Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8188524.1

Orthogroup ID

OG0003729

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 685

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8188524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

atgtcctccgacgcctccggtaagaaggtccggaagccttacaccatcaccaagtccagagagagctggaccgaggaagagcacgacaagttccttgaagctcttcaactgtttgatcgtgactggaagaaaattgaagattttgtgggttctaaaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

53

Amino Acids

6.28

Weight (kDa)

6.56

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT3G09600 AT5G02840 AT5G02840 AT5G02840 AT5G02840 AT5G02840
fragaria_vesca	FvH4_6g15160 FvH4_6g15160 FvH4_6g15160
malus_domestica	MD12G1126100.v1.1
prunus_persica	Prupe.6G242700_v2.0.a1 Prupe.6G242700_v2.0.a1
pyrus_communis	pycom04g10070 pycom12g12430
rosa_chinensis	RchiOBHm_Chr3g0468461
rosa_laevigata	RLG00000024427
rosa_multiflora	Rmu_co8188524.1_g000001 Rmu_sc0008735.1_g000004 Rmu_sc0040156.1_g000006
rosa_roxburghii	Rroxscaffold_6G00412740
rosa_rugosa	Rorug03G0095600
rosa_samantha	Rh3AG143400 Rh3AG143900 Rh3BG165900 Rh3DG165500
rosa_wichuraiana	Rw3G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	98, 107, 137
AluBI	AGCT	2 cut(s)	66, 101
AluI	AGCT	2 cut(s)	66, 101
Alw21I	GWGCWC	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	28, 69
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	28, 69
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	28, 69
BmgT120I	GGNCC	2 cut(s)	28, 69
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	17, 30
Bse1I	ACTGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	18, 31
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	30
BspQI	GCTCTTC	2 cut(s)	72, 108
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	72, 108
BstACI	GRCGYC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	28, 69
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	3 cut(s)	37, 66, 101
CviKI_1	RGCY	3 cut(s)	37, 66, 101
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	72, 108
EarI	CTCTTC	2 cut(s)	72, 108
Eco47I	GGWCC	2 cut(s)	28, 69
HapII	CCGG	2 cut(s)	18, 31
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	18, 31
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	31, 57, 119
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	2 cut(s)	72, 108
LpnPI	CCDG	5 cut(s)	31, 44, 52, 70, 109
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	89, 95, 139, 149
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	16, 25, 67
MroI	TCCGGA	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	2 cut(s)	18, 31
NdeII	GATC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	119
PciSI	GCTCTTC	2 cut(s)	72, 108
PdmI	GAANNNNTTC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	28, 69
SapI	GCTCTTC	2 cut(s)	72, 108
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	28, 69
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	3 cut(s)	30, 68, 103
SinI	GGWCC	2 cut(s)	28, 69
Sse9I	AATT	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	28, 69
XmnI	GAANNNNTTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.