FvH4_6g15160
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003729
Physical Location & Seq
Forward (+)
9412748 .. 9416048
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15160.t1

Sequence Viewer

Length: 864 bp
ATGATCAATTCCAATCACCAATCCATGTCGTCCTCCGACGGGTCGGGTAAGAAGGTCCGGAAGCCCTACACCATCACCAAGTCCAGAGAGAGCTGGACCGAAGAAGAGCACGACAAGTTCCTCGAGGCTCTTCAACTGTTTGATCGTGACTGGAAGAAAATTGAAGATTTTGTGGGTTCTAAGACGGTTATTCAGATTAGAAGTCATGCACAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAACAGCGCATGTGCCTCCTCCTCGGCCAAAGCGCAAGGCTTCGCATCCTTACCCGCAGAAGGCCTCTAAAAATGAATTTATTCCCTTCCAAGCATCACTTGCTTATCCTTCTTCCATGAATGCCATTGCATCTGGCTATTGTCCTTGGGATGAAGCTTCAATTTTCTTAAATGCTGGACCAGACCAAATTGTGTTGTCACACGAAGAATTTATTAATCGTCAAGCAGCGGAAGCTGGTATTGGATCAAAGGGGGTGGCGAGAATTAGTAAATGTGATCCTAGTGGGATCGGAAGCTCAAGTAGAACCCTACCTAGTTCCGAGATAACAAAGCAAGGGTCACAAGCTCATGTGCGCCATGGTCTTCCAGATTTTGCCGAAGTTTATAGCTTCATTGGAGATGTTTTTGATCCAGACACCCAAGGCCATGCTCAGAAACTCAAGGAAATGGATCCCATCAATTTCGAAACTGTTTTGTTGGTAATGAGAAACCTCAGCATCAACTTGGCTAGCCCAGATTTTGAACCAATTAGGAAGGTCCTGGTATCAAATGATGCCAGTATGAAAACGGCAGCTGCAGGAAATATTCCCGGTTACCAAAATAGCGATCTTTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

31.71

Weight (kDa)

8.31

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 74 1.2e-12 Myb-like DNA-binding domain
RVE6 PF24904 203 - 263 3.1e-32 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 57
AciI CCGC 2 cut(s) 299, 473
AclWI GGATC 6 cut(s) 496, 515, 539, 647, 689, 702
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 320, 452
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 39, 304
AgsI TTSAA 6 cut(s) 134, 164, 226, 233, 405, 767
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AluBI AGCT 7 cut(s) 93, 401, 479, 540, 590, 633, 818
AluI AGCT 7 cut(s) 93, 401, 479, 540, 590, 633, 818
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 6 cut(s) 496, 515, 539, 647, 689, 702
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 57
AoxI GGCC 3 cut(s) 269, 306, 667
ApeKI GCWGC 3 cut(s) 470, 815, 818
ApoI RAATTY 2 cut(s) 320, 452
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AseI ATTAAT 1 cut(s) 459
Asp700I GAANNNNTTC 2 cut(s) 218, 324
AspLEI GCGC 3 cut(s) 253, 279, 600
AspS9I GGNCC 4 cut(s) 55, 96, 422, 781
AsuC2I CCSGG 1 cut(s) 834
AsuHPI GGTGA 2 cut(s) 8, 67
AsuII TTCGAA 1 cut(s) 708
AsuNHI GCTAGC 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 4 cut(s) 55, 96, 422, 781
BamHI GGATCC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 482, 805, 827
BccI CCATC 2 cut(s) 80, 707
BceAI ACGGC 1 cut(s) 828
BciT130I CCWGG 1 cut(s) 785
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 834
BfaI CTAG 3 cut(s) 525, 558, 753
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 3 cut(s) 471, 816, 819
BlsI GCNGC 3 cut(s) 472, 817, 820
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 785, 834
Bme18I GGWCC 4 cut(s) 55, 96, 422, 781
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 4 cut(s) 55, 96, 422, 781
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 785, 834
BmsI GCATC 5 cut(s) 298, 347, 383, 750, 787
BmtI GCTAGC 1 cut(s) 756
BpiI GAAGAC 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 526, 668
BpuMI CCSGG 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 266, 389, 601, 664
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 304
Bse1I ACTGG 2 cut(s) 155, 801
Bse3DI GCAATG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 57
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 4 cut(s) 266, 389, 601, 664
BseGI GGATG 2 cut(s) 289, 400
BseLI CCNNNNNNNGG 2 cut(s) 39, 304
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 689, 751
BseNI ACTGG 2 cut(s) 155, 801
BseRI GAGGAG 2 cut(s) 252, 255
BseXI GCAGC 3 cut(s) 482, 805, 827
BshFI GGCC 3 cut(s) 271, 308, 669
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 58, 834
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 39, 304
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 271, 308, 669
BsoBI CYCGRG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 57
Bsp143I GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 2 cut(s) 299, 473
BspANI GGCC 3 cut(s) 271, 308, 669
BspCNI CTCAG 2 cut(s) 688, 750
BspEI TCCGGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 696
BspMAI CTGCAG 1 cut(s) 823
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 6 cut(s) 496, 515, 539, 647, 689, 702
BspQI GCTCTTC 2 cut(s) 99, 135
BspT104I TTCGAA 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 155, 801
BssECI CCNNGG 4 cut(s) 266, 389, 601, 664
BssMI GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
BssT1I CCWWGG 3 cut(s) 389, 601, 664
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 138, 187, 715
Bst6I CTCTTC 2 cut(s) 99, 135
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 3 cut(s) 180, 675, 737
BstDSI CCRYGG 1 cut(s) 601
BstEII GGTNACC 1 cut(s) 836
BstF5I GGATG 2 cut(s) 289, 400
BstHHI GCGC 3 cut(s) 253, 279, 600
BstKTI GATC 8 cut(s) 6, 145, 491, 523, 534, 655, 697, 853
BstMBI GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
BstMWI GCNNNNNNNGC 2 cut(s) 344, 476
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 836
BstSCI CCNGG 2 cut(s) 783, 832
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 3 cut(s) 482, 805, 827
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 3 cut(s) 271, 308, 669
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 2 cut(s) 289, 400
Cac8I GCNNGC 1 cut(s) 754
CfoI GCGC 3 cut(s) 253, 279, 600
Cfr13I GGNCC 4 cut(s) 55, 96, 422, 781
Csp6I GTAC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 8 cut(s) 25, 206, 254, 361, 593, 602, 671, 858
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 180, 675, 737
DpnI GATC 8 cut(s) 5, 144, 490, 522, 533, 654, 696, 852
DpnII GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 99, 135
EarI CTCTTC 2 cut(s) 99, 135
Eco130I CCWWGG 3 cut(s) 389, 601, 664
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 4 cut(s) 55, 96, 422, 781
Eco88I CYCGRG 1 cut(s) 122
Eco91I GGTNACC 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 781
EcoO65I GGTNACC 1 cut(s) 836
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 3 cut(s) 389, 601, 664
ErhI CCWWGG 3 cut(s) 389, 601, 664
FaeI CATG 8 cut(s) 28, 209, 257, 364, 596, 605, 674, 861
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 327, 359
FaqI GGGAC 1 cut(s) 256
FatI CATG 8 cut(s) 24, 205, 253, 360, 592, 601, 670, 857
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 471, 816, 819
FokI GGATG 2 cut(s) 276, 407
Fsp4HI GCNGC 3 cut(s) 471, 816, 819
FspBI CTAG 3 cut(s) 525, 558, 753
GlaI GCGC 3 cut(s) 252, 278, 599
GluI GCNGC 3 cut(s) 471, 816, 819
HaeIII GGCC 3 cut(s) 271, 308, 669
HapII CCGG 2 cut(s) 58, 834
HhaI GCGC 3 cut(s) 253, 279, 600
Hin1II CATG 8 cut(s) 28, 209, 257, 364, 596, 605, 674, 861
Hin6I GCGC 3 cut(s) 251, 277, 598
HinP1I GCGC 3 cut(s) 251, 277, 598
HindIII AAGCTT 1 cut(s) 399
HpaII CCGG 2 cut(s) 58, 834
HphI GGTGA 2 cut(s) 8, 67
Hpy188I TCNGA 5 cut(s) 37, 195, 536, 565, 678
Hpy188III TCNNGA 6 cut(s) 58, 84, 146, 223, 611, 656
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 5 cut(s) 46, 298, 340, 363, 772
HpyCH4III ACNGT 3 cut(s) 138, 187, 715
HpyCH4V TGCA 3 cut(s) 209, 374, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 476
HpyF3I CTNAG 3 cut(s) 180, 675, 737
Hsp92II CATG 8 cut(s) 28, 209, 257, 364, 596, 605, 674, 861
HspAI GCGC 3 cut(s) 251, 277, 598
Kpn2I TCCGGA 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
LguI GCTCTTC 2 cut(s) 99, 135
Lsp1109I GCAGC 3 cut(s) 482, 805, 827
LweI GCATC 5 cut(s) 298, 347, 383, 750, 787
MaeI CTAG 3 cut(s) 525, 558, 753
MaeIII GTNAC 4 cut(s) 146, 441, 582, 836
MalI GATC 8 cut(s) 5, 144, 490, 522, 533, 654, 696, 852
MboI GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
MboII GAAGA 8 cut(s) 113, 116, 122, 166, 176, 348, 461, 599
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 9 cut(s) 7, 159, 320, 405, 432, 452, 507, 703, 771
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 8 cut(s) 43, 118, 131, 270, 273, 276, 319, 746
MroI TCCGGA 1 cut(s) 57
MroXI GAANNNNTTC 2 cut(s) 218, 324
MseI TTAA 2 cut(s) 413, 459
MspA1I CMGCKG 2 cut(s) 473, 818
MspI CCGG 2 cut(s) 58, 834
MspR9I CCNGG 2 cut(s) 785, 834
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 2 cut(s) 344, 476
NciI CCSGG 1 cut(s) 834
NcoI CCATGG 1 cut(s) 601
NdeII GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 8 cut(s) 28, 209, 257, 364, 596, 605, 674, 861
NlaIV GGNNCC 1 cut(s) 696
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 3 cut(s) 146, 441, 582
NspI RCATGY 1 cut(s) 257
NspV TTCGAA 1 cut(s) 708
PaeR7I CTCGAG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 308
PciSI GCTCTTC 2 cut(s) 99, 135
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 2 cut(s) 218, 324
PkrI GCNGC 3 cut(s) 472, 817, 820
PpuMI RGGWCCY 1 cut(s) 781
PshBI ATTAAT 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 783
PspEI GGTNACC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 4 cut(s) 55, 96, 422, 781
PspPPI RGGWCCY 1 cut(s) 781
PspXI VCTCGAGB 1 cut(s) 122
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 694
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SapI GCTCTTC 2 cut(s) 99, 135
SaqAI TTAA 2 cut(s) 413, 459
SatI GCNGC 3 cut(s) 471, 816, 819
Sau3AI GATC 8 cut(s) 3, 142, 488, 520, 531, 652, 694, 850
Sau96I GGNCC 4 cut(s) 55, 96, 422, 781
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 785, 834
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 5 cut(s) 298, 347, 383, 750, 787
SfcI CTRYAG 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 122
SfuI TTCGAA 1 cut(s) 708
SinI GGWCC 4 cut(s) 55, 96, 422, 781
SlaI CTCGAG 1 cut(s) 122
SmlI CTYRAG 3 cut(s) 122, 541, 683
SmoI CTYRAG 3 cut(s) 122, 541, 683
Sse9I AATT 9 cut(s) 7, 159, 320, 405, 432, 452, 507, 703, 771
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 2 cut(s) 299, 473
SspI AATATT 1 cut(s) 829
SspMI CTAG 3 cut(s) 525, 558, 753
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 783, 832
StyI CCWWGG 3 cut(s) 389, 601, 664
TaaI ACNGT 3 cut(s) 138, 187, 715
TaqI TCGA 2 cut(s) 123, 708
TaqII GACCGA 1 cut(s) 113
TasI AATT 9 cut(s) 7, 159, 320, 405, 432, 452, 507, 703, 771
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 2 cut(s) 413, 459
Tru9I TTAA 2 cut(s) 413, 459
TseFI GTSAC 3 cut(s) 146, 441, 582
TseI GCWGC 3 cut(s) 470, 815, 818
Tsp45I GTSAC 3 cut(s) 146, 441, 582
TspDTI ATGAA 6 cut(s) 333, 377, 411, 625, 821, 846
VpaK11BI GGWCC 4 cut(s) 55, 96, 422, 781
VspI ATTAAT 1 cut(s) 459
XapI RAATTY 2 cut(s) 320, 452
XceI RCATGY 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 122
XmnI GAANNNNTTC 2 cut(s) 218, 324
XspI CTAG 3 cut(s) 525, 558, 753
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.