Prupe.6G242700_v2.0.a1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003729
Physical Location & Seq
Reverse (-)
24104546 .. 24108026
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G242700.1

Sequence Viewer

Length: 885 bp
ATGAACTCCACTTCTTCCAACAACCCCCAATCAATGGGAGCAGCCTCAACGCCCTCAGACGGGTCGGGCAAGAAGGTCCGCAAGCCCTACACCATCACCAAGTCCAGAGAAAGCTGGACCGACGAAGAGCACGACAAGTTCCTCGAAGCTCTTCAACTGTTTGACCGTGACTGGAAGAAGATTGAAGATTTTGTGGGTTCGAAAACGGTTATTCAGATTCGAAGTCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAGCGGGACAACAGCTCATGTGCCTCCTCCGCGGCCAAAGCGCAAGGCTGCTCATCCTTACCCGCAAAAGGCCTCCAAAAATGCTTTAGTTCCGTTGCGAGCATCCATTCCGTATCCTTCTTCGATGAATGCCATTGCATCTACCTATTCTCCTTGGGATGAAACTTCCATTATGATAAATCCTGCATCAAACCAAATTCTGTTGTCACATGAAGAATTTACAAGTTTTCAAGGAACTGAAGCTGATATTAGATCAAAGGGGCTAGCAAGGATTAACAAATGCAGTCTAAGCGGAATCGAAAGCTCAAGTAGAACCCTACCAAGTTCTGAGATACCAGAGCAAGGGAAACAAGCTCCTTTGCTTCATGGTATTCCTGATTTTTCTGAAGTTTATAGCTTCATTGGGAGTGTTTTTGATCCAGACTCAAAAGGTCATGCTCAGAAACTCAGGGAGATGGATCCCATCAATTTCGAAACTGTTTTGTTGTTGATGAGAAATCTTAGTATCAACTTGTCTAGTCCAGACTTTGAGCCAATTAGGGAAGTCCTAGTATCATATGATGTCAATACAAAAACAGTAGCTGCAGGAATTGTTACCACGAAGCTGAATAATGATCTGTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.53

Weight (kDa)

8.78

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 1 cut(s) 289
AciI CCGC 6 cut(s) 79, 261, 287, 289, 320, 549
AclWI GGATC 3 cut(s) 668, 710, 723
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 2 cut(s) 453, 473
AcuI CTGAAG 2 cut(s) 516, 663
AfiI CCNNNNNNNGG 5 cut(s) 34, 59, 60, 325, 599
AgsI TTSAA 5 cut(s) 155, 185, 247, 254, 488
AluBI AGCT 9 cut(s) 114, 149, 272, 500, 561, 611, 654, 839, 862
AluI AGCT 9 cut(s) 114, 149, 272, 500, 561, 611, 654, 839, 862
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 3 cut(s) 668, 710, 723
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 2 cut(s) 290, 327
ApeKI GCWGC 3 cut(s) 41, 305, 839
ApoI RAATTY 2 cut(s) 453, 473
Asp700I GAANNNNTTC 2 cut(s) 150, 239
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 76, 117
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 3 cut(s) 200, 220, 729
AsuNHI GCTAGC 1 cut(s) 520
AvaII GGWCC 2 cut(s) 76, 117
BamHI GGATCC 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 53, 292, 826
BccI CCATC 3 cut(s) 101, 706, 728
BciVI GTATCC 1 cut(s) 381
BfaI CTAG 3 cut(s) 521, 774, 806
BfmI CTRYAG 1 cut(s) 840
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 4 cut(s) 42, 290, 306, 840
BlsI GCNGC 4 cut(s) 43, 291, 307, 841
Bme18I GGWCC 2 cut(s) 76, 117
BmgT120I GGNCC 2 cut(s) 76, 117
BmiI GGNNCC 1 cut(s) 717
BmsI GCATC 3 cut(s) 368, 404, 452
BmtI GCTAGC 1 cut(s) 524
Bpu14I TTCGAA 3 cut(s) 200, 220, 729
BpuEI CTTGAG 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 287, 410
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 59, 60, 325, 599
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 287, 410
BseGI GGATG 3 cut(s) 310, 359, 421
BseLI CCNNNNNNNGG 5 cut(s) 34, 59, 60, 325, 599
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 5 cut(s) 69, 245, 576, 710, 718
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 53, 292, 826
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 2 cut(s) 292, 329
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 5 cut(s) 34, 59, 60, 325, 599
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 292, 329
Bsp119I TTCGAA 3 cut(s) 200, 220, 729
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 4 cut(s) 509, 673, 715, 871
BspACI CCGC 6 cut(s) 79, 261, 287, 289, 320, 549
BspANI GGCC 2 cut(s) 292, 329
BspCNI CTCAG 5 cut(s) 68, 244, 577, 709, 717
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 844
BspOI GCTAGC 1 cut(s) 524
BspPI GGATC 3 cut(s) 668, 710, 723
BspQI GCTCTTC 2 cut(s) 120, 156
BspT104I TTCGAA 3 cut(s) 200, 220, 729
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 287, 410
BssMI GATC 4 cut(s) 509, 673, 715, 871
BssT1I CCWWGG 1 cut(s) 410
Bst4CI ACNGT 5 cut(s) 159, 167, 208, 736, 835
Bst6I CTCTTC 2 cut(s) 120, 156
BstBI TTCGAA 3 cut(s) 200, 220, 729
BstC8I GCNNGC 3 cut(s) 83, 357, 522
BstDEI CTNAG 7 cut(s) 55, 231, 545, 585, 696, 704, 758
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 310, 359, 421
BstFNI CGCG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 4 cut(s) 512, 676, 718, 874
BstMBI GATC 4 cut(s) 509, 673, 715, 871
BstMWI GCNNNNNNNGC 3 cut(s) 286, 295, 546
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 53, 292, 826
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuI GTATCC 1 cut(s) 381
BsuRI GGCC 2 cut(s) 292, 329
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 3 cut(s) 310, 359, 421
Cac8I GCNNGC 3 cut(s) 83, 357, 522
CaiI CAGNNNCTG 1 cut(s) 839
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 76, 117
Cfr42I CCGCGG 1 cut(s) 290
CviAII CATG 5 cut(s) 227, 275, 467, 623, 692
DdeI CTNAG 7 cut(s) 55, 231, 545, 585, 696, 704, 758
DpnI GATC 4 cut(s) 511, 675, 717, 873
DpnII GATC 4 cut(s) 509, 673, 715, 871
EaeI YGGCCR 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 120, 156
EarI CTCTTC 2 cut(s) 120, 156
Eco130I CCWWGG 1 cut(s) 410
Eco147I AGGCCT 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 76, 117
Eco57I CTGAAG 2 cut(s) 516, 663
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 5 cut(s) 230, 278, 470, 626, 695
FaiI YATR 9 cut(s) 228, 276, 431, 468, 624, 651, 693, 814, 816
FaqI GGGAC 1 cut(s) 277
FatI CATG 5 cut(s) 226, 274, 466, 622, 691
FauI CCCGC 2 cut(s) 254, 327
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 4 cut(s) 42, 290, 306, 840
FokI GGATG 3 cut(s) 297, 346, 428
Fsp4HI GCNGC 4 cut(s) 42, 290, 306, 840
FspBI CTAG 3 cut(s) 521, 774, 806
GlaI GCGC 1 cut(s) 299
GluI GCNGC 4 cut(s) 42, 290, 306, 840
HaeIII GGCC 2 cut(s) 292, 329
HhaI GCGC 1 cut(s) 300
Hin1II CATG 5 cut(s) 230, 278, 470, 626, 695
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 3 cut(s) 217, 552, 680
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 6 cut(s) 58, 216, 234, 586, 643, 699
Hpy188III TCNNGA 5 cut(s) 105, 244, 632, 677, 779
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 67, 384
HpyCH4III ACNGT 5 cut(s) 159, 167, 208, 736, 835
HpyCH4V TGCA 4 cut(s) 395, 443, 540, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 295, 546
HpyF3I CTNAG 7 cut(s) 55, 231, 545, 585, 696, 704, 758
Hsp92II CATG 5 cut(s) 230, 278, 470, 626, 695
HspAI GCGC 1 cut(s) 298
KspI CCGCGG 1 cut(s) 290
Kzo9I GATC 4 cut(s) 509, 673, 715, 871
LguI GCTCTTC 2 cut(s) 120, 156
LmnI GCTCC 2 cut(s) 38, 616
Lsp1109I GCAGC 3 cut(s) 53, 292, 826
LweI GCATC 3 cut(s) 368, 404, 452
MaeI CTAG 3 cut(s) 521, 774, 806
MaeIII GTNAC 3 cut(s) 167, 462, 850
MalI GATC 4 cut(s) 511, 675, 717, 873
MbiI CCGCTC 1 cut(s) 261
MboI GATC 4 cut(s) 509, 673, 715, 871
MboII GAAGA 8 cut(s) 6, 137, 143, 187, 190, 197, 369, 482
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 5 cut(s) 453, 473, 724, 792, 846
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 6 cut(s) 55, 64, 152, 291, 294, 340
MroXI GAANNNNTTC 2 cut(s) 150, 239
MseI TTAA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 391
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 3 cut(s) 286, 295, 546
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 509, 673, 715, 871
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 5 cut(s) 230, 278, 470, 626, 695
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 2 cut(s) 167, 462
NspV TTCGAA 3 cut(s) 200, 220, 729
PceI AGGCCT 1 cut(s) 329
PciSI GCTCTTC 2 cut(s) 120, 156
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 2 cut(s) 150, 239
PfeI GAWTC 2 cut(s) 217, 552
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 4 cut(s) 43, 291, 307, 841
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 76, 117
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 715
SacII CCGCGG 1 cut(s) 290
SapI GCTCTTC 2 cut(s) 120, 156
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 42, 290, 306, 840
Sau3AI GATC 4 cut(s) 509, 673, 715, 871
Sau96I GGNCC 2 cut(s) 76, 117
SchI GAGTC 1 cut(s) 674
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 3 cut(s) 368, 404, 452
SfcI CTRYAG 1 cut(s) 840
Sfr303I CCGCGG 1 cut(s) 290
SfuI TTCGAA 3 cut(s) 200, 220, 729
SgrBI CCGCGG 1 cut(s) 290
SinI GGWCC 2 cut(s) 76, 117
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 5 cut(s) 453, 473, 724, 792, 846
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 6 cut(s) 79, 261, 287, 289, 320, 549
SspMI CTAG 3 cut(s) 521, 774, 806
StuI AGGCCT 1 cut(s) 329
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 5 cut(s) 159, 167, 208, 736, 835
TaqI TCGA 6 cut(s) 144, 200, 220, 380, 555, 729
TaqII GACCGA 1 cut(s) 134
TasI AATT 5 cut(s) 453, 473, 724, 792, 846
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 217, 552
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TseFI GTSAC 2 cut(s) 167, 462
TseI GCWGC 3 cut(s) 41, 305, 839
Tsp45I GTSAC 2 cut(s) 167, 462
TspDTI ATGAA 6 cut(s) 17, 398, 432, 483, 611, 646
TspGWI ACGGA 2 cut(s) 339, 357
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 76, 117
XapI RAATTY 2 cut(s) 453, 473
XmnI GAANNNNTTC 2 cut(s) 150, 239
XspI CTAG 3 cut(s) 521, 774, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.