pycom12g12430
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003729
Physical Location & Seq
Reverse (-)
14890946 .. 14893461
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g12430.2

Sequence Viewer

Length: 717 bp
ATGAACTCCACTGCCTCCACCAACCCCCAATCGTCAATGGGCACAGTGTCGACGCCGTCCTCAGACGGGTCGGGAAAGAAGGTCCGGAAGCCATACACCATCACCAAGTCCAGAGAAAGCTGGACCGACGAAGAGCACGACAAGTTCCTCGAAGCTCTTCAACTGTTTGATAGAGACTGGAAGAAAATCGAAGATTTTGTAGGTTCGAAAACGGTTATTCAGATTAGGAGTCACGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAGCGGGACAACGGCGCACGTGCCTCCTCCACGGCCAAAGCGCAAGGCTACTCATCCTTACCCTCAAAAGGCCTCCAAAAATGGTTTACTTCCGTTGCAAGCATCCATTGCTTATCCATCTTCAATGAACGCAATTGCATCTACCTATTCTCCTTGGGATGAAACTTCCATTTTGACAAACCCTGCATCGGACCAAATTCTGTTGTCACGCGAAGAATTTACTAATCTTCATGGAACTGAAGGTCTTCCTGATTTTGCCGAAGTTTATAGCTTCATCGGGAGTGTTTTTGATCCAGAAACAAAAGGTCATGCTCAGAAACTCAGGGAAATGAATCCCATTAATTTTGAAACTGTTCTGTTGTTAATGAGGAATCTCAGCATCAACTTGTCCAGTCCGGACTTTGAGCAAATGAGGAAGGTCCTGTTATCATATGATGTCCTACGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

239

Amino Acids

26.81

Weight (kDa)

9.12

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 474
AccIII TCCGGA 2 cut(s) 84, 658
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 2 cut(s) 459, 479
AcuI CTGAAG 1 cut(s) 522
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 66, 331, 451
AgsI TTSAA 5 cut(s) 161, 253, 260, 387, 611
AluBI AGCT 3 cut(s) 120, 155, 534
AluI AGCT 3 cut(s) 120, 155, 534
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 548
Aor13HI TCCGGA 2 cut(s) 84, 658
AoxI GGCC 2 cut(s) 296, 333
ApoI RAATTY 2 cut(s) 459, 479
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 4 cut(s) 156, 245, 507, 615
AspLEI GCGC 2 cut(s) 280, 306
AspS9I GGNCC 4 cut(s) 82, 123, 454, 682
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 4 cut(s) 82, 123, 454, 682
BaeGI GKGCMC 1 cut(s) 44
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 2 cut(s) 107, 388
BceAI ACGGC 3 cut(s) 40, 291, 311
BcoDI GTCTC 1 cut(s) 168
BmcAI AGTACT 1 cut(s) 245
Bme18I GGWCC 4 cut(s) 82, 123, 454, 682
BmgT120I GGNCC 4 cut(s) 82, 123, 454, 682
BmsI GCATC 4 cut(s) 374, 410, 458, 651
BpiI GAAGAC 1 cut(s) 500
Bpu14I TTCGAA 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 293, 416
BsaWI WCCGGW 2 cut(s) 84, 658
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 331, 451
Bse1I ACTGG 2 cut(s) 182, 654
Bse3DI GCAATG 1 cut(s) 369
BseAI TCCGGA 2 cut(s) 84, 658
BseDI CCNNGG 2 cut(s) 293, 416
BseGI GGATG 3 cut(s) 316, 365, 427
BseLI CCNNNNNNNGG 3 cut(s) 66, 331, 451
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 4 cut(s) 75, 590, 598, 652
BseNI ACTGG 2 cut(s) 182, 654
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 298, 335
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 85, 659
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 66, 331, 451
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 2 cut(s) 298, 335
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 44, 138
Bsp13I TCCGGA 2 cut(s) 84, 658
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 298, 335
BspCNI CTCAG 4 cut(s) 74, 589, 597, 651
BspEI TCCGGA 2 cut(s) 84, 658
BspFNI CGCG 1 cut(s) 474
BspPI GGATC 1 cut(s) 548
BspQI GCTCTTC 2 cut(s) 126, 162
BspT104I TTCGAA 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 182, 654
BssECI CCNNGG 2 cut(s) 293, 416
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 5 cut(s) 46, 165, 214, 616, 714
Bst6I CTCTTC 2 cut(s) 126, 162
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 4 cut(s) 61, 576, 584, 638
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 3 cut(s) 316, 365, 427
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 280, 306
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 44
BstUI CGCG 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 500
BsuRI GGCC 2 cut(s) 298, 335
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 3 cut(s) 316, 365, 427
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 51
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 2 cut(s) 280, 306
Cfr13I GGNCC 4 cut(s) 82, 123, 454, 682
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 494, 572
CviJI RGCY 7 cut(s) 91, 120, 155, 298, 311, 335, 534
CviKI_1 RGCY 7 cut(s) 91, 120, 155, 298, 311, 335, 534
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 4 cut(s) 61, 576, 584, 638
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 126, 162
EarI CTCTTC 2 cut(s) 126, 162
Eco130I CCWWGG 1 cut(s) 416
Eco147I AGGCCT 1 cut(s) 335
Eco47I GGWCC 4 cut(s) 82, 123, 454, 682
Eco57I CTGAAG 1 cut(s) 522
Eco72I CACGTG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 2 cut(s) 497, 575
FaiI YATR 6 cut(s) 94, 495, 531, 573, 694, 696
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 493, 571
FauI CCCGC 1 cut(s) 260
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 1 cut(s) 50
FokI GGATG 3 cut(s) 303, 352, 434
GlaI GCGC 2 cut(s) 279, 305
HaeIII GGCC 2 cut(s) 298, 335
HapII CCGG 2 cut(s) 85, 659
HgaI GACGC 1 cut(s) 61
HhaI GCGC 2 cut(s) 280, 306
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 497, 575
Hin6I GCGC 2 cut(s) 278, 304
HinP1I GCGC 2 cut(s) 278, 304
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 3 cut(s) 229, 595, 634
HpaII CCGG 2 cut(s) 85, 659
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 51, 350
Hpy188I TCNGA 4 cut(s) 64, 222, 454, 579
Hpy188III TCNNGA 8 cut(s) 72, 85, 111, 250, 512, 541, 557, 659
Hpy8I GTNNAC 2 cut(s) 51, 350
Hpy99I CGWCG 2 cut(s) 55, 131
HpyAV CCTTC 3 cut(s) 73, 497, 673
HpyCH4III ACNGT 5 cut(s) 46, 165, 214, 616, 714
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 361, 401, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 61, 576, 584, 638
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 497, 575
HspAI GCGC 2 cut(s) 278, 304
Kpn2I TCCGGA 2 cut(s) 84, 658
Kzo9I GATC 1 cut(s) 553
LguI GCTCTTC 2 cut(s) 126, 162
LweI GCATC 4 cut(s) 374, 410, 458, 651
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 230, 468
MalI GATC 1 cut(s) 555
MbiI CCGCTC 1 cut(s) 267
MboI GATC 1 cut(s) 553
MboII GAAGA 8 cut(s) 143, 149, 193, 203, 375, 482, 488, 500
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 44, 138
MluCI AATT 4 cut(s) 396, 459, 479, 604
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 9 cut(s) 25, 70, 158, 297, 300, 336, 346, 624, 669
MroI TCCGGA 2 cut(s) 84, 658
MroXI GAANNNNTTC 4 cut(s) 156, 245, 507, 615
MseI TTAA 2 cut(s) 603, 626
MspI CCGG 2 cut(s) 85, 659
MunI CAATTG 1 cut(s) 396
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeI CATATG 1 cut(s) 694
NdeII GATC 1 cut(s) 553
NlaIII CATG 2 cut(s) 497, 575
NmuCI GTSAC 2 cut(s) 230, 468
NspV TTCGAA 1 cut(s) 206
PceI AGGCCT 1 cut(s) 335
PciSI GCTCTTC 2 cut(s) 126, 162
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 4 cut(s) 156, 245, 507, 615
PfeI GAWTC 2 cut(s) 595, 634
PflFI GACNNNGTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
PpsI GAGTC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 682
PspCI CACGTG 1 cut(s) 283
PspPI GGNCC 4 cut(s) 82, 123, 454, 682
PspPPI RGGWCCY 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 49
SapI GCTCTTC 2 cut(s) 126, 162
SaqAI TTAA 2 cut(s) 603, 626
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 4 cut(s) 82, 123, 454, 682
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 2 cut(s) 44, 138
SfaNI GCATC 4 cut(s) 374, 410, 458, 651
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 4 cut(s) 82, 123, 454, 682
Sse9I AATT 4 cut(s) 396, 459, 479, 604
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 335
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 5 cut(s) 46, 165, 214, 616, 714
TaiI ACGT 1 cut(s) 285
TaqI TCGA 4 cut(s) 50, 150, 189, 206
TaqII GACCGA 1 cut(s) 140
TasI AATT 4 cut(s) 396, 459, 479, 604
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 595, 634
Tru1I TTAA 2 cut(s) 603, 626
Tru9I TTAA 2 cut(s) 603, 626
TscAI CASTG 2 cut(s) 16, 51
TseFI GTSAC 2 cut(s) 230, 468
Tsp45I GTSAC 2 cut(s) 230, 468
TspDTI ATGAA 6 cut(s) 17, 404, 438, 482, 526, 608
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 16, 51
Tth111I GACNNNGTC 1 cut(s) 55
VpaK11BI GGWCC 4 cut(s) 82, 123, 454, 682
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 459, 479
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 4 cut(s) 156, 245, 507, 615
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.