, 2405
DpnII	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
DraI	TTTAAA	1 cut(s)	1299
EaeI	YGGCCR	3 cut(s)	282, 1879, 2199
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	1903, 2612
EarI	CTCTTC	2 cut(s)	1903, 2612
EclXI	CGGCCG	1 cut(s)	282
Eco105I	TACGTA	1 cut(s)	2150
Eco130I	CCWWGG	4 cut(s)	1275, 1584, 1727, 2202
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	561, 2314
Eco32I	GATATC	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	725
Eco47III	AGCGCT	1 cut(s)	932
Eco52I	CGGCCG	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	1020
Eco91I	GGTNACC	1 cut(s)	1768
EcoNI	CCTNNNNNAGG	1 cut(s)	1668
EcoO65I	GGTNACC	1 cut(s)	1768
EcoRII	CCWGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
EcoRV	GATATC	1 cut(s)	974
EcoT14I	CCWWGG	4 cut(s)	1275, 1584, 1727, 2202
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	4 cut(s)	1275, 1584, 1727, 2202
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	2 cut(s)	761, 2072
FauI	CCCGC	1 cut(s)	2126
FblI	GTMKAC	1 cut(s)	2112
FokI	GGATG	7 cut(s)	511, 684, 1070, 1193, 2411, 2423, 2564
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	3 cut(s)	56, 1404, 1977
GlaI	GCGC	5 cut(s)	204, 297, 315, 323, 932
GsaI	CCCAGC	2 cut(s)	937, 1134
GsuI	CTGGAG	4 cut(s)	302, 601, 986, 1998
HaeII	RGCGCY	1 cut(s)	934
HapII	CCGG	7 cut(s)	147, 227, 378, 451, 866, 2021, 2198
HgaI	GACGC	2 cut(s)	1097, 1211
HhaI	GCGC	5 cut(s)	205, 298, 316, 324, 933
Hin1I	GRCGYC	2 cut(s)	1089, 1222
Hin6I	GCGC	5 cut(s)	203, 296, 314, 322, 931
HinP1I	GCGC	5 cut(s)	203, 296, 314, 322, 931
HincII	GTYRAC	1 cut(s)	1516
HindII	GTYRAC	1 cut(s)	1516
HindIII	AAGCTT	2 cut(s)	647, 2231
HpaII	CCGG	7 cut(s)	147, 227, 378, 451, 866, 2021, 2198
Hpy166II	GTNNAC	6 cut(s)	124, 1360, 1376, 1516, 1700, 2113
Hpy8I	GTNNAC	6 cut(s)	124, 1360, 1376, 1516, 1700, 2113
Hpy99I	CGWCG	3 cut(s)	17, 167, 248
HpyAV	CCTTC	8 cut(s)	161, 470, 489, 711, 871, 1798, 1907, 2045
HpyCH4III	ACNGT	7 cut(s)	50, 178, 692, 753, 1392, 2307, 2325
HpyCH4IV	ACGT	9 cut(s)	12, 111, 593, 1019, 1461, 2007, 2149, 2292, 2345
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 168, 287, 293, 308, 603, 937, 1646
HpyF3I	CTNAG	7 cut(s)	222, 426, 1176, 1314, 1719, 2175, 2547
HpySE526I	ACGT	9 cut(s)	12, 111, 593, 1019, 1461, 2007, 2149, 2292, 2345
Hsp92I	GRCGYC	2 cut(s)	1089, 1222
HspAI	GCGC	5 cut(s)	203, 296, 314, 322, 931
KroI	GCCGGC	1 cut(s)	2197
KroNI	GCCGGC	1 cut(s)	2199
KspI	CCGCGG	3 cut(s)	288, 336, 351
Kzo9I	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
LmnI	GCTCC	2 cut(s)	321, 1949
Lsp1109I	GCAGC	4 cut(s)	316, 1111, 1122, 2485
LweI	GCATC	8 cut(s)	489, 706, 817, 1048, 1422, 1843, 2401, 2434
MabI	ACCWGGT	1 cut(s)	1038
MaeI	CTAG	3 cut(s)	56, 1404, 1977
MaeII	ACGT	9 cut(s)	12, 111, 593, 1019, 1461, 2007, 2149, 2292, 2345
MalI	GATC	8 cut(s)	141, 242, 570, 639, 1402, 1575, 2169, 2405
MboI	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
MfeI	CAATTG	1 cut(s)	2448
MflI	RGATCY	3 cut(s)	568, 637, 1400
MhlI	GDGCHC	5 cut(s)	160, 599, 740, 1702, 2060
MlsI	TGGCCA	1 cut(s)	1881
MluNI	TGGCCA	1 cut(s)	1881
MlyI	GAGTC	3 cut(s)	129, 284, 383
MmeI	TCCRAC	1 cut(s)	369
Mox20I	TGGCCA	1 cut(s)	1881
MroNI	GCCGGC	1 cut(s)	2197
MroXI	GAANNNNTTC	1 cut(s)	2007
MscI	TGGCCA	1 cut(s)	1881
MseI	TTAA	9 cut(s)	791, 1106, 1205, 1229, 1298, 1340, 2229, 2235, 2295
MslI	CAYNNNNRTG	4 cut(s)	592, 711, 762, 1484
Msp20I	TGGCCA	1 cut(s)	1881
MspA1I	CMGCKG	7 cut(s)	287, 335, 350, 762, 1094, 1130, 1284
MspCI	CTTAAG	2 cut(s)	790, 2234
MspI	CCGG	7 cut(s)	147, 227, 378, 451, 866, 2021, 2198
MspR9I	CCNGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
MunI	CAATTG	1 cut(s)	2448
MvaI	CCWGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
MvnI	CGCG	6 cut(s)	162, 287, 296, 314, 335, 350
MwoI	GCNNNNNNNGC	8 cut(s)	42, 168, 287, 293, 308, 603, 937, 1646
NaeI	GCCGGC	1 cut(s)	2199
NdeII	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
NgoMIV	GCCGGC	1 cut(s)	2197
NmuCI	GTSAC	6 cut(s)	755, 962, 1260, 1477, 1768, 2325
NotI	GCGGCCGC	1 cut(s)	282
NruI	TCGCGA	1 cut(s)	162
NspI	RCATGY	2 cut(s)	33, 1649
OliI	CACNNNNGTG	1 cut(s)	762
PaeI	GCATGC	1 cut(s)	1649
PdiI	GCCGGC	1 cut(s)	2199
PdmI	GAANNNNTTC	1 cut(s)	2007
PfeI	GAWTC	7 cut(s)	39, 369, 890, 896, 957, 1385, 1958
PflMI	CCANNNNNTGG	1 cut(s)	785
PfoI	TCCNGGA	1 cut(s)	721
Ple19I	CGATCG	1 cut(s)	243
PleI	GAGTC	3 cut(s)	128, 283, 382
PmaCI	CACGTG	1 cut(s)	1020
PmlI	CACGTG	1 cut(s)	1020
PpsI	GAGTC	3 cut(s)	128, 283, 382
Ppu21I	YACGTR	2 cut(s)	1020, 2150
PsiI	TTATAA	2 cut(s)	1688, 1925
Psp6I	CCWGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
PspCI	CACGTG	1 cut(s)	1020
PspEI	GGTNACC	1 cut(s)	1768
PspFI	CCCAGC	2 cut(s)	933, 1130
PspGI	CCWGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
PspPI	GGNCC	5 cut(s)	309, 725, 1193, 1489, 2299
PstI	CTGCAG	1 cut(s)	2068
PstNI	CAGNNNCTG	1 cut(s)	540
PsuI	RGATCY	3 cut(s)	568, 637, 1400
PvuI	CGATCG	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	762
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	4 cut(s)	530, 1007, 1348, 2025
RsaNI	GTAC	4 cut(s)	529, 1006, 1347, 2024
RseI	CAYNNNNRTG	4 cut(s)	592, 711, 762, 1484
SacII	CCGCGG	3 cut(s)	288, 336, 351
SaqAI	TTAA	9 cut(s)	791, 1106, 1205, 1229, 1298, 1340, 2229, 2235, 2295
Sau3AI	GATC	8 cut(s)	139, 240, 568, 637, 1400, 1573, 2167, 2403
Sau96I	GGNCC	5 cut(s)	309, 725, 1193, 1489, 2299
SchI	GAGTC	3 cut(s)	129, 284, 383
ScrFI	CCNGG	6 cut(s)	182, 723, 780, 1040, 1524, 2273
SduI	GDGCHC	5 cut(s)	160, 599, 740, 1702, 2060
SexAI	ACCWGGT	1 cut(s)	1038
SfaNI	GCATC	8 cut(s)	489, 706, 817, 1048, 1422, 1843, 2401, 2434
SfcI	CTRYAG	2 cut(s)	2064, 2076
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
Sfr303I	CCGCGG	3 cut(s)	288, 336, 351
SgrBI	CCGCGG	3 cut(s)	288, 336, 351
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	4 cut(s)	592, 711, 762, 1484
SmlI	CTYRAG	4 cut(s)	397, 790, 1143, 2234
SmoI	CTYRAG	4 cut(s)	397, 790, 1143, 2234
SnaBI	TACGTA	1 cut(s)	2150
SphI	GCATGC	1 cut(s)	1649
SspI	AATATT	2 cut(s)	1155, 1203
SspMI	CTAG	3 cut(s)	56, 1404, 1977
StyD4I	CCNGG	6 cut(s)	180, 721, 778, 1038, 1522, 2271
StyI	CCWWGG	4 cut(s)	1275, 1584, 1727, 2202
TaaI	ACNGT	7 cut(s)	50, 178, 692, 753, 1392, 2307, 2325
TaiI	ACGT	9 cut(s)	15, 114, 596, 1022, 1464, 2010, 2152, 2295, 2348
TaqI	TCGA	7 cut(s)	118, 138, 239, 372, 1775, 2250, 2624
TatI	WGTACW	1 cut(s)	1005
TfiI	GAWTC	7 cut(s)	39, 369, 890, 896, 957, 1385, 1958
Tru1I	TTAA	9 cut(s)	791, 1106, 1205, 1229, 1298, 1340, 2229, 2235, 2295
Tru9I	TTAA	9 cut(s)	791, 1106, 1205, 1229, 1298, 1340, 2229, 2235, 2295
TscAI	CASTG	5 cut(s)	584, 758, 967, 1486, 1789
TseFI	GTSAC	6 cut(s)	755, 962, 1260, 1477, 1768, 2325
TseI	GCWGC	4 cut(s)	329, 1124, 1135, 2473
Tsp45I	GTSAC	6 cut(s)	755, 962, 1260, 1477, 1768, 2325
TspDTI	ATGAA	6 cut(s)	576, 1197, 1227, 1566, 1584, 2478
TspGWI	ACGGA	1 cut(s)	1717
TspRI	CASTG	5 cut(s)	584, 758, 967, 1486, 1789
Van91I	CCANNNNNTGG	1 cut(s)	785
Vha464I	CTTAAG	2 cut(s)	790, 2234
VneI	GTGCAC	1 cut(s)	1698
VpaK11BI	GGWCC	1 cut(s)	725
XagI	CCTNNNNNAGG	1 cut(s)	1668
XapI	RAATTY	3 cut(s)	609, 1690, 1918
XceI	RCATGY	2 cut(s)	33, 1649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1370
XmiI	GTMKAC	1 cut(s)	2112
XmnI	GAANNNNTTC	1 cut(s)	2007
XspI	CTAG	3 cut(s)	56, 1404, 1977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.