RchiOBHm_Chr6g0268071

PHD finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003121
Physical Location & Seq
Forward (+)
24924194 .. 24924769
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24044

Sequence Viewer

Length: 576 bp
ATGACTGCTAGTGAGCCTGGAGTTGAGATCCCCACTATGAGAAATAACAAGGTATACTCAAGGAAGCACTCAGAAAGCAGGTCTGCTGTATCTGCTCATAGGAATGATGATTCTGGCCAAACACCAGTTTCACTTTCTTCCTCCAAAGATCATAAGCCTTTGTTGAAGTTTAAGCTTAAGAAACCTAATGTTGAAAGCCAGAGTTCTTCTCAGCATGAAGAAGAAAAAAGTTCTGTTAAGGGCCAACGGTCAAAAAGAAAGAGACCATCACCGTTTATGGAGAAAACATCATTTAGTGAAAATGATGATAGGGGACCGTCGGTTGAAGATAATTTAATGGATGAGATCATGGATGCTAATTGGATATTGAAAAAGTTGGGAAAAGATGCGGTTGGAAAGCGAGTTGAAGTACAGCAGCTATCAGACAATTCATGGCACAAAGGAGTCGTTAGTGATGTTATTGAAGGCACATCACTGTTATCCGTTACTTTAGATGATGGCAAAGTCAAATCTCTGGAACTTGGAAAGCAAGGGGTTCGCTTTGTATCCCAGAAGCAGAAGAGGTCAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

191

Amino Acids

21.36

Weight (kDa)

9.61

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 411
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 6 cut(s) 166, 194, 326, 370, 407, 464
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 175, 418
AluI AGCT 2 cut(s) 175, 418
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 22
AoxI GGCC 2 cut(s) 115, 241
ApeKI GCWGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 241, 314
AsuHPI GGTGA 1 cut(s) 261
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 427
BccI CCATC 2 cut(s) 274, 491
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 69
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 241, 314
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 343, 376
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 346, 358
BseMII CTCAG 2 cut(s) 84, 224
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 427
BshFI GGCC 2 cut(s) 117, 243
BslFI GGGAC 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 2 cut(s) 117, 243
Bso31I GGTCTC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 27, 148, 345
BspACI CCGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 117, 243
BspCNI CTCAG 2 cut(s) 83, 223
BspLI GGNNCC 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 22
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 125
BssMI GATC 3 cut(s) 27, 148, 345
BssNAI GTATAC 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 4 cut(s) 249, 273, 318, 477
Bst6I CTCTTC 1 cut(s) 554
BstAFI CTTAAG 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 70, 210
BstF5I GGATG 2 cut(s) 346, 358
BstKTI GATC 3 cut(s) 30, 151, 348
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 27, 148, 345
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 55
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 117, 243
BtsCI GGATG 2 cut(s) 346, 358
BtsIMutI CAGTG 1 cut(s) 473
BveI ACCTGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 241, 314
Csp6I GTAC 1 cut(s) 410
CviAII CATG 4 cut(s) 215, 349, 432, 573
CviJI RGCY 7 cut(s) 16, 117, 157, 175, 198, 243, 418
CviKI_1 RGCY 7 cut(s) 16, 117, 157, 175, 198, 243, 418
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 70, 210
DpnI GATC 3 cut(s) 29, 150, 347
DpnII GATC 3 cut(s) 27, 148, 345
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 16
FaeI CATG 4 cut(s) 218, 352, 435, 576
FaiI YATR 9 cut(s) 38, 55, 99, 153, 216, 278, 350, 433, 574
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 214, 348, 431, 572
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 353, 365
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 117, 243
Hin1II CATG 4 cut(s) 218, 352, 435, 576
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 110, 444
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 73, 424
Hpy188III TCNNGA 2 cut(s) 515, 567
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 4 cut(s) 249, 273, 318, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 70, 210
Hsp92II CATG 4 cut(s) 218, 352, 435, 576
Kzo9I GATC 3 cut(s) 27, 148, 345
LpnPI CCDG 8 cut(s) 3, 30, 64, 99, 138, 212, 500, 563
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 343, 376
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 29, 150, 347
MboI GATC 3 cut(s) 27, 148, 345
MboII GAAGA 6 cut(s) 129, 198, 230, 233, 338, 571
MflI RGATCY 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 331, 358, 427
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 2 cut(s) 151, 555
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 4 cut(s) 171, 177, 237, 335
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 27, 148, 345
NlaIII CATG 4 cut(s) 218, 352, 435, 576
NlaIV GGNNCC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 2 cut(s) 241, 314
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 4 cut(s) 171, 177, 237, 335
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 3 cut(s) 27, 148, 345
Sau96I GGNCC 2 cut(s) 241, 314
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 54, 83, 177, 187, 420, 566
SfaNI GCATC 2 cut(s) 343, 376
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 58, 176
SmoI CTYRAG 2 cut(s) 58, 176
Sse9I AATT 3 cut(s) 331, 358, 427
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 4 cut(s) 249, 273, 318, 477
TasI AATT 3 cut(s) 331, 358, 427
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 4 cut(s) 171, 177, 237, 335
Tru9I TTAA 4 cut(s) 171, 177, 237, 335
TscAI CASTG 1 cut(s) 480
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 231, 420
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 1 cut(s) 480
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.