Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003121

Physical Location & Seq

Genomic Coordinates Forward (+)

24922052 .. 24923347

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAACTGGTATATTGTTCTCAGTGGTTTCTTACTGTTTATTGGTGGTTTAGGATGGGAGAGGTTGATAACCATTTTAGTATTATTTGATTTAAGCTATCGTTGTTCAGAATCAACACCTATGGTCTGCTGTGATATTTGCCAGCGTTGGGTACATTGCCATTGTGATGGGATCAGTGATGAAAAATATCAACAATATCAGTTAGATGGAAATCTCCAGTACAAATGTGCCACATGTCGTGGAGAGTGCCACCAGGTCAAGAATCATGAGGATGCTGCGAAAGAGCTTTGGAAGCGAAAAGATGAAGCTGAACGAGATTTAATTACTAGCTTAAGGGCTGCTGCAGGGTTGCCAGCCCATGAAGAAATATTTTCTATTCCTCCCTATTCTGATGATGAAGAAAATGGCCCTCCAATACAAAAGAGTGAATATGGACGTCCCTTGAAATTGTCTCTCAAAGGATTAGTTGATAAGTCACCAAAAAAGACCAAGGACAGTGGAAAGAAATCTTTAATCAGAATCCCTGCTAAGAAGAAGGAATACCAGGAAATTTCAATCAGTAATACCGAAGCAAATCAGAGTGTTCGAGGACATGGTCACCAATACCTTGGGTCGGACAAGAATGATGAGATGCATTCCTCTAAAAATGCAGAACCAGAAGTCTATTCTTCACCTCTTGCTGGAAGTGTGAGCCATACTGAAGAGATTTTCTCTGTCAGTGAGCCAAGCGTATTGAAGCACAAGTTTGTTGATGAAGTGATGTTGAATGGTGGAGATAGGACCTCCAAAGTTCGTATTAAGGGCAAGTCTCATGGTCTGGATGGTGTAGAGGACACTGGGAAGCATGCTGGCAAGTCTAAGCCTGTGAAAGAGAAGAAGCTAGTGATAAACTTTGGTGCAAAAAAGTTAAATATAACTAAATCTCCAAGTTCTGATGCTTCAACCTATCAAAGAGAACATGCTTCGGTGACCTCCAATGGTGGTGAAGATGCGAGCCAGAGGACAACAAGTACTATGGTGGGAAATAGACATGATGGTTCTGCTAATTTTGGCGATGCTAAAGGTATAAAAGGTGAAAATACAAGGACAGAATATGATTTTCTGGAAAACGGGGATTGCAGTGCACTGATCAATCCTTACTGGGCAGATATCAGAAATAACGAACCAAACACCAGATTTTGGTTACGCAGTGAAAACCTCAAGTATGAGATTAAAAACACTGCGGGGCTCTTACTCTTGAGAACCCAAAATAAAGATCATCATATTGAAAAGGATATGTTCTTTTACAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

431

Amino Acids

48.48

Weight (kDa)

7.24

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08020
fragaria_vesca	FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200 FvH4_7g01200
malus_domestica	MD02G1308700.v1.1 MD07G1013100.v1.1
prunus_persica	Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1 Prupe.2G016600_v2.0.a1
pyrus_communis	pycom02g26000 pycom07g01070
rosa_chinensis	RchiOBHm_Chr1g0316671 RchiOBHm_Chr6g0268061 RchiOBHm_Chr6g0268071
rosa_laevigata	RLG00000030643 RLG00000030647
rosa_multiflora	Rmu_sc0002667.1_g000007 Rmu_sc0005539.1_g000009 Rmu_sc0020006.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330870
rosa_rugosa	Rorug01G0012200
rosa_samantha	Rh1AG022600 Rh1BG021100 Rh1CG019700 Rh1DG017100
rosa_wichuraiana	Rw1G001450 Rw1G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	1179
AciI	CCGC	1 cut(s)	1223
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	720
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	3 cut(s)	153, 221, 1012
AfiI	CCNNNNNNNGG	4 cut(s)	148, 613, 680, 1179
AflII	CTTAAG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	6 cut(s)	445, 555, 736, 766, 942, 1268
AjnI	CCWGG	2 cut(s)	252, 543
AluBI	AGCT	5 cut(s)	96, 286, 308, 330, 880
AluI	AGCT	5 cut(s)	96, 286, 308, 330, 880
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	2 cut(s)	456, 813
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	3 cut(s)	275, 338, 341
ApoI	RAATTY	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	407, 780
AsuHPI	GGTGA	6 cut(s)	468, 590, 663, 979, 995, 1085
AvaII	GGWCC	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	1126
BanII	GRGCYC	1 cut(s)	1230
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	3 cut(s)	262, 325, 328
BccI	CCATC	5 cut(s)	48, 161, 200, 815, 1028
BciT130I	CCWGG	2 cut(s)	254, 545
BclI	TGATCA	1 cut(s)	1128
BcoDI	GTCTC	2 cut(s)	456, 813
BfaI	CTAG	2 cut(s)	327, 881
BfmI	CTRYAG	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	331
BisI	GCNGC	3 cut(s)	276, 339, 342
BlsI	GCNGC	3 cut(s)	277, 340, 343
BmcAI	AGTACT	1 cut(s)	1012
Bme1390I	CCNGG	2 cut(s)	254, 545
Bme18I	GGWCC	1 cut(s)	780
BmgT120I	GGNCC	2 cut(s)	407, 780
BmrFI	CCNGG	2 cut(s)	254, 545
BmrI	ACTGGG	2 cut(s)	846, 1150
BmsI	GCATC	5 cut(s)	262, 621, 925, 979, 1045
BmuI	ACTGGG	2 cut(s)	846, 1150
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	1184, 1258
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	489, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 613, 680, 1179
Bse1I	ACTGG	4 cut(s)	11, 217, 841, 1145
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	254, 545
BseDI	CCNNGG	2 cut(s)	489, 607
BseGI	GGATG	3 cut(s)	59, 277, 826
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	4 cut(s)	148, 613, 680, 1179
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	4 cut(s)	11, 217, 841, 1145
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	3 cut(s)	262, 325, 328
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	1126
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	4 cut(s)	148, 613, 680, 1179
BsmAI	GTCTC	2 cut(s)	456, 813
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	1126, 1230
Bsp143I	GATC	3 cut(s)	171, 1128, 1255
BspACI	CCGC	1 cut(s)	1223
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	4 cut(s)	11, 217, 841, 1145
BssECI	CCNNGG	2 cut(s)	489, 607
BssMI	GATC	3 cut(s)	171, 1128, 1255
BssNI	GRCGYC	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	489, 607
Bst2UI	CCWGG	2 cut(s)	254, 545
Bst4CI	ACNGT	2 cut(s)	36, 497
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	436
BstAFI	CTTAAG	1 cut(s)	331
BstC8I	GCNNGC	5 cut(s)	143, 354, 846, 850, 994
BstDEI	CTNAG	3 cut(s)	20, 528, 858
BstEII	GGTNACC	2 cut(s)	596, 967
BstF5I	GGATG	3 cut(s)	59, 277, 826
BstKTI	GATC	3 cut(s)	174, 1131, 1258
BstMAI	GTCTC	2 cut(s)	456, 813
BstMBI	GATC	3 cut(s)	171, 1128, 1255
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	254, 545
BstNSI	RCATGY	3 cut(s)	237, 848, 962
BstPI	GGTNACC	2 cut(s)	596, 967
BstSCI	CCNGG	2 cut(s)	252, 543
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	1126
BstV1I	GCAGC	3 cut(s)	262, 325, 328
BstXI	CCANNNNNNTGG	2 cut(s)	167, 608
BsuRI	GGCC	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	1068
BtsCI	GGATG	3 cut(s)	59, 277, 826
BtsI	GCAGTG	3 cut(s)	1126, 1195, 1218
BtsIMutI	CAGTG	9 cut(s)	28, 181, 502, 724, 834, 1124, 1126, 1195, 1218
Cac8I	GCNNGC	5 cut(s)	143, 354, 846, 850, 994
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	407, 780
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	152, 220, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	8 cut(s)	234, 266, 359, 593, 812, 845, 959, 1031
CviQI	GTAC	3 cut(s)	152, 220, 1011
DdeI	CTNAG	3 cut(s)	20, 528, 858
DpnI	GATC	3 cut(s)	173, 1130, 1257
DpnII	GATC	3 cut(s)	171, 1128, 1255
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	489, 607
Eco24I	GRGCYC	1 cut(s)	1230
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	1 cut(s)	780
Eco57I	CTGAAG	1 cut(s)	720
Eco91I	GGTNACC	2 cut(s)	596, 967
EcoO109I	RGGNCCY	1 cut(s)	780
EcoO65I	GGTNACC	2 cut(s)	596, 967
EcoRII	CCWGG	2 cut(s)	252, 543
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	2 cut(s)	489, 607
EcoT22I	ATGCAT	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	2 cut(s)	489, 607
FaeI	CATG	8 cut(s)	237, 269, 362, 596, 815, 848, 962, 1034
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	8 cut(s)	233, 265, 358, 592, 811, 844, 958, 1030
FauI	CCCGC	1 cut(s)	1216
FbaI	TGATCA	1 cut(s)	1128
Fnu4HI	GCNGC	3 cut(s)	276, 339, 342
FokI	GGATG	3 cut(s)	66, 284, 833
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	3 cut(s)	276, 339, 342
FspBI	CTAG	2 cut(s)	327, 881
GluI	GCNGC	3 cut(s)	276, 339, 342
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	8 cut(s)	237, 269, 362, 596, 815, 848, 962, 1034
HinfI	GANTC	3 cut(s)	110, 262, 519
HphI	GGTGA	6 cut(s)	468, 590, 663, 979, 995, 1085
Hpy166II	GTNNAC	1 cut(s)	1124
Hpy188I	TCNGA	7 cut(s)	109, 391, 518, 579, 616, 934, 1154
Hpy188III	TCNNGA	5 cut(s)	259, 266, 818, 1103, 1237
Hpy8I	GTNNAC	1 cut(s)	1124
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	36, 497
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	6 cut(s)	344, 634, 650, 899, 1119, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	3 cut(s)	20, 528, 858
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	8 cut(s)	237, 269, 362, 596, 815, 848, 962, 1034
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	3 cut(s)	171, 1128, 1255
Lsp1109I	GCAGC	3 cut(s)	262, 325, 328
LweI	GCATC	5 cut(s)	262, 621, 925, 979, 1045
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	2 cut(s)	327, 881
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	4 cut(s)	474, 596, 967, 1182
MalI	GATC	3 cut(s)	173, 1130, 1257
MboI	GATC	3 cut(s)	171, 1128, 1255
MboII	GAAGA	7 cut(s)	374, 410, 544, 660, 713, 886, 998
MhlI	GDGCHC	2 cut(s)	1126, 1230
MluCI	AATT	4 cut(s)	321, 446, 549, 1045
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	636
MseI	TTAA	7 cut(s)	92, 320, 332, 512, 798, 908, 1212
MslI	CAYNNNNRTG	2 cut(s)	165, 270
MspCI	CTTAAG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	254, 545
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	254, 545
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	3 cut(s)	171, 1128, 1255
NlaIII	CATG	8 cut(s)	237, 269, 362, 596, 815, 848, 962, 1034
NmuCI	GTSAC	3 cut(s)	474, 596, 967
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	3 cut(s)	237, 848, 962
PaeI	GCATGC	1 cut(s)	848
PagI	TCATGA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	233
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	110, 262, 519
PflFI	GACNNNGTC	1 cut(s)	594
PflMI	CCANNNNNTGG	1 cut(s)	1179
PkrI	GCNGC	3 cut(s)	277, 340, 343
PpuMI	RGGWCCY	1 cut(s)	780
PscI	ACATGT	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	252, 543
PspEI	GGTNACC	2 cut(s)	596, 967
PspGI	CCWGG	2 cut(s)	252, 543
PspPI	GGNCC	2 cut(s)	407, 780
PspPPI	RGGWCCY	1 cut(s)	780
PstI	CTGCAG	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	594
RsaI	GTAC	3 cut(s)	153, 221, 1012
RsaNI	GTAC	3 cut(s)	152, 220, 1011
RseI	CAYNNNNRTG	2 cut(s)	165, 270
SaqAI	TTAA	7 cut(s)	92, 320, 332, 512, 798, 908, 1212
SatI	GCNGC	3 cut(s)	276, 339, 342
Sau3AI	GATC	3 cut(s)	171, 1128, 1255
Sau96I	GGNCC	2 cut(s)	407, 780
ScaI	AGTACT	1 cut(s)	1012
ScrFI	CCNGG	2 cut(s)	254, 545
SduI	GDGCHC	2 cut(s)	1126, 1230
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	5 cut(s)	262, 621, 925, 979, 1045
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	165, 270
SmlI	CTYRAG	3 cut(s)	331, 1199, 1237
SmoI	CTYRAG	3 cut(s)	331, 1199, 1237
SphI	GCATGC	1 cut(s)	848
Sse9I	AATT	4 cut(s)	321, 446, 549, 1045
SsiI	CCGC	1 cut(s)	1223
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	327, 881
StyD4I	CCNGG	2 cut(s)	252, 543
StyI	CCWWGG	2 cut(s)	489, 607
TaaI	ACNGT	2 cut(s)	36, 497
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	586
TasI	AATT	4 cut(s)	321, 446, 549, 1045
TatI	WGTACW	2 cut(s)	219, 1010
TfiI	GAWTC	3 cut(s)	110, 262, 519
Tru1I	TTAA	7 cut(s)	92, 320, 332, 512, 798, 908, 1212
Tru9I	TTAA	7 cut(s)	92, 320, 332, 512, 798, 908, 1212
TscAI	CASTG	9 cut(s)	28, 181, 502, 724, 841, 1126, 1131, 1195, 1225
TseFI	GTSAC	3 cut(s)	474, 596, 967
TseI	GCWGC	3 cut(s)	275, 338, 341
Tsp45I	GTSAC	3 cut(s)	474, 596, 967
TspDTI	ATGAA	6 cut(s)	17, 195, 318, 375, 411, 768
TspRI	CASTG	9 cut(s)	28, 181, 502, 724, 841, 1126, 1131, 1195, 1225
Tth111I	GACNNNGTC	1 cut(s)	594
Van91I	CCANNNNNTGG	1 cut(s)	1179
Vha464I	CTTAAG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	1 cut(s)	780
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	3 cut(s)	237, 848, 962
XspI	CTAG	2 cut(s)	327, 881
ZraI	GACGTC	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	1012
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.