AT3G09600
MYB Family

circadian rhythm

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003729
Physical Location & Seq
Forward (+)
2946239 .. 2949017
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09600.8

Sequence Viewer

Length: 897 bp
ATGAGCTCGTCGCCGTCAAGAAATCCAACGAACGCCGAAGCACCTCCGCCACCACCAACATCGACGGATGCTGTGGCAGAGGGTTCGTCTAAGAAAGTGAGGAAACCATATACCATCACCAAGTCAAGAGAGAGCTGGACAGAGGAAGAGCACGATAAGTTTCTTGAAGCACTTCAACTGTTTGATCGTGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAAGACTGTGATTCAGATAAGGAGTCATGCTCAAAAATACTTTCTCAAGGTTCAGAAAAACGGGACATTAGCTCATGTGCCACCTCCTCGACCTAAGCGCAAAGCAGCTCATCCGTATCCTCAAAAGGCATCAAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTACGCGAAATGGCGACATGCCGGGATATGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGTTATTTCACCACAACATGAACTTGCTACTCTTCGTGGAGCAGAAGCTGATATTGGATCAAAGGGCTTATTAAATGTTAGTAGCCCTTCTACATCTGGCATGGGAAGCTCAAGCCGAACAGTATCAGGTTCTGAGATTGTAAGAAAGGCTAAACAGCCTCCAGTGCTTCACGGTGTTCCTGATTTTGCTGAAGTTTATAATTTCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCATGTGGAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTTCTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAACCCTGATTTAGAATCCACTAGGAAAGTCCTCTTATCATATGACAACGTGACGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGACAAATCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

298

Amino Acids

32.8

Weight (kDa)

9.2

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVE6 PF24904 157 - 219 4.5e-33 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccII CGCG 1 cut(s) 403
AciI CCGC 1 cut(s) 47
AclWI GGATC 4 cut(s) 526, 677, 719, 732
AcsI RAATTY 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 672
AgsI TTSAA 5 cut(s) 167, 176, 206, 222, 377
AjiI CACGTC 1 cut(s) 387
AjuI GAANNNNNNNTTGG 6 cut(s) 198, 230, 498, 530, 841, 873
AluBI AGCT 8 cut(s) 6, 135, 293, 329, 509, 570, 712, 844
AluI AGCT 8 cut(s) 6, 135, 293, 329, 509, 570, 712, 844
Alw21I GWGCWC 3 cut(s) 8, 153, 846
AlwI GGATC 4 cut(s) 526, 677, 719, 732
AlwNI CAGNNNCTG 2 cut(s) 509, 593
AoxI GGCC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 326, 451
ApoI RAATTY 1 cut(s) 733
Asp700I GAANNNNTTC 2 cut(s) 171, 744
AspLEI GCGC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 109, 462
AsuII TTCGAA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 724
BanII GRGCYC 2 cut(s) 8, 846
Bbv12I GWGCWC 3 cut(s) 8, 153, 846
BbvI GCAGC 2 cut(s) 338, 438
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciVI GTATCC 1 cut(s) 348
BcnI CCSGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 804
BfuI GTATCC 1 cut(s) 348
BisI GCNGC 2 cut(s) 327, 452
BlsI GCNGC 2 cut(s) 328, 453
Bme1390I CCNGG 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 726
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 3 cut(s) 58, 359, 430
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 3 cut(s) 251, 556, 698
BpuMI CCSGG 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 197, 623
BseGI GGATG 3 cut(s) 73, 331, 442
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 2 cut(s) 197, 623
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 338, 438
Bsh1236I CGCG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 840
BsiHKAI GWGCWC 3 cut(s) 8, 153, 846
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 699
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 3 cut(s) 8, 153, 846
Bsp143I GATC 4 cut(s) 184, 518, 682, 724
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 699
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 726
BspPI GGATC 4 cut(s) 526, 677, 719, 732
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 738
BsrI ACTGG 2 cut(s) 197, 623
BssMI GATC 4 cut(s) 184, 518, 682, 724
Bst4CI ACNGT 6 cut(s) 180, 229, 583, 635, 745, 772
Bst6I CTCTTC 2 cut(s) 141, 498
BstBI TTCGAA 1 cut(s) 738
BstDEI CTNAG 3 cut(s) 90, 315, 594
BstF5I GGATG 3 cut(s) 73, 331, 442
BstFNI CGCG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 4 cut(s) 187, 521, 685, 727
BstMBI GATC 4 cut(s) 184, 518, 682, 724
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 2 cut(s) 567, 625
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 418
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 338, 438
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 699
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 3 cut(s) 73, 331, 442
BtsIMutI CAGTG 1 cut(s) 630
CaiI CAGNNNCTG 2 cut(s) 509, 593
CfoI GCGC 1 cut(s) 321
CviAII CATG 7 cut(s) 248, 296, 415, 432, 479, 562, 701
DdeI CTNAG 3 cut(s) 90, 315, 594
DpnI GATC 4 cut(s) 186, 520, 684, 726
DpnII GATC 4 cut(s) 184, 518, 682, 724
Eam1104I CTCTTC 2 cut(s) 141, 498
EarI CTCTTC 2 cut(s) 141, 498
EciI GGCGGA 1 cut(s) 36
Ecl136II GAGCTC 2 cut(s) 6, 844
Eco24I GRGCYC 2 cut(s) 8, 846
Eco53kI GAGCTC 2 cut(s) 6, 844
Eco57I CTGAAG 1 cut(s) 672
EcoICRI GAGCTC 2 cut(s) 6, 844
EcoT38I GRGCYC 2 cut(s) 8, 846
FaeI CATG 7 cut(s) 251, 299, 418, 435, 482, 565, 704
FaqI GGGAC 1 cut(s) 298
FatI CATG 7 cut(s) 247, 295, 414, 431, 478, 561, 700
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 2 cut(s) 327, 452
FokI GGATG 3 cut(s) 80, 318, 449
FriOI GRGCYC 2 cut(s) 8, 846
Fsp4HI GCNGC 2 cut(s) 327, 452
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 320
GluI GCNGC 2 cut(s) 327, 452
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 1 cut(s) 699
HapII CCGG 1 cut(s) 419
HhaI GCGC 1 cut(s) 321
Hin1II CATG 7 cut(s) 251, 299, 418, 435, 482, 565, 704
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 232, 244, 797
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 109, 462
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 3 cut(s) 237, 276, 595
Hpy188III TCNNGA 7 cut(s) 18, 126, 164, 188, 641, 686, 868
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 2 cut(s) 13, 67
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 6 cut(s) 180, 229, 583, 635, 745, 772
HpyCH4IV ACGT 2 cut(s) 386, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 625
HpyF3I CTNAG 3 cut(s) 90, 315, 594
HpySE526I ACGT 2 cut(s) 386, 831
Hsp92II CATG 7 cut(s) 251, 299, 418, 435, 482, 565, 704
HspAI GCGC 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 4 cut(s) 184, 518, 682, 724
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 500, 849
LpnPI CCDG 9 cut(s) 121, 178, 432, 543, 573, 636, 654, 699, 801
Lsp1109I GCAGC 2 cut(s) 338, 438
LweI GCATC 3 cut(s) 58, 359, 430
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 386, 831
MaeIII GTNAC 2 cut(s) 188, 832
MalI GATC 4 cut(s) 186, 520, 684, 726
MboI GATC 4 cut(s) 184, 518, 682, 724
MboII GAAGA 5 cut(s) 158, 208, 211, 218, 485
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 3 cut(s) 8, 153, 846
MluCI AATT 2 cut(s) 661, 733
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 171, 744
MseI TTAA 2 cut(s) 533, 774
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 567, 625
NciI CCSGG 1 cut(s) 420
NdeI CATATG 1 cut(s) 823
NdeII GATC 4 cut(s) 184, 518, 682, 724
NlaIII CATG 7 cut(s) 251, 299, 418, 435, 482, 565, 704
NlaIV GGNNCC 1 cut(s) 726
NmuCI GTSAC 2 cut(s) 188, 832
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PdmI GAANNNNTTC 2 cut(s) 171, 744
PfeI GAWTC 2 cut(s) 232, 797
PkrI GCNGC 2 cut(s) 328, 453
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PsiI TTATAA 1 cut(s) 660
Psp124BI GAGCTC 2 cut(s) 8, 846
PspN4I GGNNCC 1 cut(s) 726
PstNI CAGNNNCTG 2 cut(s) 509, 593
PsuI RGATCY 1 cut(s) 724
SacI GAGCTC 2 cut(s) 8, 846
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 533, 774
SatI GCNGC 2 cut(s) 327, 452
Sau3AI GATC 4 cut(s) 184, 518, 682, 724
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 3 cut(s) 8, 153, 846
SfaNI GCATC 3 cut(s) 58, 359, 430
SfuI TTCGAA 1 cut(s) 738
SmlI CTYRAG 3 cut(s) 266, 571, 713
SmoI CTYRAG 3 cut(s) 266, 571, 713
Sse9I AATT 2 cut(s) 661, 733
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 804
SstI GAGCTC 2 cut(s) 8, 846
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 6 cut(s) 180, 229, 583, 635, 745, 772
TaiI ACGT 2 cut(s) 389, 834
TaqI TCGA 3 cut(s) 62, 310, 738
TaqII GACCGA 1 cut(s) 854
TasI AATT 2 cut(s) 661, 733
TfiI GAWTC 2 cut(s) 232, 797
Tru1I TTAA 2 cut(s) 533, 774
Tru9I TTAA 2 cut(s) 533, 774
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 2 cut(s) 188, 832
TseI GCWGC 2 cut(s) 326, 451
Tsp45I GTSAC 2 cut(s) 188, 832
TspDTI ATGAA 3 cut(s) 420, 495, 655
TspGWI ACGGA 2 cut(s) 80, 324
TspRI CASTG 1 cut(s) 630
XapI RAATTY 1 cut(s) 733
XceI RCATGY 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 171, 744
XspI CTAG 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.