pycom04g10070
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003729
Physical Location & Seq
Reverse (-)
12793959 .. 12796695
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10070.6

Sequence Viewer

Length: 795 bp
ATGAACTCCACTGACGCCAACTGCCACCAATCGTCAATGGGTACGGCGTCGACGCCGTCCTCAGACGGGTCAGGGAAGAAGGTCCGGAAGCCATACACCATCACCAAGTCCAGAGAAAGCTGGACCGACGAAGAGCACGACAAGTTCCTTGAAGCTCTTCAACTGTTTGATCGAGACTGGAAGAAAATCGAAGATTTTGTGGGTTCGAAAACCGTTATTCAGATTCGAAGTCATGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAGCGGGACAACAGCACACGTGCCTCCTCCGCGGCCAAAGCGCAAGGCTGCTTATCCTTACCCGCAGAAGGCCTCAAAAAATGGTTCTCCATTGTTGAAGATAGTGGCATTGTTTTTACTTCCGTTGCACGCATCCATTGCTTATCCTTCTTCAATGAACGCCATTTCATCTACGTATTCTCCTTGGGATGAAAATTCCATTTTGATAAACCCTCCATCGGACCAAATTCTGTTGTCACAAGAAGAATTTACTAATCTTCACGGAACTGAAGGTCTTCCTGATTTTTCCCAAGTTTATGGCTTCATCGGGAGTGTTTTTGATCCAGACACAAAGGGTCACGCTCAGAAACTCAGGGAAATGGATCCCATTAATTTAGAAACTGTTCTGTTGTTAATGAGGAATCTCATCATCAACTTGTCCAGTCCGGGCTTTGAGCCAATGAGGAAGGTCCTGGTATCATGTGATGTCAATACGAAAACAGTAGATGCAGGAATTGTCCCCACGAAGCTGAGCAACGGTCTGTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.25

Weight (kDa)

8.63

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 4 cut(s) 267, 293, 295, 326
AclWI GGATC 3 cut(s) 578, 620, 633
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 3 cut(s) 457, 489, 509
AcuI CTGAAG 1 cut(s) 552
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 3 cut(s) 15, 47, 53
AfaI GTAC 2 cut(s) 43, 245
AfiI CCNNNNNNNGG 3 cut(s) 66, 331, 481
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 6 cut(s) 152, 161, 253, 260, 361, 417
AjnI CCWGG 1 cut(s) 714
AluBI AGCT 3 cut(s) 120, 155, 772
AluI AGCT 3 cut(s) 120, 155, 772
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 3 cut(s) 578, 620, 633
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 2 cut(s) 296, 333
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 3 cut(s) 457, 489, 509
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 4 cut(s) 156, 245, 537, 645
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 4 cut(s) 82, 123, 484, 712
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 2 cut(s) 206, 226
AvaII GGWCC 4 cut(s) 82, 123, 484, 712
BamHI GGATCC 1 cut(s) 625
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 107, 487
BceAI ACGGC 2 cut(s) 40, 60
BciT130I CCWGG 1 cut(s) 716
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 2 cut(s) 296, 312
BlpI GCTNAGC 1 cut(s) 773
BlsI GCNGC 2 cut(s) 297, 313
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 690, 716
Bme18I GGWCC 4 cut(s) 82, 123, 484, 712
BmgT120I GGNCC 4 cut(s) 82, 123, 484, 712
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 690, 716
BmsI GCATC 2 cut(s) 404, 739
BpiI GAAGAC 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 773
Bpu14I TTCGAA 2 cut(s) 206, 226
BpuMI CCSGG 1 cut(s) 690
BsaAI YACGTR 2 cut(s) 283, 438
BsaHI GRCGYC 3 cut(s) 15, 47, 53
BsaJI CCNNGG 2 cut(s) 293, 446
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 331, 481
Bse1I ACTGG 2 cut(s) 182, 684
Bse3DI GCAATG 1 cut(s) 399
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 1 cut(s) 716
BseDI CCNNGG 2 cut(s) 293, 446
BseGI GGATG 2 cut(s) 395, 457
BseLI CCNNNNNNNGG 3 cut(s) 66, 331, 481
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 4 cut(s) 75, 620, 628, 764
BseNI ACTGG 2 cut(s) 182, 684
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 298, 335
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 85, 689
BslFI GGGAC 2 cut(s) 283, 746
BslI CCNNNNNNNGG 3 cut(s) 66, 331, 481
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 2 cut(s) 283, 746
BsnI GGCC 2 cut(s) 298, 335
Bsp119I TTCGAA 2 cut(s) 206, 226
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 169, 583, 625
Bsp1720I GCTNAGC 1 cut(s) 773
BspACI CCGC 4 cut(s) 267, 293, 295, 326
BspANI GGCC 2 cut(s) 298, 335
BspCNI CTCAG 4 cut(s) 74, 619, 627, 765
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 3 cut(s) 578, 620, 633
BspQI GCTCTTC 2 cut(s) 126, 162
BspT104I TTCGAA 2 cut(s) 206, 226
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 2 cut(s) 182, 684
BssECI CCNNGG 2 cut(s) 293, 446
BssMI GATC 3 cut(s) 169, 583, 625
BssNI GRCGYC 3 cut(s) 15, 47, 53
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 5 cut(s) 165, 214, 646, 745, 782
Bst6I CTCTTC 2 cut(s) 126, 162
BstACI GRCGYC 3 cut(s) 15, 47, 53
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 2 cut(s) 283, 438
BstBI TTCGAA 2 cut(s) 206, 226
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 61, 606, 614, 773
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 395, 457
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 172, 586, 628
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 169, 583, 625
BstMWI GCNNNNNNNGC 3 cut(s) 292, 301, 401
BstNI CCWGG 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 688, 714
BstSNI TACGTA 1 cut(s) 438
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 2 cut(s) 298, 335
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 395, 457
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 82, 123, 484, 712
Cfr42I CCGCGG 1 cut(s) 296
CseI GACGC 3 cut(s) 23, 36, 61
Csp6I GTAC 2 cut(s) 42, 244
CviAII CATG 3 cut(s) 233, 723, 789
CviQI GTAC 2 cut(s) 42, 244
DdeI CTNAG 4 cut(s) 61, 606, 614, 773
DpnI GATC 3 cut(s) 171, 585, 627
DpnII GATC 3 cut(s) 169, 583, 625
EaeI YGGCCR 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 126, 162
EarI CTCTTC 2 cut(s) 126, 162
Eco105I TACGTA 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 335
Eco47I GGWCC 4 cut(s) 82, 123, 484, 712
Eco57I CTGAAG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 714
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 3 cut(s) 236, 726, 792
FaiI YATR 5 cut(s) 94, 234, 561, 724, 790
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 2 cut(s) 283, 746
FatI CATG 3 cut(s) 232, 722, 788
FauI CCCGC 2 cut(s) 260, 333
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 296, 312
FokI GGATG 2 cut(s) 382, 464
Fsp4HI GCNGC 2 cut(s) 296, 312
GlaI GCGC 1 cut(s) 305
GluI GCNGC 2 cut(s) 296, 312
HaeIII GGCC 2 cut(s) 298, 335
HapII CCGG 2 cut(s) 85, 689
HgaI GACGC 3 cut(s) 23, 36, 61
HhaI GCGC 1 cut(s) 306
Hin1I GRCGYC 3 cut(s) 15, 47, 53
Hin1II CATG 3 cut(s) 236, 726, 792
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 223, 664
HpaII CCGG 2 cut(s) 85, 689
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 64, 222, 484, 609
Hpy188III TCNNGA 7 cut(s) 85, 111, 173, 250, 542, 571, 587
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 3 cut(s) 52, 55, 131
HpyAV CCTTC 5 cut(s) 73, 325, 420, 527, 703
HpyCH4III ACNGT 5 cut(s) 165, 214, 646, 745, 782
HpyCH4IV ACGT 2 cut(s) 282, 437
HpyCH4V TGCA 2 cut(s) 391, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 301, 401
HpyF3I CTNAG 4 cut(s) 61, 606, 614, 773
HpySE526I ACGT 2 cut(s) 282, 437
Hsp92I GRCGYC 3 cut(s) 15, 47, 53
Hsp92II CATG 3 cut(s) 236, 726, 792
HspAI GCGC 1 cut(s) 304
Kpn2I TCCGGA 1 cut(s) 84
KspI CCGCGG 1 cut(s) 296
Kzo9I GATC 3 cut(s) 169, 583, 625
LguI GCTCTTC 2 cut(s) 126, 162
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 404, 739
MaeII ACGT 2 cut(s) 282, 437
MaeIII GTNAC 2 cut(s) 498, 599
MalI GATC 3 cut(s) 171, 585, 627
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 169, 583, 625
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 5 cut(s) 457, 489, 509, 634, 756
MnlI CCTC 7 cut(s) 70, 297, 300, 346, 486, 654, 699
MroI TCCGGA 1 cut(s) 84
MroXI GAANNNNTTC 4 cut(s) 156, 245, 537, 645
MseI TTAA 2 cut(s) 633, 656
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 2 cut(s) 85, 689
MspR9I CCNGG 2 cut(s) 690, 716
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 3 cut(s) 292, 301, 401
NciI CCSGG 1 cut(s) 690
NdeII GATC 3 cut(s) 169, 583, 625
NlaIII CATG 3 cut(s) 236, 726, 792
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 2 cut(s) 498, 599
NspV TTCGAA 2 cut(s) 206, 226
PceI AGGCCT 1 cut(s) 335
PciSI GCTCTTC 2 cut(s) 126, 162
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 4 cut(s) 156, 245, 537, 645
PfeI GAWTC 2 cut(s) 223, 664
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 297, 313
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 2 cut(s) 283, 438
PpuMI RGGWCCY 1 cut(s) 712
PshBI ATTAAT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 714
PspCI CACGTG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 4 cut(s) 82, 123, 484, 712
PspPPI RGGWCCY 1 cut(s) 712
PsuI RGATCY 1 cut(s) 625
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 2 cut(s) 43, 245
RsaNI GTAC 2 cut(s) 42, 244
SacII CCGCGG 1 cut(s) 296
SalI GTCGAC 1 cut(s) 49
SapI GCTCTTC 2 cut(s) 126, 162
SaqAI TTAA 2 cut(s) 633, 656
SatI GCNGC 2 cut(s) 296, 312
Sau3AI GATC 3 cut(s) 169, 583, 625
Sau96I GGNCC 4 cut(s) 82, 123, 484, 712
ScaI AGTACT 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 690, 716
SduI GDGCHC 1 cut(s) 138
SetI ASST 8 cut(s) 84, 122, 157, 285, 440, 538, 714, 774
SfaNI GCATC 2 cut(s) 404, 739
Sfr303I CCGCGG 1 cut(s) 296
SfuI TTCGAA 2 cut(s) 206, 226
SgrBI CCGCGG 1 cut(s) 296
SgrDI CGTCGACG 1 cut(s) 49
SinI GGWCC 4 cut(s) 82, 123, 484, 712
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 5 cut(s) 457, 489, 509, 634, 756
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 4 cut(s) 267, 293, 295, 326
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 688, 714
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 5 cut(s) 165, 214, 646, 745, 782
TaiI ACGT 2 cut(s) 285, 440
TaqI TCGA 5 cut(s) 50, 172, 189, 206, 226
TaqII GACCGA 1 cut(s) 140
TasI AATT 5 cut(s) 457, 489, 509, 634, 756
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 2 cut(s) 223, 664
Tru1I TTAA 2 cut(s) 633, 656
Tru9I TTAA 2 cut(s) 633, 656
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 2 cut(s) 498, 599
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 498, 599
TspDTI ATGAA 5 cut(s) 17, 420, 434, 468, 556
TspGWI ACGGA 2 cut(s) 375, 540
TspRI CASTG 1 cut(s) 16
Tth111I GACNNNGTC 1 cut(s) 55
VpaK11BI GGWCC 4 cut(s) 82, 123, 484, 712
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 3 cut(s) 457, 489, 509
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 4 cut(s) 156, 245, 537, 645
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.