Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2858938 .. 2860134

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAATCTCCAGTACAAATGTGCCACATGTCGTGGAGAGTGCCACCAGGTCAAGAATCATGAGGATGCTGCGAAAGAGCTTTGGAAGCGAAAAGACGAAAGCTGAACGAGATTTAATTACTAGCTTAAGGGCTGCTGCAGGGTTGCCAGCTCCTGAAGAAATATTTTCTATTCCTCCCTATTCTGATGATGAAGAAAATGGCCCTCCAATACAAAAGAGTGAATATGGACGTCCCTTGAAATTGTCTCTCAAAGGATTAGTTGATAAGTCGCCAAAAAAGACCAAGGACAGTGGAAAGAAATCTTTAATCAGAATCCCTGCTAAGAAGAAGGAATACCAGGAAATTTCAATCAGTAATACCGAAGCAAATCAGAGTGTTCGAGGACATGATCACCAATACCTTGGGTCGGACAAGAATGATGAGATGCATTCCTCTAAAATGCAGAACCAGAAGTATATTCTTCACTCTTGCTGGAAGTGTGAGCCTACTGAAGAGATTTTCTCTGTCAGTGAGCCAAGCGTATTGAAGCACAAGTTTGTTGATGAAGTGATGTTAAATGGTGGAGATAGGACCTCCAAAGTTCGTATTAAGGGCAAGTCTCATGGTCTGGATAGTGTAGAGGACACTGGGAAGCATGCTGGCAAGTCTAAGCCTGTGAAAGAGAAGAAGAAGCTAGTGATAAACTTTGGTGCAAAAAAGTTAAATATAACTAAATCTCCAAGTTCTGCTGCTTCAACCTATCAAAGAGAACATGCTTCGGTGACCTCCAATGGTGGTGAAGATGCGAGCCAGAGGACACAACAAGTACTATGGTGGAAAAATAGACATGATGGTCCTGCTAATTTTGGCGATGCTAAAGGTATAAAAGTTTTGCACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

294

Amino Acids

32.77

Weight (kDa)

9.6

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	834
AatII	GACGTC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	177, 513
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	2 cut(s)	16, 810
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	241, 351, 529, 738
AjnI	CCWGG	2 cut(s)	47, 339
AluBI	AGCT	5 cut(s)	81, 104, 126, 152, 676
AluI	AGCT	5 cut(s)	81, 104, 126, 152, 676
Alw26I	GTCTC	2 cut(s)	252, 606
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	70, 134, 137, 731
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	203, 573, 836
AsuHPI	GGTGA	3 cut(s)	386, 775, 791
AvaII	GGWCC	2 cut(s)	573, 836
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbvI	GCAGC	4 cut(s)	57, 121, 124, 718
BccI	CCATC	1 cut(s)	827
BciT130I	CCWGG	2 cut(s)	49, 341
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	252, 606
BfaI	CTAG	2 cut(s)	123, 677
BfmI	CTRYAG	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	127
BisI	GCNGC	4 cut(s)	71, 135, 138, 732
BlsI	GCNGC	4 cut(s)	72, 136, 139, 733
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	49, 341
Bme18I	GGWCC	2 cut(s)	573, 836
BmgT120I	GGNCC	3 cut(s)	203, 573, 836
BmrFI	CCNGG	2 cut(s)	49, 341
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	4 cut(s)	57, 417, 775, 844
BmuI	ACTGGG	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BsaHI	GRCGYC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	285, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	12, 634
BseBI	CCWGG	2 cut(s)	49, 341
BseDI	CCNNGG	2 cut(s)	285, 403
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	12, 634
BseXI	GCAGC	4 cut(s)	57, 121, 124, 718
BshFI	GGCC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	252, 606
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	12, 634
BssECI	CCNNGG	2 cut(s)	285, 403
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	285, 403
Bst2UI	CCWGG	2 cut(s)	49, 341
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	127
BstC8I	GCNNGC	4 cut(s)	150, 639, 643, 790
BstDEI	CTNAG	2 cut(s)	324, 651
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	252, 606
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	2 cut(s)	49, 341
BstNSI	RCATGY	3 cut(s)	32, 641, 758
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	2 cut(s)	47, 339
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	57, 121, 124, 718
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	867
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	298, 517, 627
Cac8I	GCNNGC	4 cut(s)	150, 639, 643, 790
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	203, 573, 836
CsiI	ACCWGGT	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	15, 809
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	7 cut(s)	29, 61, 389, 605, 638, 755, 830
CviQI	GTAC	2 cut(s)	15, 809
DdeI	CTNAG	2 cut(s)	324, 651
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DrdI	GACNNNNNNGTC	1 cut(s)	834
DseDI	GACNNNNNNGTC	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	285, 403
Eco47I	GGWCC	2 cut(s)	573, 836
Eco57I	CTGAAG	2 cut(s)	177, 513
Eco91I	GGTNACC	1 cut(s)	763
EcoO109I	RGGNCCY	1 cut(s)	573
EcoO65I	GGTNACC	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	47, 339
EcoT14I	CCWWGG	2 cut(s)	285, 403
EcoT22I	ATGCAT	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	285, 403
FaeI	CATG	7 cut(s)	32, 64, 392, 608, 641, 758, 833
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	7 cut(s)	28, 60, 388, 604, 637, 754, 829
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	71, 135, 138, 732
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	71, 135, 138, 732
FspBI	CTAG	2 cut(s)	123, 677
GluI	GCNGC	4 cut(s)	71, 135, 138, 732
HaeIII	GGCC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	7 cut(s)	32, 64, 392, 608, 641, 758, 833
HinfI	GANTC	2 cut(s)	57, 315
HphI	GGTGA	3 cut(s)	386, 775, 791
Hpy188I	TCNGA	4 cut(s)	187, 314, 375, 412
Hpy188III	TCNNGA	4 cut(s)	54, 61, 155, 611
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	140, 430, 445, 695, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	324, 651
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	7 cut(s)	32, 64, 392, 608, 641, 758, 833
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	57, 121, 124, 718
LweI	GCATC	4 cut(s)	57, 417, 775, 844
MabI	ACCWGGT	1 cut(s)	47
MaeI	CTAG	2 cut(s)	123, 677
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	8 cut(s)	170, 206, 340, 455, 506, 679, 682, 794
MluCI	AATT	4 cut(s)	117, 242, 345, 844
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	57, 186, 216, 377, 445, 586, 616, 778, 789
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	6 cut(s)	116, 128, 308, 557, 591, 704
MslI	CAYNNNNRTG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	49, 341
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	49, 341
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	32, 64, 392, 608, 641, 758, 833
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	3 cut(s)	32, 641, 758
PaeI	GCATGC	1 cut(s)	641
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	57, 315
PkrI	GCNGC	4 cut(s)	72, 136, 139, 733
PpuMI	RGGWCCY	1 cut(s)	573
PscI	ACATGT	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	47, 339
PspEI	GGTNACC	1 cut(s)	763
PspGI	CCWGG	2 cut(s)	47, 339
PspPI	GGNCC	3 cut(s)	203, 573, 836
PspPPI	RGGWCCY	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	16, 810
RsaNI	GTAC	2 cut(s)	15, 809
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	6 cut(s)	116, 128, 308, 557, 591, 704
SatI	GCNGC	4 cut(s)	71, 135, 138, 732
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	203, 573, 836
ScaI	AGTACT	1 cut(s)	810
ScrFI	CCNGG	2 cut(s)	49, 341
SexAI	ACCWGGT	1 cut(s)	47
SfaNI	GCATC	4 cut(s)	57, 417, 775, 844
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	573, 836
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	4 cut(s)	117, 242, 345, 844
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	2 cut(s)	123, 677
StyD4I	CCNGG	2 cut(s)	47, 339
StyI	CCWWGG	2 cut(s)	285, 403
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	117, 242, 345, 844
TatI	WGTACW	2 cut(s)	14, 808
TfiI	GAWTC	2 cut(s)	57, 315
Tru1I	TTAA	6 cut(s)	116, 128, 308, 557, 591, 704
Tru9I	TTAA	6 cut(s)	116, 128, 308, 557, 591, 704
TscAI	CASTG	3 cut(s)	298, 517, 634
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	70, 134, 137, 731
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	2 cut(s)	207, 561
TspRI	CASTG	3 cut(s)	298, 517, 634
Vha464I	CTTAAG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	573, 836
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	3 cut(s)	32, 641, 758
XspI	CTAG	2 cut(s)	123, 677
ZraI	GACGTC	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	810
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.