Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008735.1

Orthogroup ID

OG0003729

Physical Location & Seq

Genomic Coordinates Reverse (-)

25874 .. 27363

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008735.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggggtacgccgttactgattcagctgatattggatcaaagggggtagcaataattagtacatgcgatcctagtggtatcgcaagctcaagtagaaccctacctagttccgagataccaaagcaagggtcactagttcctgtcagccatggtattcctgattttgccgaagtttatagctttattggaggtgtttttgatccggacaccgaaggccatgctcagaaactcaaggaaatggatcccattaatttcgaaactgttttgttgttgatgagaaacctcagcatcaacttgtctagcccagattttgaaccaattaggaaggtcctagtttcaaatgatgccaatatgaaaacagcagctgcaggaaatactcccagttaccggaataacgatctttcatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

136

Amino Acids

14.42

Weight (kDa)

4.69

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT5G02840 AT5G02840 AT5G02840 AT5G02840 AT5G02840
fragaria_vesca	FvH4_6g15160 FvH4_6g15160 FvH4_6g15160
malus_domestica	MD12G1126100.v1.1
prunus_persica	Prupe.6G242700_v2.0.a1 Prupe.6G242700_v2.0.a1
pyrus_communis	pycom04g10070 pycom12g12430
rosa_chinensis	RchiOBHm_Chr3g0468461
rosa_laevigata	RLG00000024427
rosa_multiflora	Rmu_co8188524.1_g000001 Rmu_sc0008735.1_g000004 Rmu_sc0040156.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412740
rosa_rugosa	Rorug03G0095600
rosa_samantha	Rh3AG143400 Rh3AG143900 Rh3BG165900 Rh3DG165500
rosa_wichuraiana	Rw3G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	5 cut(s)	43, 62, 194, 236, 249
AfaI	GTAC	2 cut(s)	8, 61
AfiI	CCNNNNNNNGG	2 cut(s)	125, 387
AgsI	TTSAA	2 cut(s)	314, 339
AhlI	ACTAGT	1 cut(s)	133
AluBI	AGCT	4 cut(s)	26, 87, 180, 365
AluI	AGCT	4 cut(s)	26, 87, 180, 365
AlwI	GGATC	5 cut(s)	43, 62, 194, 236, 249
AlwNI	CAGNNNCTG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	362, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	352, 374
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	5 cut(s)	72, 105, 134, 300, 332
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	363, 366
BlsI	GCNGC	2 cut(s)	364, 367
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	297, 334
BmuI	ACTGGG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	73, 215
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	2 cut(s)	202, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 387
Bse1I	ACTGG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	125, 387
BseMII	CTCAG	2 cut(s)	236, 298
BseNI	ACTGG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	352, 374
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	203, 388
BslI	CCNNNNNNNGG	2 cut(s)	125, 387
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	35, 67, 199, 241, 397
Bsp19I	CCATGG	1 cut(s)	148
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	235, 297
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	5 cut(s)	43, 62, 194, 236, 249
BspT104I	TTCGAA	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	5 cut(s)	35, 67, 199, 241, 397
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	222, 284
BstDSI	CCRYGG	1 cut(s)	148
BstKTI	GATC	5 cut(s)	38, 70, 202, 244, 400
BstMBI	GATC	5 cut(s)	35, 67, 199, 241, 397
BstNSI	RCATGY	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	352, 374
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	7, 60
CviAII	CATG	4 cut(s)	63, 149, 218, 405
CviJI	RGCY	7 cut(s)	26, 87, 147, 180, 216, 303, 365
CviKI_1	RGCY	7 cut(s)	26, 87, 147, 180, 216, 303, 365
CviQI	GTAC	2 cut(s)	7, 60
DdeI	CTNAG	2 cut(s)	222, 284
DpnI	GATC	5 cut(s)	37, 69, 201, 243, 399
DpnII	GATC	5 cut(s)	35, 67, 199, 241, 397
Eco130I	CCWWGG	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	66, 152, 221, 408
FaiI	YATR	6 cut(s)	64, 150, 177, 219, 353, 406
FatI	CATG	4 cut(s)	62, 148, 217, 404
Fnu4HI	GCNGC	2 cut(s)	363, 366
Fsp4HI	GCNGC	2 cut(s)	363, 366
FspBI	CTAG	5 cut(s)	72, 105, 134, 300, 332
GluI	GCNGC	2 cut(s)	363, 366
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	203, 388
Hin1II	CATG	4 cut(s)	66, 152, 221, 408
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	203, 388
Hpy188I	TCNGA	2 cut(s)	112, 225
Hpy188III	TCNNGA	2 cut(s)	158, 203
HpyAV	CCTTC	2 cut(s)	206, 319
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	222, 284
Hsp92II	CATG	4 cut(s)	66, 152, 221, 408
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	35, 67, 199, 241, 397
LpnPI	CCDG	7 cut(s)	153, 171, 216, 318, 354, 394, 401
Lsp1109I	GCAGC	2 cut(s)	352, 374
LweI	GCATC	2 cut(s)	297, 334
MaeI	CTAG	5 cut(s)	72, 105, 134, 300, 332
MaeIII	GTNAC	3 cut(s)	13, 129, 383
MalI	GATC	5 cut(s)	37, 69, 201, 243, 399
MboI	GATC	5 cut(s)	35, 67, 199, 241, 397
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	3 cut(s)	54, 250, 318
MnlI	CCTC	2 cut(s)	182, 293
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	26, 365
MspI	CCGG	2 cut(s)	203, 388
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	5 cut(s)	35, 67, 199, 241, 397
NlaIII	CATG	4 cut(s)	66, 152, 221, 408
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	364, 367
PpuMI	RGGWCCY	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	328
PspPPI	RGGWCCY	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	26, 365
RsaI	GTAC	2 cut(s)	8, 61
RsaNI	GTAC	2 cut(s)	7, 60
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	363, 366
Sau3AI	GATC	5 cut(s)	35, 67, 199, 241, 397
Sau96I	GGNCC	1 cut(s)	328
SetI	ASST	8 cut(s)	28, 89, 106, 182, 193, 285, 330, 367
SfaNI	GCATC	2 cut(s)	297, 334
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	88, 230
SmoI	CTYRAG	2 cut(s)	88, 230
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	3 cut(s)	54, 250, 318
SspMI	CTAG	5 cut(s)	72, 105, 134, 300, 332
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	54, 250, 318
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	2 cut(s)	362, 365
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	368, 393
VpaK11BI	GGWCC	1 cut(s)	328
VspI	ATTAAT	1 cut(s)	249
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	5 cut(s)	72, 105, 134, 300, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.