AT5G02840
MYB Family

circadian rhythm

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003729
Physical Location & Seq
Forward (+)
648648 .. 651979
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02840.4

Sequence Viewer

Length: 882 bp
ATGACCTCAACCAATCCGGTGGTCGCCGAAGTAATACCGGCGGAAACTTCTACAGATGCTACAGAGACGACGATTGCAACGACGGAAGCTGGTGAAGCACCGGAGAAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGAGAACACGACAAGTTTCTGGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAAGACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAAAAAAATGGGACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCAAAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTCCTTTCCTACTCAAATAAATAACCTGCCTGGATATACTCCATGGGATGATGATACATCTGCATTGTTAAACATTGCTGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACTCTTTGTGGAGCAGAAGTTGATGTTGGATCAAATGACATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATCGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTGAGACTGGCGAAACAAGCTCCCTCAATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTGTTCGATCCTGACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTTTTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTTGAACCTACTTCTGAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTAAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

293

Amino Acids

32.21

Weight (kDa)

5.25

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 48 - 93 4.1e-11 Myb-like DNA-binding domain
RVE6 PF24904 222 - 258 2.1e-17 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
Acc36I ACCTGC 1 cut(s) 435
AciI CCGC 2 cut(s) 41, 727
AclWI GGATC 4 cut(s) 553, 704, 746, 759
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 2 cut(s) 177, 561
AflII CTTAAG 1 cut(s) 871
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 3 cut(s) 191, 237, 824
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 430
AjuI GAANNNNNNNTTGG 6 cut(s) 213, 245, 261, 293, 525, 557
AluBI AGCT 8 cut(s) 89, 122, 185, 341, 597, 647, 739, 876
AluI AGCT 8 cut(s) 89, 122, 185, 341, 597, 647, 739, 876
Alw26I GTCTC 2 cut(s) 59, 625
AlwI GGATC 4 cut(s) 553, 704, 746, 759
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 2 cut(s) 326, 724
ApeKI GCWGC 2 cut(s) 341, 848
ApoI RAATTY 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 3 cut(s) 104, 124, 124
AsuII TTCGAA 1 cut(s) 765
AvaII GGWCC 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 323
BamHI GGATCC 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 656
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 328, 835
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 59, 625
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 3 cut(s) 141, 324, 570
BfmI CTRYAG 3 cut(s) 51, 60, 849
BfrI CTTAAG 1 cut(s) 871
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 3 cut(s) 342, 727, 849
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 3 cut(s) 343, 728, 850
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 260, 753
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 4 cut(s) 46, 374, 590, 835
BpiI GAAGAC 1 cut(s) 656
Bpu10I CCTNAGC 2 cut(s) 330, 678
Bpu14I TTCGAA 1 cut(s) 765
BpuEI CTTGAG 2 cut(s) 583, 725
BsaJI CCNNGG 2 cut(s) 323, 443
BsaWI WCCGGW 2 cut(s) 16, 100
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 212, 639
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 323, 443
BseGI GGATG 2 cut(s) 346, 454
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 669
BseNI ACTGG 2 cut(s) 212, 639
BseXI GCAGC 2 cut(s) 328, 835
BshFI GGCC 2 cut(s) 328, 726
BsiSI CCGG 3 cut(s) 17, 38, 101
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 59, 625
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 2 cut(s) 328, 726
Bsp119I TTCGAA 1 cut(s) 765
Bsp143I GATC 5 cut(s) 199, 252, 545, 709, 751
Bsp19I CCATGG 1 cut(s) 443
BspACI CCGC 2 cut(s) 41, 727
BspANI GGCC 2 cut(s) 328, 726
BspCNI CTCAG 1 cut(s) 670
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 2 cut(s) 260, 753
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 4 cut(s) 553, 704, 746, 759
BspQI GCTCTTC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 871
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 212, 639
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 323, 443
BssMI GATC 5 cut(s) 199, 252, 545, 709, 751
BssT1I CCWWGG 2 cut(s) 323, 443
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 244, 772, 799
Bst6I CTCTTC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 765
BstDEI CTNAG 4 cut(s) 330, 621, 678, 879
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 2 cut(s) 346, 454
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 5 cut(s) 202, 255, 548, 712, 754
BstMAI GTCTC 2 cut(s) 59, 625
BstMBI GATC 5 cut(s) 199, 252, 545, 709, 751
BstMWI GCNNNNNNNGC 3 cut(s) 95, 644, 726
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 3 cut(s) 51, 60, 849
BstV1I GCAGC 2 cut(s) 328, 835
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 2 cut(s) 19, 296
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 2 cut(s) 328, 726
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 2 cut(s) 346, 454
BtsIMutI CAGTG 1 cut(s) 804
BveI ACCTGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 8 cut(s) 263, 311, 400, 444, 556, 659, 730, 863
DdeI CTNAG 4 cut(s) 330, 621, 678, 879
DpnI GATC 5 cut(s) 201, 254, 547, 711, 753
DpnII GATC 5 cut(s) 199, 252, 545, 709, 751
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 323, 443
Eco147I AGGCCT 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 177, 561
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 323, 443
EcoT22I ATGCAT 1 cut(s) 660
ErhI CCWWGG 2 cut(s) 323, 443
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 8 cut(s) 266, 314, 403, 447, 559, 662, 733, 866
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 313
FatI CATG 8 cut(s) 262, 310, 399, 443, 555, 658, 729, 862
Fnu4HI GCNGC 3 cut(s) 342, 727, 849
FokI GGATG 2 cut(s) 333, 461
Fsp4HI GCNGC 3 cut(s) 342, 727, 849
FspBI CTAG 3 cut(s) 141, 324, 570
GlaI GCGC 1 cut(s) 335
GluI GCNGC 3 cut(s) 342, 727, 849
HaeIII GGCC 2 cut(s) 328, 726
HapII CCGG 3 cut(s) 17, 38, 101
HhaI GCGC 1 cut(s) 336
Hin1II CATG 8 cut(s) 266, 314, 403, 447, 559, 662, 733, 866
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 617
HpaII CCGG 3 cut(s) 17, 38, 101
HphI GGTGA 3 cut(s) 104, 124, 124
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 4 cut(s) 252, 593, 616, 835
Hpy188III TCNNGA 7 cut(s) 141, 179, 203, 256, 668, 713, 863
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 2 cut(s) 73, 85
HpyAV CCTTC 4 cut(s) 103, 152, 585, 851
HpyCH4III ACNGT 3 cut(s) 244, 772, 799
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 77, 464, 658, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 644, 726
HpyF3I CTNAG 4 cut(s) 330, 621, 678, 879
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 8 cut(s) 266, 314, 403, 447, 559, 662, 733, 866
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 5 cut(s) 199, 252, 545, 709, 751
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 258, 527, 652
Lsp1109I GCAGC 2 cut(s) 328, 835
LweI GCATC 4 cut(s) 46, 374, 590, 835
MaeI CTAG 3 cut(s) 141, 324, 570
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 203
MalI GATC 5 cut(s) 201, 254, 547, 711, 753
MboI GATC 5 cut(s) 199, 252, 545, 709, 751
MboII GAAGA 5 cut(s) 118, 179, 233, 515, 656
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 1 cut(s) 751
MluCI AATT 2 cut(s) 191, 760
MmeI TCCRAC 2 cut(s) 131, 523
MnlI CCTC 7 cut(s) 16, 108, 366, 661, 673, 803, 847
Mph1103I ATGCAT 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 470, 872
MspCI CTTAAG 1 cut(s) 871
MspI CCGG 3 cut(s) 17, 38, 101
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 95, 644, 726
NcoI CCATGG 1 cut(s) 443
NdeII GATC 5 cut(s) 199, 252, 545, 709, 751
NlaIII CATG 8 cut(s) 266, 314, 403, 447, 559, 662, 733, 866
NlaIV GGNNCC 2 cut(s) 260, 753
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 660
NspI RCATGY 1 cut(s) 314
NspV TTCGAA 1 cut(s) 765
PagI TCATGA 1 cut(s) 862
PceI AGGCCT 1 cut(s) 328
PciI ACATGT 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 617
PkrI GCNGC 3 cut(s) 343, 728, 850
PscI ACATGT 1 cut(s) 310
PsiI TTATAA 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 260, 753
PspPI GGNCC 1 cut(s) 286
PstI CTGCAG 1 cut(s) 853
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 470, 872
SatI GCNGC 3 cut(s) 342, 727, 849
Sau3AI GATC 5 cut(s) 199, 252, 545, 709, 751
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 432
SfaNI GCATC 4 cut(s) 46, 374, 590, 835
SfcI CTRYAG 3 cut(s) 51, 60, 849
SfuI TTCGAA 1 cut(s) 765
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 3 cut(s) 598, 740, 871
SmoI CTYRAG 3 cut(s) 598, 740, 871
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 2 cut(s) 191, 760
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 2 cut(s) 41, 727
SspMI CTAG 3 cut(s) 141, 324, 570
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 2 cut(s) 323, 443
TaaI ACNGT 3 cut(s) 244, 772, 799
TaiI ACGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 368, 708, 765
TasI AATT 2 cut(s) 191, 760
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 2 cut(s) 470, 872
Tru9I TTAA 2 cut(s) 470, 872
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 341, 848
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 522, 682, 746, 879
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 804
Vha464I CTTAAG 1 cut(s) 871
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 760
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 3 cut(s) 141, 324, 570
Zsp2I ATGCAT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.