Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Reverse (-)

1151245 .. 1169000

Gene Structure 17756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1013100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCATTTCATGTCGCCTGCCCAATTACTTGCCGGCGAATCTGCGACTGTGCGTTAGGGTTTCCGCGAACCCTCGCCACCGGCAATGCCAAGGCCTCGTTCCTCGAAGACGTGCTTCGAGTTCACGACTTTCTCATCGATCCCTCCGGAATTAGGGCTCGCGATGATGGCAAAACGGTCCAGGTCGCCGTTCCGAAGGTCGCCCCGCCGCCGCCGCCGCTTCCCCAGCCGGTTATGTCTTCTGCCGTCGGAGATAGTTACGCCGCTGCCGTTGTTGACGATGAGTCCGCCGCCGCCGCCTCCTCCCAGGCCAAGCGTGCCGCGCTCCAGCGCAAGGCTGCTGCGGATATGGTGGCGGCTGAGGACTTTGCTCGGCGATTCGAGTCTGGTTATTTGTCGGACACCTCAAGAGGTGGTGTGGGTGAAGAGCAGGCTCAGTCCAATGTGAATGTTATGTGCCGGATATGCTTTTGTGGTGAAAATGAAGGAAGTGAGAGAGCAAGAAAAATGCTTCCATGCAAAACTTGTGGCAAGAAGTACCACAGGAACTGCGTAAAAGTTTGGTCTAAACACAGAGATCTATTTCATTGGAGTTCATGGACGTGCCCCCTGTGCCGAATTTGTGAGGTATGCCGAAGAACTGGAGATCCAAATAAGCTTATGTTCTGCAAAAGGTGTGATGGCGCCTACCATTGTTACTGCCAACATCCTTCACACAAGAATGTTTCTCCTGGACCTTATGTGTGCCCGAAACATACACAGTGTCACAGCTGCGGGTCAAAAGTCCCCGGAAATGGCTTGAGCGTGAGATGGTTTCTGGGATACACTTGTTGTGATGCGTGTGGAAGATTATTTGTGAAGGGGAACTATTGTCCTGTGTGCTTGAAGGTTTATAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATCTTTGCCAGCGCTGGGTGCATTGTCATTGTGATGGAATCAGTGATGAGAGATATCAGCTGTATCAGTTAGATGGAAATCTTGAGTACAAATGTGCTACATGTCGTGGAGAATGCTACCAGGTCAAGAATAATGAGGATGCTGTGGTAGAGCTTTGGAGGAGAAAAGACGAAGCGGAGCAAGATTTAATTTTTAGCTTGAGGGTTGCTGCAGGGTTGCCAACTCAAGAAGAAATATTTTCTATTTCACCCTATTCCGATGATGAAGAAAACAGCCCTCAATTATTAAAGAATGAGTATGGGCGTCCGTTGAAATTATCTCTCAAGGGGTTAGTTGATAAGTCACAAAAAAAGACCAAGGACAGTGGGAAAAAATCTTCAAATAAAGTGTCTGCTAAGAAAAAGGAATACCAGGAGTTCTTTGTTGGTAAAACTGAAGTGATTCAGAGGTCTGGAGGACATGATGATCCTCAGTCCTTCGGATCTAGCTTGGGCTATGACAAGAATGATGAGATGCAGCCCTACAAAAATGCAGAATTAGACTTATATTCTTCGCCTATAGCTGGAAGTATTAGCCACACCGAAGAGATGTGCTCCGTCAATAAGCCAGGTATTTTGAAGCACAAGTTTGTTGATGAGGTGATGGCAAGTGATGAAGATAGGGCTTCCAAAGTCGTTCATATCAAGGGTAAGTCTCATGGTCTGGATAGTGGAGAGGATACTGGAAAGCATGCTGGCAAATCAAAGCCTGTTAAAGGGAAGAAGTTAGTGATAAATTTTGGTGCACGGAAGATAAATTTGCCCAAGTCTCCAATATCTGATGCTTCAACCTGTCAAAGAGAGCAAGATTTGTTGACTTCCAATGCCGGTGAAGATGCCAGCCAGCAGAGAGCACCTGTTATGGTGGATAGACATGATGGTTCGGTTAATGCTAAAGATAAAAGTGATTATTCTAGCCCTTTGAAAGTTCCAAAGGTTTCTGGGAGAGAAGGAAACTTTATAAAGTTGGGAAAAGTTAGGTCTGGAGCTTCTGATCATAACCCCAAATTTGCAAGAGGGGATAAGGCTGATGAATATGAAGCCATTCAACCTGAGCAGACACCTGTTTCGTTTGGAAAAGGCATTGAAGGAGGCACGACTGCAGCTGTGCCTGTAGGTGAAGTCCCGACTTTAAGAAATGACAGGGTATATTCCCGGAAGCATTCACATAGCAGGTCTAATATACGTACTGAAACCAATGATTCTTACGCTCAGACACCCGTGTCACATTCTTCGTCAAAAGATGCCAAACCTCCGTCATTGAAGTTTAAGCTCAAGAAGCCTAATATTGAAAATCAGAATTCTTCTCATCATGAGGAAGAAAAAAGTTACGTCAAGGGCCAGCGGTCAAAAAGAAAGAGAGCATCACCGTTTATGGAGAAGACATCATTTGGTGAGAATGATGACAAGACACAATCAGTTCAGGATAATGTAATGGATGAGATGGATGTTAACTGGATATTGAAAAAATTGGGCAGAGATGCAATTGGAAAGCGAGTTGAAGTTCAGCAGCTATCTGACAATTCATGGCATAAGGGAGTGGTTAGCGATGTTATTGAAGGCATGTCAACATTATCTGTTACTTTAGATGATGGCAAAGTCAAATCTCTGGAACTCGGGAAGCAAGGGGTTCGATTTGTATCTCAAAAGCATAAGAGGCCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

879

Amino Acids

97.31

Weight (kDa)

8.79

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	208 - 251	8.4e-06	PHD-finger
PHDvar_NSD	PF23004	208 - 253	7.4e-06	Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1928
AasI	GACNNNNNNGTC	1 cut(s)	2188
Acc36I	ACCTGC	1 cut(s)	2130
AccB1I	GGYRCC	1 cut(s)	683
AccII	CGCG	3 cut(s)	67, 162, 323
AccIII	TCCGGA	1 cut(s)	146
AclWI	GGATC	4 cut(s)	134, 641, 1388, 1417
AcsI	RAATTY	5 cut(s)	618, 1702, 1723, 1973, 2266
AcuI	CTGAAG	1 cut(s)	1383
AcyI	GRCGYC	2 cut(s)	684, 1231
AfaI	GTAC	3 cut(s)	539, 1016, 2155
AfeI	AGCGCT	1 cut(s)	941
AfiI	CCNNNNNNNGG	6 cut(s)	153, 334, 794, 943, 1490, 1682
AflIII	ACRYGT	1 cut(s)	1028
AhdI	GACNNNNNGTC	1 cut(s)	283
AjiI	CACGTC	2 cut(s)	112, 603
AjnI	CCWGG	6 cut(s)	180, 306, 730, 1047, 1338, 1534
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
Alw21I	GWGCWC	3 cut(s)	1523, 1714, 1822
Alw26I	GTCTC	2 cut(s)	1626, 1740
Alw44I	GTGCAC	1 cut(s)	1710
AlwI	GGATC	4 cut(s)	134, 641, 1388, 1417
AlwNI	CAGNNNCTG	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	2582
Aor13HI	TCCGGA	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	941
AoxI	GGCC	4 cut(s)	93, 309, 2305, 2624
ApaLI	GTGCAC	1 cut(s)	1710
ApeKI	GCWGC	8 cut(s)	266, 338, 341, 771, 1136, 1444, 2069, 2476
ApoI	RAATTY	5 cut(s)	618, 1702, 1723, 1973, 2266
ArsI	GACNNNNNNTTYG	4 cut(s)	1301, 1333, 2017, 2049
Asp700I	GAANNNNTTC	2 cut(s)	1368, 2010
AspLEI	GCGC	4 cut(s)	325, 333, 686, 942
AspS9I	GGNCC	3 cut(s)	178, 734, 2305
AsuC2I	CCSGG	2 cut(s)	789, 2122
AsuHPI	GGTGA	8 cut(s)	434, 488, 1167, 1579, 1808, 2096, 2325, 2372
AvaI	CYCGRG	1 cut(s)	2582
AvaII	GGWCC	2 cut(s)	178, 734
BaeGI	GKGCMC	3 cut(s)	608, 749, 1714
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	3 cut(s)	114, 231, 2354
Bbv12I	GWGCWC	3 cut(s)	1523, 1714, 1822
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	8 cut(s)	253, 325, 328, 758, 1123, 1456, 2081, 2488
BccI	CCATC	9 cut(s)	161, 674, 804, 956, 995, 1564, 1838, 2404, 2552
BceAI	ACGGC	3 cut(s)	173, 230, 254
BcgI	CGANNNNNNTGC	2 cut(s)	2579, 2613
BciT130I	CCWGG	6 cut(s)	182, 308, 732, 1049, 1340, 1536
BciVI	GTATCC	2 cut(s)	815, 1639
BclI	TGATCA	1 cut(s)	1960
BcnI	CCSGG	2 cut(s)	789, 2122
BcoDI	GTCTC	2 cut(s)	1626, 1740
BfaI	CTAG	2 cut(s)	1413, 1881
BfmI	CTRYAG	4 cut(s)	1137, 1485, 2067, 2079
BfoI	RGCGCY	2 cut(s)	687, 943
BfuAI	ACCTGC	1 cut(s)	2130
BfuI	GTATCC	2 cut(s)	815, 1639
BglII	AGATCT	1 cut(s)	577
Bme1390I	CCNGG	8 cut(s)	182, 308, 732, 789, 1049, 1340, 1536, 2122
Bme18I	GGWCC	2 cut(s)	178, 734
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	2582
BmgBI	CACGTC	2 cut(s)	112, 603
BmgT120I	GGNCC	3 cut(s)	178, 734, 2305
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	8 cut(s)	182, 308, 732, 789, 1049, 1340, 1536, 2122
BmsI	GCATC	8 cut(s)	826, 1057, 1431, 1738, 1792, 2200, 2339, 2437
BpiI	GAAGAC	3 cut(s)	114, 231, 2354
BplI	GAGNNNNNCTC	2 cut(s)	1505, 1537
BpmI	CTGGAG	4 cut(s)	311, 663, 1401, 1971
Bpu10I	CCTNAGC	2 cut(s)	360, 2019
BpuEI	CTTGAG	7 cut(s)	391, 820, 1031, 1137, 1147, 1235, 2225
BpuMI	CCSGG	2 cut(s)	789, 2122
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	2153
BsaBI	GATNNNNATC	2 cut(s)	1005, 2605
BsaHI	GRCGYC	2 cut(s)	684, 1231
BsaJI	CCNNGG	4 cut(s)	90, 306, 787, 1284
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 334, 794, 943, 1490, 1682
Bse118I	RCCGGY	4 cut(s)	33, 80, 229, 1793
Bse1I	ACTGG	3 cut(s)	646, 1654, 2426
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	2 cut(s)	1005, 2605
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	6 cut(s)	182, 308, 732, 1049, 1340, 1536
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	90, 306, 787, 1284
BseGI	GGATG	4 cut(s)	706, 1072, 2410, 2419
BseJI	GATNNNNATC	2 cut(s)	1005, 2605
BseLI	CCNNNNNNNGG	6 cut(s)	153, 334, 794, 943, 1490, 1682
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	5 cut(s)	351, 449, 1412, 2010, 2192
BseNI	ACTGG	3 cut(s)	646, 1654, 2426
BseRI	GAGGAG	2 cut(s)	292, 1102
BseSI	GKGCMC	3 cut(s)	608, 749, 1714
BseXI	GCAGC	8 cut(s)	253, 325, 328, 758, 1123, 1456, 2081, 2488
BseYI	CCCAGC	2 cut(s)	225, 942
Bsh1236I	CGCG	3 cut(s)	67, 162, 323
BshFI	GGCC	4 cut(s)	95, 311, 2307, 2626
BshNI	GGYRCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	3 cut(s)	1523, 1714, 1822
BsiHKCI	CYCGRG	1 cut(s)	2582
BsiSI	CCGG	8 cut(s)	34, 81, 147, 230, 460, 789, 1794, 2122
BslFI	GGGAC	2 cut(s)	770, 2075
BslI	CCNNNNNNNGG	6 cut(s)	153, 334, 794, 943, 1490, 1682
BsmAI	GTCTC	2 cut(s)	1626, 1740
BsmFI	GGGAC	2 cut(s)	770, 2075
BsmI	GAATGC	2 cut(s)	1046, 2128
BsnI	GGCC	4 cut(s)	95, 311, 2307, 2626
BsoBI	CYCGRG	1 cut(s)	2582
Bsp1286I	GDGCHC	6 cut(s)	160, 608, 749, 1523, 1714, 1822
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	4 cut(s)	95, 311, 2307, 2626
BspCNI	CTCAG	5 cut(s)	352, 448, 1411, 2011, 2191
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	3 cut(s)	67, 162, 323
BspHI	TCATGA	1 cut(s)	2278
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	2 cut(s)	1141, 2071
BspMI	ACCTGC	1 cut(s)	2130
BspPI	GGATC	4 cut(s)	134, 641, 1388, 1417
BspQI	GCTCTTC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	4 cut(s)	33, 80, 229, 1793
BsrI	ACTGG	3 cut(s)	646, 1654, 2426
BssAI	RCCGGY	4 cut(s)	33, 80, 229, 1793
BssECI	CCNNGG	4 cut(s)	90, 306, 787, 1284
BssMI	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
BssNI	GRCGYC	2 cut(s)	684, 1231
BssT1I	CCWWGG	2 cut(s)	90, 1284
Bst2UI	CCWGG	6 cut(s)	182, 308, 732, 1049, 1340, 1536
Bst4CI	ACNGT	5 cut(s)	50, 178, 762, 1292, 2337
Bst6I	CTCTTC	2 cut(s)	420, 1506
BstACI	GRCGYC	2 cut(s)	684, 1231
BstBAI	YACGTR	1 cut(s)	2153
BstDEI	CTNAG	6 cut(s)	360, 435, 1323, 1398, 2019, 2178
BstENI	CCTNNNNNAGG	1 cut(s)	1680
BstF5I	GGATG	4 cut(s)	706, 1072, 2410, 2419
BstFNI	CGCG	3 cut(s)	67, 162, 323
BstH2I	RGCGCY	2 cut(s)	687, 943
BstHHI	GCGC	4 cut(s)	325, 333, 686, 942
BstKTI	GATC	7 cut(s)	142, 580, 649, 931, 1396, 1412, 1963
BstMAI	GTCTC	2 cut(s)	1626, 1740
BstMBI	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
BstNI	CCWGG	6 cut(s)	182, 308, 732, 1049, 1340, 1536
BstNSI	RCATGY	3 cut(s)	1032, 1661, 2533
BstSCI	CCNGG	8 cut(s)	180, 306, 730, 787, 1047, 1338, 1534, 2120
BstSFI	CTRYAG	4 cut(s)	1137, 1485, 2067, 2079
BstSLI	GKGCMC	3 cut(s)	608, 749, 1714
BstSNI	TACGTA	1 cut(s)	2153
BstUI	CGCG	3 cut(s)	67, 162, 323
BstV1I	GCAGC	8 cut(s)	253, 325, 328, 758, 1123, 1456, 2081, 2488
BstV2I	GAAGAC	3 cut(s)	114, 231, 2354
BstX2I	RGATCY	3 cut(s)	577, 646, 1409
BstYI	RGATCY	3 cut(s)	577, 646, 1409
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	815, 1639
BsuRI	GGCC	4 cut(s)	95, 311, 2307, 2626
BsuTUI	ATCGAT	1 cut(s)	138
BtgZI	GCGATG	2 cut(s)	177, 2529
BtrI	CACGTC	2 cut(s)	112, 603
BtsCI	GGATG	4 cut(s)	706, 1072, 2410, 2419
BtsIMutI	CAGTG	3 cut(s)	767, 976, 1297
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	2130
CaiI	CAGNNNCTG	1 cut(s)	549
CciI	TCATGA	1 cut(s)	2278
CfoI	GCGC	4 cut(s)	325, 333, 686, 942
Cfr10I	RCCGGY	4 cut(s)	33, 80, 229, 1793
Cfr13I	GGNCC	3 cut(s)	178, 734, 2305
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	1220
CsiI	ACCWGGT	1 cut(s)	1047
Csp6I	GTAC	3 cut(s)	538, 1015, 2154
CspCI	CAANNNNNGTGG	4 cut(s)	508, 543, 1273, 1308
CviQI	GTAC	3 cut(s)	538, 1015, 2154
DdeI	CTNAG	6 cut(s)	360, 435, 1323, 1398, 2019, 2178
DinI	GGCGCC	1 cut(s)	685
DpnI	GATC	7 cut(s)	141, 579, 648, 930, 1395, 1411, 1962
DpnII	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
DrdI	GACNNNNNNGTC	1 cut(s)	2188
DriI	GACNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	2188
Eam1104I	CTCTTC	2 cut(s)	420, 1506
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	2 cut(s)	420, 1506
EciI	GGCGGA	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	2153
Eco130I	CCWWGG	2 cut(s)	90, 1284
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	983
Eco47I	GGWCC	2 cut(s)	178, 734
Eco47III	AGCGCT	1 cut(s)	941
Eco57I	CTGAAG	1 cut(s)	1383
Eco88I	CYCGRG	1 cut(s)	2582
EcoNI	CCTNNNNNAGG	1 cut(s)	1680
EcoRI	GAATTC	1 cut(s)	2266
EcoRII	CCWGG	6 cut(s)	180, 306, 730, 1047, 1338, 1534
EcoRV	GATATC	1 cut(s)	983
EcoT14I	CCWWGG	2 cut(s)	90, 1284
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	685
EheI	GGCGCC	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	90, 1284
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	2 cut(s)	770, 2075
FauI	CCCGC	2 cut(s)	213, 767
FbaI	TGATCA	1 cut(s)	1960
FokI	GGATG	4 cut(s)	693, 1079, 2417, 2426
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	1413, 1881
GlaI	GCGC	4 cut(s)	324, 332, 685, 941
GsaI	CCCAGC	2 cut(s)	229, 946
GsuI	CTGGAG	4 cut(s)	311, 663, 1401, 1971
HaeII	RGCGCY	2 cut(s)	687, 943
HaeIII	GGCC	4 cut(s)	95, 311, 2307, 2626
HapII	CCGG	8 cut(s)	34, 81, 147, 230, 460, 789, 1794, 2122
HgaI	GACGC	1 cut(s)	1220
HhaI	GCGC	4 cut(s)	325, 333, 686, 942
Hin1I	GRCGYC	2 cut(s)	684, 1231
Hin6I	GCGC	4 cut(s)	323, 331, 684, 940
HinP1I	GCGC	4 cut(s)	323, 331, 684, 940
HincII	GTYRAC	4 cut(s)	277, 1782, 2419, 2535
HindII	GTYRAC	4 cut(s)	277, 1782, 2419, 2535
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	9 cut(s)	39, 284, 378, 383, 899, 905, 966, 1369, 2168
HpaI	GTTAAC	1 cut(s)	2419
HpaII	CCGG	8 cut(s)	34, 81, 147, 230, 460, 789, 1794, 2122
HphI	GGTGA	8 cut(s)	434, 488, 1167, 1579, 1808, 2096, 2325, 2372
Hpy166II	GTNNAC	6 cut(s)	124, 277, 1712, 1782, 2419, 2535
Hpy8I	GTNNAC	6 cut(s)	124, 277, 1712, 1782, 2419, 2535
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	9 cut(s)	190, 479, 720, 853, 880, 1414, 1910, 2048, 2519
HpyCH4III	ACNGT	5 cut(s)	50, 178, 762, 1292, 2337
HpyCH4IV	ACGT	4 cut(s)	111, 602, 2152, 2298
HpyF3I	CTNAG	6 cut(s)	360, 435, 1323, 1398, 2019, 2178
HpySE526I	ACGT	4 cut(s)	111, 602, 2152, 2298
Hsp92I	GRCGYC	2 cut(s)	684, 1231
HspAI	GCGC	4 cut(s)	323, 331, 684, 940
KasI	GGCGCC	1 cut(s)	683
Kpn2I	TCCGGA	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	1960
KspAI	GTTAAC	1 cut(s)	2419
Kzo9I	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	4 cut(s)	330, 1105, 1526, 1952
Lsp1109I	GCAGC	8 cut(s)	253, 325, 328, 758, 1123, 1456, 2081, 2488
LweI	GCATC	8 cut(s)	826, 1057, 1431, 1738, 1792, 2200, 2339, 2437
MabI	ACCWGGT	1 cut(s)	1047
MaeI	CTAG	2 cut(s)	1413, 1881
MaeII	ACGT	4 cut(s)	111, 602, 2152, 2298
MaeIII	GTNAC	7 cut(s)	257, 695, 764, 1269, 2190, 2294, 2545
MalI	GATC	7 cut(s)	141, 579, 648, 930, 1395, 1411, 1962
MboI	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
MfeI	CAATTG	1 cut(s)	2451
MflI	RGATCY	3 cut(s)	577, 646, 1409
MhlI	GDGCHC	6 cut(s)	160, 608, 749, 1523, 1714, 1822
Mly113I	GGCGCC	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	293, 392
MmeI	TCCRAC	2 cut(s)	229, 378
MroI	TCCGGA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	2 cut(s)	1368, 2010
MseI	TTAA	7 cut(s)	1115, 1214, 1680, 1854, 2099, 2235, 2418
MslI	CAYNNNNRTG	3 cut(s)	601, 720, 960
MspA1I	CMGCKG	5 cut(s)	266, 771, 988, 2072, 2311
MspI	CCGG	8 cut(s)	34, 81, 147, 230, 460, 789, 1794, 2122
MspR9I	CCNGG	8 cut(s)	182, 308, 732, 789, 1049, 1340, 1536, 2122
MunI	CAATTG	1 cut(s)	2451
Mva1269I	GAATGC	2 cut(s)	1046, 2128
MvaI	CCWGG	6 cut(s)	182, 308, 732, 1049, 1340, 1536
MvnI	CGCG	3 cut(s)	67, 162, 323
NaeI	GCCGGC	1 cut(s)	35
NarI	GGCGCC	1 cut(s)	684
NciI	CCSGG	2 cut(s)	789, 2122
NdeII	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
NgoMIV	GCCGGC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	685
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	764, 1269, 2190
NruI	TCGCGA	1 cut(s)	162
NspI	RCATGY	3 cut(s)	1032, 1661, 2533
PaeI	GCATGC	1 cut(s)	1661
PagI	TCATGA	1 cut(s)	2278
PceI	AGGCCT	1 cut(s)	95
PciI	ACATGT	1 cut(s)	1028
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	1046, 2128
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	1368, 2010
PfeI	GAWTC	7 cut(s)	39, 378, 899, 905, 966, 1369, 2168
PfoI	TCCNGGA	2 cut(s)	730, 2120
PleI	GAGTC	2 cut(s)	292, 391
PluTI	GGCGCC	1 cut(s)	687
PpsI	GAGTC	2 cut(s)	292, 391
Ppu21I	YACGTR	1 cut(s)	2153
PscI	ACATGT	1 cut(s)	1028
PsiI	TTATAA	1 cut(s)	1928
Psp6I	CCWGG	6 cut(s)	180, 306, 730, 1047, 1338, 1534
PspFI	CCCAGC	2 cut(s)	225, 942
PspGI	CCWGG	6 cut(s)	180, 306, 730, 1047, 1338, 1534
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	3 cut(s)	178, 734, 2305
PstI	CTGCAG	2 cut(s)	1141, 2071
PstNI	CAGNNNCTG	1 cut(s)	549
PsuI	RGATCY	3 cut(s)	577, 646, 1409
PvuII	CAGCTG	3 cut(s)	771, 988, 2072
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	3 cut(s)	539, 1016, 2155
RsaNI	GTAC	3 cut(s)	538, 1015, 2154
RseI	CAYNNNNRTG	3 cut(s)	601, 720, 960
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	7 cut(s)	1115, 1214, 1680, 1854, 2099, 2235, 2418
Sau3AI	GATC	7 cut(s)	139, 577, 646, 928, 1393, 1409, 1960
Sau96I	GGNCC	3 cut(s)	178, 734, 2305
SchI	GAGTC	2 cut(s)	293, 392
ScrFI	CCNGG	8 cut(s)	182, 308, 732, 789, 1049, 1340, 1536, 2122
SduI	GDGCHC	6 cut(s)	160, 608, 749, 1523, 1714, 1822
SexAI	ACCWGGT	1 cut(s)	1047
SfaNI	GCATC	8 cut(s)	826, 1057, 1431, 1738, 1792, 2200, 2339, 2437
SfcI	CTRYAG	4 cut(s)	1137, 1485, 2067, 2079
SfoI	GGCGCC	1 cut(s)	685
SinI	GGWCC	2 cut(s)	178, 734
SmiMI	CAYNNNNRTG	3 cut(s)	601, 720, 960
SmlI	CTYRAG	7 cut(s)	406, 799, 1010, 1126, 1152, 1250, 2240
SmoI	CTYRAG	7 cut(s)	406, 799, 1010, 1126, 1152, 1250, 2240
SnaBI	TACGTA	1 cut(s)	2153
SphI	GCATGC	1 cut(s)	1661
SseBI	AGGCCT	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	683
SspI	AATATT	2 cut(s)	1164, 2254
SspMI	CTAG	2 cut(s)	1413, 1881
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	8 cut(s)	180, 306, 730, 787, 1047, 1338, 1534, 2120
StyI	CCWWGG	2 cut(s)	90, 1284
TaaI	ACNGT	5 cut(s)	50, 178, 762, 1292, 2337
TaiI	ACGT	4 cut(s)	114, 605, 2155, 2301
TaqI	TCGA	5 cut(s)	105, 118, 138, 381, 2599
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	7 cut(s)	39, 378, 899, 905, 966, 1369, 2168
Tru1I	TTAA	7 cut(s)	1115, 1214, 1680, 1854, 2099, 2235, 2418
Tru9I	TTAA	7 cut(s)	1115, 1214, 1680, 1854, 2099, 2235, 2418
TscAI	CASTG	3 cut(s)	767, 976, 1297
TseFI	GTSAC	3 cut(s)	764, 1269, 2190
TseI	GCWGC	8 cut(s)	266, 338, 341, 771, 1136, 1444, 2069, 2476
Tsp45I	GTSAC	3 cut(s)	764, 1269, 2190
TspDTI	ATGAA	9 cut(s)	498, 575, 585, 1206, 1595, 1596, 2013, 2019, 2481
TspGWI	ACGGA	4 cut(s)	1224, 1513, 1729, 2211
TspRI	CASTG	3 cut(s)	767, 976, 1297
VneI	GTGCAC	1 cut(s)	1710
VpaK11BI	GGWCC	2 cut(s)	178, 734
XagI	CCTNNNNNAGG	1 cut(s)	1680
XapI	RAATTY	5 cut(s)	618, 1702, 1723, 1973, 2266
XceI	RCATGY	3 cut(s)	1032, 1661, 2533
XmnI	GAANNNNTTC	2 cut(s)	1368, 2010
XspI	CTAG	2 cut(s)	1413, 1881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.