RLG00000024427
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003729
Physical Location & Seq
Reverse (-)
35734855 .. 35737632
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024427

Sequence Viewer

Length: 825 bp
ATGTCCTCCGATACCTCCGGTAAGAAGGTCCGGAAGCCTTACACCATCACCAAGTCCAGAGAGAGCTGGACCGAGGAAGAGCACGACAAGTTCCTTGAAGCTCTTCAACTGTTTGATCGTGACTGGAAGAAAATTGAAGATTTTGTGGGTTCTAAAACGGTTATTCAGATTCGAAGTCATGCACAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAACAGCACATGTGCCTCCTCCTCGGCCAAAGCGCAAGGCTTCTCATCCTTACCCGCAGAAGGCCTCCAAAAATGTTTTAATTCCCTTGCGAGCATCACTTGCTTATCCTTCTTCCATGAATGCCATTGCACCTGGCTATTGTCCTTGGGATGAAGCTTCGATTTTCTTAAATGCTGGATCAGACCAAATTGTGTTGTCACACGAAGAATTTATTAATCGTCAAGGAACGGAAGCTGATATTGGATCAAAGGGGTTAGCAAGAATTAGTACATGCGATCCTAGTGGTATCGCAAGCTCAAGTAGAACCCTACCTAGTTCCGAGATACCAAAGCAAGGGTCACAAGCTCCTGTCAGCCATGGTATTCCTGATTTTGCCGAAGTTTATAGCTTCATTGGAGGTGTTTTTGATCCGGACACCCAAGGCCATGCTCAGAAACTCAAGGAAATGGATCCCATTAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCAGCATCAACTTGTCCAGCCCAGATTTTGAACCGATTAGGAAGTATATACAGTTGCTGACTGGTATGGTCCTGGAGAAAAAGTATGGTGGTTCTAGAACAGCAGGCCGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.45

Weight (kDa)

9.16

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 65 1.1e-12 Myb-like DNA-binding domain
RVE6 PF24904 194 - 253 9.7e-33 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 30, 628
AciI CCGC 1 cut(s) 272
AclWI GGATC 6 cut(s) 403, 469, 488, 620, 662, 675
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 2 cut(s) 191, 487
AfiI CCNNNNNNNGG 2 cut(s) 277, 551
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 7 cut(s) 98, 107, 137, 199, 206, 683, 740
AjnI CCWGG 2 cut(s) 349, 780
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 7 cut(s) 66, 101, 374, 452, 513, 563, 606
AluI AGCT 7 cut(s) 66, 101, 374, 452, 513, 563, 606
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 6 cut(s) 403, 469, 488, 620, 662, 675
AlwNI CAGNNNCTG 1 cut(s) 766
Aor13HI TCCGGA 2 cut(s) 30, 628
AoxI GGCC 4 cut(s) 242, 279, 640, 814
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AseI ATTAAT 2 cut(s) 432, 675
Asp700I GAANNNNTTC 2 cut(s) 102, 191
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 28, 69, 778
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 3 cut(s) 28, 69, 778
BamHI GGATCC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 710
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 351, 782
BfaI CTAG 3 cut(s) 498, 531, 804
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 351, 782
Bme18I GGWCC 3 cut(s) 28, 69, 778
BmgT120I GGNCC 3 cut(s) 28, 69, 778
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 2 cut(s) 351, 782
BmsI GCATC 2 cut(s) 320, 723
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 710
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 2 cut(s) 499, 641
BsaJI CCNNGG 5 cut(s) 72, 239, 362, 574, 637
BsaWI WCCGGW 3 cut(s) 17, 30, 628
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 551
Bse1I ACTGG 2 cut(s) 128, 775
Bse3DI GCAATG 1 cut(s) 342
BseAI TCCGGA 2 cut(s) 30, 628
BseBI CCWGG 2 cut(s) 351, 782
BseDI CCNNGG 5 cut(s) 72, 239, 362, 574, 637
BseGI GGATG 2 cut(s) 262, 373
BseLI CCNNNNNNNGG 2 cut(s) 277, 551
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 662, 724
BseNI ACTGG 2 cut(s) 128, 775
BseRI GAGGAG 2 cut(s) 225, 228
BshFI GGCC 4 cut(s) 244, 281, 642, 816
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 3 cut(s) 18, 31, 629
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 277, 551
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 4 cut(s) 244, 281, 642, 816
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 2 cut(s) 30, 628
Bsp143I GATC 6 cut(s) 115, 395, 461, 493, 625, 667
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 1 cut(s) 272
BspANI GGCC 4 cut(s) 244, 281, 642, 816
BspCNI CTCAG 2 cut(s) 661, 723
BspEI TCCGGA 2 cut(s) 30, 628
BspLI GGNNCC 1 cut(s) 669
BspPI GGATC 6 cut(s) 403, 469, 488, 620, 662, 675
BspQI GCTCTTC 2 cut(s) 72, 108
BspT104I TTCGAA 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 128, 775
BssECI CCNNGG 5 cut(s) 72, 239, 362, 574, 637
BssMI GATC 6 cut(s) 115, 395, 461, 493, 625, 667
BssT1I CCWWGG 3 cut(s) 362, 574, 637
Bst2UI CCWGG 2 cut(s) 351, 782
Bst4CI ACNGT 4 cut(s) 111, 160, 688, 762
Bst6I CTCTTC 2 cut(s) 72, 108
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 309, 511, 814
BstDEI CTNAG 2 cut(s) 648, 710
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 2 cut(s) 262, 373
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 6 cut(s) 118, 398, 464, 496, 628, 670
BstMBI GATC 6 cut(s) 115, 395, 461, 493, 625, 667
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 351, 782
BstNSI RCATGY 2 cut(s) 230, 492
BstSCI CCNGG 2 cut(s) 349, 780
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 4 cut(s) 244, 281, 642, 816
BtgI CCRYGG 1 cut(s) 574
BtsCI GGATG 2 cut(s) 262, 373
Cac8I GCNNGC 3 cut(s) 309, 511, 814
CaiI CAGNNNCTG 1 cut(s) 766
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 28, 69, 778
Csp6I GTAC 2 cut(s) 190, 486
CviAII CATG 6 cut(s) 179, 227, 334, 489, 575, 644
CviQI GTAC 2 cut(s) 190, 486
DdeI CTNAG 2 cut(s) 648, 710
DpnI GATC 6 cut(s) 117, 397, 463, 495, 627, 669
DpnII GATC 6 cut(s) 115, 395, 461, 493, 625, 667
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 72, 108
EarI CTCTTC 2 cut(s) 72, 108
Eco130I CCWWGG 3 cut(s) 362, 574, 637
Eco147I AGGCCT 1 cut(s) 281
Eco47I GGWCC 3 cut(s) 28, 69, 778
EcoRII CCWGG 2 cut(s) 349, 780
EcoT14I CCWWGG 3 cut(s) 362, 574, 637
ErhI CCWWGG 3 cut(s) 362, 574, 637
FaeI CATG 6 cut(s) 182, 230, 337, 492, 578, 647
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 178, 226, 333, 488, 574, 643
FauI CCCGC 1 cut(s) 279
FokI GGATG 2 cut(s) 249, 380
FspBI CTAG 3 cut(s) 498, 531, 804
GlaI GCGC 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 803
HaeIII GGCC 4 cut(s) 244, 281, 642, 816
HapII CCGG 3 cut(s) 18, 31, 629
HhaI GCGC 1 cut(s) 252
Hin1II CATG 6 cut(s) 182, 230, 337, 492, 578, 647
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 169, 819
HpaII CCGG 3 cut(s) 18, 31, 629
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 6 cut(s) 10, 168, 400, 538, 651, 824
Hpy188III TCNNGA 7 cut(s) 31, 57, 119, 196, 584, 629, 804
HpyAV CCTTC 3 cut(s) 19, 271, 336
HpyCH4III ACNGT 4 cut(s) 111, 160, 688, 762
HpyCH4V TGCA 2 cut(s) 182, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 648, 710
Hsp92II CATG 6 cut(s) 182, 230, 337, 492, 578, 647
HspAI GCGC 1 cut(s) 250
Kpn2I TCCGGA 2 cut(s) 30, 628
Kzo9I GATC 6 cut(s) 115, 395, 461, 493, 625, 667
LguI GCTCTTC 2 cut(s) 72, 108
LmnI GCTCC 1 cut(s) 568
LweI GCATC 2 cut(s) 320, 723
MaeI CTAG 3 cut(s) 498, 531, 804
MaeIII GTNAC 3 cut(s) 119, 414, 555
MalI GATC 6 cut(s) 117, 397, 463, 495, 627, 669
MboI GATC 6 cut(s) 115, 395, 461, 493, 625, 667
MboII GAAGA 6 cut(s) 89, 95, 139, 149, 321, 434
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 132, 297, 405, 425, 480, 676
MnlI CCTC 9 cut(s) 16, 25, 67, 243, 246, 249, 292, 608, 719
MroI TCCGGA 2 cut(s) 30, 628
MroXI GAANNNNTTC 2 cut(s) 102, 191
MseI TTAA 4 cut(s) 296, 386, 432, 675
MspI CCGG 3 cut(s) 18, 31, 629
MspR9I CCNGG 2 cut(s) 351, 782
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 2 cut(s) 351, 782
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 574
NdeII GATC 6 cut(s) 115, 395, 461, 493, 625, 667
NlaIII CATG 6 cut(s) 182, 230, 337, 492, 578, 647
NlaIV GGNNCC 1 cut(s) 669
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 3 cut(s) 119, 414, 555
NspI RCATGY 2 cut(s) 230, 492
NspV TTCGAA 1 cut(s) 172
PceI AGGCCT 1 cut(s) 281
PciI ACATGT 1 cut(s) 226
PciSI GCTCTTC 2 cut(s) 72, 108
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 2 cut(s) 102, 191
PfeI GAWTC 2 cut(s) 169, 819
PfoI TCCNGGA 1 cut(s) 780
PscI ACATGT 1 cut(s) 226
PshBI ATTAAT 2 cut(s) 432, 675
Psp6I CCWGG 2 cut(s) 349, 780
PspGI CCWGG 2 cut(s) 349, 780
PspN4I GGNNCC 1 cut(s) 669
PspPI GGNCC 3 cut(s) 28, 69, 778
PstNI CAGNNNCTG 1 cut(s) 766
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 2 cut(s) 191, 487
RsaNI GTAC 2 cut(s) 190, 486
SapI GCTCTTC 2 cut(s) 72, 108
SaqAI TTAA 4 cut(s) 296, 386, 432, 675
Sau3AI GATC 6 cut(s) 115, 395, 461, 493, 625, 667
Sau96I GGNCC 3 cut(s) 28, 69, 778
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 351, 782
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 320, 723
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 3 cut(s) 28, 69, 778
SmlI CTYRAG 2 cut(s) 514, 656
SmoI CTYRAG 2 cut(s) 514, 656
Sse9I AATT 6 cut(s) 132, 297, 405, 425, 480, 676
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 1 cut(s) 272
SspMI CTAG 3 cut(s) 498, 531, 804
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 349, 780
StyI CCWWGG 3 cut(s) 362, 574, 637
TaaI ACNGT 4 cut(s) 111, 160, 688, 762
TaqI TCGA 2 cut(s) 172, 377
TaqII GACCGA 1 cut(s) 86
TasI AATT 6 cut(s) 132, 297, 405, 425, 480, 676
TatI WGTACW 2 cut(s) 189, 485
TfiI GAWTC 2 cut(s) 169, 819
Tru1I TTAA 4 cut(s) 296, 386, 432, 675
Tru9I TTAA 4 cut(s) 296, 386, 432, 675
TseFI GTSAC 3 cut(s) 119, 414, 555
Tsp45I GTSAC 3 cut(s) 119, 414, 555
TspDTI ATGAA 3 cut(s) 350, 384, 598
TspGWI ACGGA 1 cut(s) 461
VpaK11BI GGWCC 3 cut(s) 28, 69, 778
VspI ATTAAT 2 cut(s) 432, 675
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 2 cut(s) 230, 492
XmnI GAANNNNTTC 2 cut(s) 102, 191
XspI CTAG 3 cut(s) 498, 531, 804
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.