Rh3AG143900
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003729
Physical Location & Seq
Forward (+)
12726507 .. 12729160
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG143900.1

Sequence Viewer

Length: 870 bp
ATGATCAATCCCTCCTCGTCCAATCCCCAATCCATGTCCTCCGACGCCTCCGGTAAGAAGGTCCGGAAGCCTTACACCATCACCAAGTCCAGAGAGAGCTGGACCGAGGAAGAGCACGACAAGTTCCTTGAAGCTCTTCAACTGTTTGATCGTGACTGGAAGAAAATTGAAGATTTTGTGGGTTCTAAAACGGTTATTCAGATTCGAAGTCATGCGCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAACAGCACATGTGCCTCCTCCTCGGCCAAAGCGCAAGGCTTCTCATCCTTACCCGCAGAAGGCCTCCAAAAATGTTTTAATTCCCTTTCAAGCATCACTTGCTTATCCTTCTTCCATGAATGCCATTGCACCTGGCTATTGTCCTTGGGATGAAGCTTCGATTTTCTTAAATGCTGGATCAGACCAAATTGTGTTGTCACACGAAGAATTTATTAATCGTCAAGGAACGGAAGCTGATATTGGATCAAAGGGGGTAGCAATAATTAGTACATGCGATCCTAGTGGTATCGCAAGCTCAAGTAGAACCCTACCTAGTTCCGAGATACCAAAGCAAGGGTCACAAGTTCCTGTCAGCCATGGTATTCCTGATTTTGCCGAAGTTTATAGCTTCATTGGAGGTGTTTTTGATCCGGACACCCAAGGCCATGCTCAGAAACTCAAGGAAATGGATCCCATTAATTTCGAAACTGTTTTGTTGTTGATGAGAAACCTCAGCATCAACTTGTCTAGCCCAGATTTTGAACCAATTAGGAAGGTCCTAGTTTCAAATGATGCCAATATGAAAACAGCAGCTGCAGGAAATACTCCCAGTTATCGGAATAACGATCTTTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

31.81

Weight (kDa)

7.72

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 31 - 76 1.2e-12 Myb-like DNA-binding domain
RVE6 PF24904 205 - 265 2.6e-33 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccIII TCCGGA 2 cut(s) 63, 661
AciI CCGC 1 cut(s) 305
AclWI GGATC 6 cut(s) 436, 502, 521, 653, 695, 708
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 224, 520
AfiI CCNNNNNNNGG 3 cut(s) 310, 584, 846
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 8 cut(s) 131, 140, 170, 232, 239, 341, 773, 798
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 7 cut(s) 99, 134, 407, 485, 546, 639, 824
AluI AGCT 7 cut(s) 99, 134, 407, 485, 546, 639, 824
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 6 cut(s) 436, 502, 521, 653, 695, 708
AlwNI CAGNNNCTG 1 cut(s) 824
Aor13HI TCCGGA 2 cut(s) 63, 661
AoxI GGCC 3 cut(s) 275, 312, 673
ApeKI GCWGC 2 cut(s) 821, 824
ApoI RAATTY 1 cut(s) 458
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AseI ATTAAT 2 cut(s) 465, 708
Asp700I GAANNNNTTC 2 cut(s) 135, 224
AspLEI GCGC 2 cut(s) 217, 285
AspS9I GGNCC 3 cut(s) 61, 102, 787
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 2 cut(s) 205, 714
AvaII GGWCC 3 cut(s) 61, 102, 787
BamHI GGATCC 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 811, 833
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 3
BfaI CTAG 4 cut(s) 531, 564, 759, 791
BfmI CTRYAG 1 cut(s) 825
BisI GCNGC 2 cut(s) 822, 825
BlsI GCNGC 2 cut(s) 823, 826
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 3 cut(s) 61, 102, 787
BmgT120I GGNCC 3 cut(s) 61, 102, 787
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 353, 756, 793
BmuI ACTGGG 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 2 cut(s) 205, 714
BpuEI CTTGAG 2 cut(s) 532, 674
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 105, 272, 395, 607, 670
BsaWI WCCGGW 3 cut(s) 50, 63, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 584, 846
Bse1I ACTGG 2 cut(s) 161, 840
Bse3DI GCAATG 1 cut(s) 375
BseAI TCCGGA 2 cut(s) 63, 661
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 105, 272, 395, 607, 670
BseGI GGATG 2 cut(s) 295, 406
BseLI CCNNNNNNNGG 3 cut(s) 310, 584, 846
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 695, 757
BseNI ACTGG 2 cut(s) 161, 840
BseRI GAGGAG 3 cut(s) 4, 258, 261
BseXI GCAGC 2 cut(s) 811, 833
BshFI GGCC 3 cut(s) 277, 314, 675
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 3 cut(s) 51, 64, 662
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 310, 584, 846
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 3 cut(s) 277, 314, 675
Bsp119I TTCGAA 2 cut(s) 205, 714
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 2 cut(s) 63, 661
Bsp143I GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 1 cut(s) 305
BspANI GGCC 3 cut(s) 277, 314, 675
BspCNI CTCAG 2 cut(s) 694, 756
BspEI TCCGGA 2 cut(s) 63, 661
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 6 cut(s) 436, 502, 521, 653, 695, 708
BspQI GCTCTTC 2 cut(s) 105, 141
BspT104I TTCGAA 2 cut(s) 205, 714
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 161, 840
BssECI CCNNGG 5 cut(s) 105, 272, 395, 607, 670
BssMI GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 3 cut(s) 395, 607, 670
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 144, 193, 721
Bst6I CTCTTC 2 cut(s) 105, 141
BstACI GRCGYC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBI TTCGAA 2 cut(s) 205, 714
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 2 cut(s) 681, 743
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 2 cut(s) 295, 406
BstHHI GCGC 2 cut(s) 217, 285
BstKTI GATC 8 cut(s) 6, 151, 431, 497, 529, 661, 703, 859
BstMBI GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 263, 525
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 2 cut(s) 811, 833
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuRI GGCC 3 cut(s) 277, 314, 675
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 295, 406
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 2 cut(s) 217, 285
Cfr13I GGNCC 3 cut(s) 61, 102, 787
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 223, 519
CviAII CATG 8 cut(s) 34, 212, 260, 367, 522, 608, 677, 864
CviQI GTAC 2 cut(s) 223, 519
DdeI CTNAG 2 cut(s) 681, 743
DpnI GATC 8 cut(s) 5, 150, 430, 496, 528, 660, 702, 858
DpnII GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 105, 141
EarI CTCTTC 2 cut(s) 105, 141
Eco130I CCWWGG 3 cut(s) 395, 607, 670
Eco147I AGGCCT 1 cut(s) 314
Eco47I GGWCC 3 cut(s) 61, 102, 787
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 3 cut(s) 395, 607, 670
ErhI CCWWGG 3 cut(s) 395, 607, 670
FaeI CATG 8 cut(s) 37, 215, 263, 370, 525, 611, 680, 867
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 333, 365
FaqI GGGAC 1 cut(s) 262
FatI CATG 8 cut(s) 33, 211, 259, 366, 521, 607, 676, 863
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 822, 825
FokI GGATG 2 cut(s) 282, 413
Fsp4HI GCNGC 2 cut(s) 822, 825
FspBI CTAG 4 cut(s) 531, 564, 759, 791
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 2 cut(s) 216, 284
GluI GCNGC 2 cut(s) 822, 825
HaeIII GGCC 3 cut(s) 277, 314, 675
HapII CCGG 3 cut(s) 51, 64, 662
HgaI GACGC 1 cut(s) 53
HhaI GCGC 2 cut(s) 217, 285
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 8 cut(s) 37, 215, 263, 370, 525, 611, 680, 867
Hin6I GCGC 2 cut(s) 215, 283
HinP1I GCGC 2 cut(s) 215, 283
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 1 cut(s) 202
HpaII CCGG 3 cut(s) 51, 64, 662
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 6 cut(s) 43, 201, 433, 571, 684, 849
Hpy188III TCNNGA 6 cut(s) 64, 90, 152, 229, 617, 662
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 52, 304, 369, 778
HpyCH4III ACNGT 3 cut(s) 144, 193, 721
HpyCH4V TGCA 2 cut(s) 380, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 681, 743
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 8 cut(s) 37, 215, 263, 370, 525, 611, 680, 867
HspAI GCGC 2 cut(s) 215, 283
Kpn2I TCCGGA 2 cut(s) 63, 661
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
LguI GCTCTTC 2 cut(s) 105, 141
Lsp1109I GCAGC 2 cut(s) 811, 833
LweI GCATC 3 cut(s) 353, 756, 793
MaeI CTAG 4 cut(s) 531, 564, 759, 791
MaeIII GTNAC 3 cut(s) 152, 447, 588
MalI GATC 8 cut(s) 5, 150, 430, 496, 528, 660, 702, 858
MboI GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
MboII GAAGA 6 cut(s) 122, 128, 172, 182, 354, 467
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 7 cut(s) 165, 330, 438, 458, 513, 709, 777
MmeI TCCRAC 1 cut(s) 66
MroI TCCGGA 2 cut(s) 63, 661
MroXI GAANNNNTTC 2 cut(s) 135, 224
MseI TTAA 4 cut(s) 329, 419, 465, 708
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 3 cut(s) 51, 64, 662
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 350
NcoI CCATGG 1 cut(s) 607
NdeII GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
NlaIII CATG 8 cut(s) 37, 215, 263, 370, 525, 611, 680, 867
NlaIV GGNNCC 1 cut(s) 702
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 152, 447, 588
NsbI TGCGCA 1 cut(s) 216
NspI RCATGY 2 cut(s) 263, 525
NspV TTCGAA 2 cut(s) 205, 714
PceI AGGCCT 1 cut(s) 314
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 105, 141
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 2 cut(s) 135, 224
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 823, 826
PpuMI RGGWCCY 1 cut(s) 787
PscI ACATGT 1 cut(s) 259
PshBI ATTAAT 2 cut(s) 465, 708
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 3 cut(s) 61, 102, 787
PspPPI RGGWCCY 1 cut(s) 787
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 224, 520
RsaNI GTAC 2 cut(s) 223, 519
SapI GCTCTTC 2 cut(s) 105, 141
SaqAI TTAA 4 cut(s) 329, 419, 465, 708
SatI GCNGC 2 cut(s) 822, 825
Sau3AI GATC 8 cut(s) 3, 148, 428, 494, 526, 658, 700, 856
Sau96I GGNCC 3 cut(s) 61, 102, 787
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 3 cut(s) 353, 756, 793
SfcI CTRYAG 1 cut(s) 825
SfuI TTCGAA 2 cut(s) 205, 714
SinI GGWCC 3 cut(s) 61, 102, 787
SmlI CTYRAG 2 cut(s) 547, 689
SmoI CTYRAG 2 cut(s) 547, 689
Sse9I AATT 7 cut(s) 165, 330, 438, 458, 513, 709, 777
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 1 cut(s) 305
SspMI CTAG 4 cut(s) 531, 564, 759, 791
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 3 cut(s) 395, 607, 670
TaaI ACNGT 3 cut(s) 144, 193, 721
TaqI TCGA 3 cut(s) 205, 410, 714
TaqII GACCGA 1 cut(s) 119
TasI AATT 7 cut(s) 165, 330, 438, 458, 513, 709, 777
TatI WGTACW 2 cut(s) 222, 518
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 4 cut(s) 329, 419, 465, 708
Tru9I TTAA 4 cut(s) 329, 419, 465, 708
TseFI GTSAC 3 cut(s) 152, 447, 588
TseI GCWGC 2 cut(s) 821, 824
Tsp45I GTSAC 3 cut(s) 152, 447, 588
TspDTI ATGAA 5 cut(s) 383, 417, 631, 827, 852
TspGWI ACGGA 1 cut(s) 494
VpaK11BI GGWCC 3 cut(s) 61, 102, 787
VspI ATTAAT 2 cut(s) 465, 708
XapI RAATTY 1 cut(s) 458
XceI RCATGY 2 cut(s) 263, 525
XmnI GAANNNNTTC 2 cut(s) 135, 224
XspI CTAG 4 cut(s) 531, 564, 759, 791
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.