MD12G1126100.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0003729
Physical Location & Seq
Reverse (-)
20146968 .. 20150056
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1126100.v1.1.491

Sequence Viewer

Length: 858 bp
ATGCACATTCATTCATTCAGTCACATGAACTCCACTGCCTCCACCAACCCCCAATCGTCAATGGGCACGGTGTTGAAGCCGTCCTCAGACGGGTCGGGGAAGAAGGTCCGGAAGCCATACACCATCACCAAGTCCAGAGAAAGCTGGACCGACGAAGAGCACGACAAGTTCCTCGAAGCTCTTCAACTGTCACTGTTGTTTGATAGAGACTGGAAGAAAATCGAAGATTTTGTAGGTTCGAAAACGGTTATTCAGATTAGGAGTCACGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAGCGGGACAACAGCACACGTGCCTCCTCCGCGGCCAAAGCGCAAGGCTGCTCATCCTTACCCGCAAAAGGCCTCCAAAAATGGTTTACTTCCGTTGCAAGCATCCATTGCTTATCCTTCTTCAATGAACGCAATTGCATCTACCTATTCTCCTTGGGATGAAACTTCCATTTTGACAAACCCTGCATCCGACCAAATTCTGTTGTCACATGAAGAATTTACTAATCTTCATGGAACTGAAGCTGACATTGGATCAAAGGGGTTATCAAGGATTAACACATGCAGTCTTAGTGGCCCCCTGCCAAGTTCCGAGATACCAAATCAAGGGAAACAAGCTCCTGGGCATCATGGTCTCCCTGATTTTGCCGAAGTTTATAGCTTCATCGGGAGTGTTTTTGATCCAGAAACAAAAGGTCATGCTCAGAAACTCAGGGAAATGAATCCCATTAATTTTGAAACTGTTCTGTTGTTAATGAGGAATCTCAGCTTCAACTTGTCCAGTCCGGACTTTGAGCCAATGAGGAAGGTCCTGGTATCACATGATGTCCTACGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

286

Amino Acids

31.7

Weight (kDa)

9.14

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 46 - 94 9.7e-10 Myb-like DNA-binding domain
RVE6 PF24904 217 - 278 1.1e-32 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 1 cut(s) 328
AccIII TCCGGA 2 cut(s) 108, 799
AciI CCGC 4 cut(s) 300, 326, 328, 359
AclWI GGATC 2 cut(s) 556, 689
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 2 cut(s) 492, 512
AcuI CTGAAG 1 cut(s) 555
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 90, 364, 620
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 7 cut(s) 76, 185, 286, 293, 420, 752, 787
AjnI CCWGG 2 cut(s) 634, 825
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 6 cut(s) 144, 179, 539, 632, 675, 783
AluI AGCT 6 cut(s) 144, 179, 539, 632, 675, 783
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 201, 653
AlwI GGATC 2 cut(s) 556, 689
Aor13HI TCCGGA 2 cut(s) 108, 799
AoxI GGCC 3 cut(s) 329, 366, 589
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 492, 512
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 3 cut(s) 180, 278, 756
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 4 cut(s) 106, 147, 590, 823
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 239
AvaII GGWCC 3 cut(s) 106, 147, 823
BaeGI GKGCMC 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 636, 827
BcoDI GTCTC 2 cut(s) 201, 653
BisI GCNGC 2 cut(s) 329, 345
BlsI GCNGC 2 cut(s) 330, 346
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 636, 827
Bme18I GGWCC 3 cut(s) 106, 147, 823
BmgT120I GGNCC 4 cut(s) 106, 147, 590, 823
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 2 cut(s) 636, 827
BmsI GCATC 4 cut(s) 407, 443, 491, 649
Bpu14I TTCGAA 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 326, 449, 635
BsaWI WCCGGW 2 cut(s) 108, 799
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 364, 620
Bse1I ACTGG 2 cut(s) 215, 795
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 2 cut(s) 108, 799
BseBI CCWGG 2 cut(s) 636, 827
BseDI CCNNGG 3 cut(s) 326, 449, 635
BseGI GGATG 4 cut(s) 349, 398, 460, 482
BseLI CCNNNNNNNGG 3 cut(s) 90, 364, 620
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 99, 731, 739, 793
BseNI ACTGG 2 cut(s) 215, 795
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 3 cut(s) 331, 368, 591
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 2 cut(s) 109, 800
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 3 cut(s) 90, 364, 620
BsmAI GTCTC 2 cut(s) 201, 653
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 3 cut(s) 331, 368, 591
Bso31I GGTCTC 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 68, 162
Bsp13I TCCGGA 2 cut(s) 108, 799
Bsp143I GATC 2 cut(s) 548, 694
BspACI CCGC 4 cut(s) 300, 326, 328, 359
BspANI GGCC 3 cut(s) 331, 368, 591
BspCNI CTCAG 4 cut(s) 98, 730, 738, 792
BspEI TCCGGA 2 cut(s) 108, 799
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 592
BspPI GGATC 2 cut(s) 556, 689
BspQI GCTCTTC 2 cut(s) 150, 186
BspT104I TTCGAA 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 2 cut(s) 215, 795
BssECI CCNNGG 3 cut(s) 326, 449, 635
BssMI GATC 2 cut(s) 548, 694
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 2 cut(s) 636, 827
Bst4CI ACNGT 6 cut(s) 70, 189, 195, 247, 757, 855
Bst6I CTCTTC 2 cut(s) 150, 186
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 5 cut(s) 85, 584, 717, 725, 779
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 4 cut(s) 349, 398, 460, 482
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 2 cut(s) 551, 697
BstMAI GTCTC 2 cut(s) 201, 653
BstMBI GATC 2 cut(s) 548, 694
BstMWI GCNNNNNNNGC 3 cut(s) 325, 334, 404
BstNI CCWGG 2 cut(s) 636, 827
BstNSI RCATGY 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 634, 825
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 331
BsuRI GGCC 3 cut(s) 331, 368, 591
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 4 cut(s) 349, 398, 460, 482
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 191
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 4 cut(s) 106, 147, 590, 823
Cfr42I CCGCGG 1 cut(s) 329
Csp6I GTAC 1 cut(s) 277
CviAII CATG 7 cut(s) 25, 506, 527, 576, 644, 713, 836
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 5 cut(s) 85, 584, 717, 725, 779
DpnI GATC 2 cut(s) 550, 696
DpnII GATC 2 cut(s) 548, 694
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 2 cut(s) 150, 186
EarI CTCTTC 2 cut(s) 150, 186
Eco130I CCWWGG 1 cut(s) 449
Eco147I AGGCCT 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 653
Eco47I GGWCC 3 cut(s) 106, 147, 823
Eco57I CTGAAG 1 cut(s) 555
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 634, 825
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 7 cut(s) 28, 509, 530, 579, 647, 716, 839
FaiI YATR 9 cut(s) 26, 118, 507, 528, 577, 645, 672, 714, 837
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 316
FatI CATG 7 cut(s) 24, 505, 526, 575, 643, 712, 835
FauI CCCGC 2 cut(s) 293, 366
Fnu4HI GCNGC 2 cut(s) 329, 345
FokI GGATG 4 cut(s) 336, 385, 467, 469
Fsp4HI GCNGC 2 cut(s) 329, 345
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 329, 345
HaeIII GGCC 3 cut(s) 331, 368, 591
HapII CCGG 2 cut(s) 109, 800
HhaI GCGC 1 cut(s) 339
Hin1II CATG 7 cut(s) 28, 509, 530, 579, 647, 716, 839
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 3 cut(s) 262, 736, 775
HpaII CCGG 2 cut(s) 109, 800
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 5 cut(s) 88, 255, 487, 607, 720
Hpy188III TCNNGA 6 cut(s) 109, 135, 283, 682, 698, 800
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 97, 423, 814
HpyCH4III ACNGT 6 cut(s) 70, 189, 195, 247, 757, 855
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 4, 394, 434, 482, 579
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 334, 404
HpyF3I CTNAG 5 cut(s) 85, 584, 717, 725, 779
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 7 cut(s) 28, 509, 530, 579, 647, 716, 839
HspAI GCGC 1 cut(s) 337
Kpn2I TCCGGA 2 cut(s) 108, 799
KspI CCGCGG 1 cut(s) 329
Kzo9I GATC 2 cut(s) 548, 694
LguI GCTCTTC 2 cut(s) 150, 186
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 4 cut(s) 407, 443, 491, 649
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 20, 189, 263, 501
MalI GATC 2 cut(s) 550, 696
MbiI CCGCTC 1 cut(s) 300
MboI GATC 2 cut(s) 548, 694
MboII GAAGA 8 cut(s) 112, 167, 173, 226, 236, 408, 515, 521
MfeI CAATTG 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 68, 162
MluCI AATT 4 cut(s) 429, 492, 512, 745
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 8 cut(s) 49, 94, 182, 330, 333, 379, 765, 810
MroI TCCGGA 2 cut(s) 108, 799
MroXI GAANNNNTTC 3 cut(s) 180, 278, 756
MseI TTAA 3 cut(s) 570, 744, 767
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 2 cut(s) 109, 800
MspR9I CCNGG 2 cut(s) 636, 827
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 2 cut(s) 636, 827
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 325, 334, 404
NdeII GATC 2 cut(s) 548, 694
NlaIII CATG 7 cut(s) 28, 509, 530, 579, 647, 716, 839
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 4 cut(s) 20, 189, 263, 501
NspI RCATGY 1 cut(s) 579
NspV TTCGAA 1 cut(s) 239
PceI AGGCCT 1 cut(s) 368
PciSI GCTCTTC 2 cut(s) 150, 186
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 3 cut(s) 180, 278, 756
PfeI GAWTC 2 cut(s) 736, 775
PkrI GCNGC 2 cut(s) 330, 346
PleI GAGTC 1 cut(s) 270
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 1 cut(s) 270
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 634, 825
PspCI CACGTG 1 cut(s) 316
PspGI CCWGG 2 cut(s) 634, 825
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 4 cut(s) 106, 147, 590, 823
PspPPI RGGWCCY 1 cut(s) 823
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacII CCGCGG 1 cut(s) 329
SapI GCTCTTC 2 cut(s) 150, 186
SaqAI TTAA 3 cut(s) 570, 744, 767
SatI GCNGC 2 cut(s) 329, 345
Sau3AI GATC 2 cut(s) 548, 694
Sau96I GGNCC 4 cut(s) 106, 147, 590, 823
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 636, 827
SduI GDGCHC 2 cut(s) 68, 162
SfaNI GCATC 4 cut(s) 407, 443, 491, 649
Sfr303I CCGCGG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 329
SinI GGWCC 3 cut(s) 106, 147, 823
Sse9I AATT 4 cut(s) 429, 492, 512, 745
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 4 cut(s) 300, 326, 328, 359
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 634, 825
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 6 cut(s) 70, 189, 195, 247, 757, 855
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 174, 222, 239
TaqII GACCGA 1 cut(s) 164
TasI AATT 4 cut(s) 429, 492, 512, 745
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 736, 775
Tru1I TTAA 3 cut(s) 570, 744, 767
Tru9I TTAA 3 cut(s) 570, 744, 767
TscAI CASTG 2 cut(s) 40, 198
TseFI GTSAC 4 cut(s) 20, 189, 263, 501
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 4 cut(s) 20, 189, 263, 501
TspDTI ATGAA 7 cut(s) 41, 437, 471, 515, 522, 667, 749
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 40, 198
VpaK11BI GGWCC 3 cut(s) 106, 147, 823
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 2 cut(s) 492, 512
XceI RCATGY 1 cut(s) 579
XmnI GAANNNNTTC 3 cut(s) 180, 278, 756
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.