Rroxscaffold_6G00412740
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003729
Physical Location & Seq
Reverse (-)
35227111 .. 35230464
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412740.1

Sequence Viewer

Length: 927 bp
ATGATCAATCCCTCCTCGTCCAATCCCCAATCCATGTCCTCCGACGGCTCCGGTAAGAAGGTCCGGAAGCCTTACACCATCACCAAGTCCAGAGAGAGCTGGACCGAGGAAGAGCACGACAAGTTCCTTGAAGCTCTTCAACTGTTTGATCGTGACTGGAAGAAAATCGAAGATTTTGTGGGTTCTAAAACGGTTATTCAGATTCGAAGTCATGCACAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAACAGCACATGTGCCTCCTCCTCGGCCAAAGCGCAAGGCTTCTCATCCTTACCCGCAAAAAGCCTCCAAAAATGTTTTAATTCCCTTGCAAGCATCATTTGCTTATCCTTCTTCCATGAATGCCATTGCACCTGGCTATTGTCCTTGGGATGAAGCTTCGATTTTCTTAAATGCTGGATCAGACCAAATTGTGTTGTCACACGAAGAATTTATTAATCCCGATATTGGATCAAAGGGGGTAGCAAGAATTAGTACATGCGATCCTAGTGGTATCGCAAGCTCAAGTAGAACCCTACCTAGTTCCGAGATACTAAAGCAAGGGTCACAAGCTCCTGTCAGCCATGGTATTCCTGATTTTGCCGAAGTTTATAGCTTCATTGGAGGTGTTTTTGATCCGGACACCCAAGGCCATGCTCAGAAACTCAAGGAAATGGATCCCATTAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCAGCATCAACTTGTCTAGCCCAGATTTTGAATCGATTAGGAAGGTCCTAGTTTCAAATGATGTCAATATGAAAACAGCAGCTGCAGGAAATATTCCCAGTTACGTATGGTCCTGGAGAAAAAGTATGGTGGTTCTAGAACAGCAGGCCGAATCTGATCTTAGGGCTATAGTTCTGCAGCCACAACCAGGAGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

34.14

Weight (kDa)

7.75

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 31 - 76 1.3e-12 Myb-like DNA-binding domain
RVE6 PF24904 200 - 260 2.6e-33 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 63, 646
AciI CCGC 1 cut(s) 305
AclWI GGATC 6 cut(s) 436, 487, 506, 638, 680, 693
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 1 cut(s) 458
AfaI GTAC 2 cut(s) 224, 505
AfiI CCNNNNNNNGG 2 cut(s) 476, 914
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 7 cut(s) 131, 140, 232, 239, 701, 758, 783
AjnI CCWGG 3 cut(s) 382, 839, 913
AluBI AGCT 7 cut(s) 99, 134, 407, 531, 581, 624, 809
AluI AGCT 7 cut(s) 99, 134, 407, 531, 581, 624, 809
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 6 cut(s) 436, 487, 506, 638, 680, 693
AlwNI CAGNNNCTG 1 cut(s) 809
Aor13HI TCCGGA 2 cut(s) 63, 646
AoxI GGCC 3 cut(s) 275, 658, 873
ApeKI GCWGC 3 cut(s) 806, 809, 904
ApoI RAATTY 1 cut(s) 458
AseI ATTAAT 2 cut(s) 465, 693
Asp700I GAANNNNTTC 2 cut(s) 135, 224
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 4 cut(s) 61, 102, 772, 837
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 4 cut(s) 61, 102, 772, 837
BamHI GGATCC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 3 cut(s) 796, 818, 916
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 3 cut(s) 384, 841, 915
BclI TGATCA 1 cut(s) 3
BfaI CTAG 5 cut(s) 516, 549, 744, 776, 863
BfmI CTRYAG 3 cut(s) 810, 894, 902
BisI GCNGC 3 cut(s) 807, 810, 905
BlsI GCNGC 3 cut(s) 808, 811, 906
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 3 cut(s) 384, 841, 915
Bme18I GGWCC 4 cut(s) 61, 102, 772, 837
BmgT120I GGNCC 4 cut(s) 61, 102, 772, 837
BmiI GGNNCC 2 cut(s) 49, 687
BmrFI CCNGG 3 cut(s) 384, 841, 915
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 2 cut(s) 353, 741
BmuI ACTGGG 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 862
Bpu10I CCTNAGC 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 517, 659
Bsa29I ATCGAT 1 cut(s) 761
BsaAI YACGTR 1 cut(s) 832
BsaJI CCNNGG 5 cut(s) 105, 272, 395, 592, 655
BsaWI WCCGGW 3 cut(s) 50, 63, 646
BsaXI ACNNNNNCTCC 2 cut(s) 835, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 914
Bse1I ACTGG 2 cut(s) 161, 825
Bse3DI GCAATG 1 cut(s) 375
BseAI TCCGGA 2 cut(s) 63, 646
BseBI CCWGG 3 cut(s) 384, 841, 915
BseCI ATCGAT 1 cut(s) 761
BseDI CCNNGG 5 cut(s) 105, 272, 395, 592, 655
BseGI GGATG 2 cut(s) 295, 406
BseLI CCNNNNNNNGG 2 cut(s) 476, 914
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 680, 742
BseNI ACTGG 2 cut(s) 161, 825
BseRI GAGGAG 3 cut(s) 4, 258, 261
BseXI GCAGC 3 cut(s) 796, 818, 916
BshFI GGCC 3 cut(s) 277, 660, 875
BshVI ATCGAT 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 3 cut(s) 51, 64, 647
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 476, 914
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 3 cut(s) 277, 660, 875
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 2 cut(s) 63, 646
Bsp143I GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
Bsp19I CCATGG 1 cut(s) 592
BspACI CCGC 1 cut(s) 305
BspANI GGCC 3 cut(s) 277, 660, 875
BspCNI CTCAG 2 cut(s) 679, 741
BspDI ATCGAT 1 cut(s) 761
BspEI TCCGGA 2 cut(s) 63, 646
BspLI GGNNCC 2 cut(s) 49, 687
BspMAI CTGCAG 2 cut(s) 814, 906
BspPI GGATC 6 cut(s) 436, 487, 506, 638, 680, 693
BspQI GCTCTTC 2 cut(s) 105, 141
BspT104I TTCGAA 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 161, 825
BssECI CCNNGG 5 cut(s) 105, 272, 395, 592, 655
BssMI GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
BssT1I CCWWGG 3 cut(s) 395, 592, 655
Bst2UI CCWGG 3 cut(s) 384, 841, 915
Bst4CI ACNGT 3 cut(s) 144, 193, 706
Bst6I CTCTTC 2 cut(s) 105, 141
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 342, 529, 873
BstDEI CTNAG 3 cut(s) 666, 728, 887
BstDSI CCRYGG 1 cut(s) 592
BstF5I GGATG 2 cut(s) 295, 406
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 8 cut(s) 6, 151, 431, 482, 514, 646, 688, 886
BstMBI GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 3 cut(s) 384, 841, 915
BstNSI RCATGY 2 cut(s) 263, 510
BstSCI CCNGG 3 cut(s) 382, 839, 913
BstSFI CTRYAG 3 cut(s) 810, 894, 902
BstSNI TACGTA 1 cut(s) 832
BstV1I GCAGC 3 cut(s) 796, 818, 916
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 761
BsuRI GGCC 3 cut(s) 277, 660, 875
BsuTUI ATCGAT 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 2 cut(s) 295, 406
Cac8I GCNNGC 3 cut(s) 342, 529, 873
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 4 cut(s) 61, 102, 772, 837
ClaI ATCGAT 1 cut(s) 761
Csp6I GTAC 2 cut(s) 223, 504
CviAII CATG 7 cut(s) 34, 212, 260, 367, 507, 593, 662
CviQI GTAC 2 cut(s) 223, 504
DdeI CTNAG 3 cut(s) 666, 728, 887
DpnI GATC 8 cut(s) 5, 150, 430, 481, 513, 645, 687, 885
DpnII GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 105, 141
EarI CTCTTC 2 cut(s) 105, 141
Eco105I TACGTA 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 395, 592, 655
Eco47I GGWCC 4 cut(s) 61, 102, 772, 837
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 3 cut(s) 382, 839, 913
EcoT14I CCWWGG 3 cut(s) 395, 592, 655
ErhI CCWWGG 3 cut(s) 395, 592, 655
FaeI CATG 7 cut(s) 37, 215, 263, 370, 510, 596, 665
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 262
FatI CATG 7 cut(s) 33, 211, 259, 366, 506, 592, 661
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 807, 810, 905
FokI GGATG 2 cut(s) 282, 413
Fsp4HI GCNGC 3 cut(s) 807, 810, 905
FspBI CTAG 5 cut(s) 516, 549, 744, 776, 863
GlaI GCGC 1 cut(s) 284
GluI GCNGC 3 cut(s) 807, 810, 905
GsuI CTGGAG 1 cut(s) 862
HaeIII GGCC 3 cut(s) 277, 660, 875
HapII CCGG 3 cut(s) 51, 64, 647
HhaI GCGC 1 cut(s) 285
Hin1II CATG 7 cut(s) 37, 215, 263, 370, 510, 596, 665
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 3 cut(s) 202, 758, 878
HpaII CCGG 3 cut(s) 51, 64, 647
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 6 cut(s) 43, 201, 433, 556, 669, 883
Hpy188III TCNNGA 8 cut(s) 64, 90, 152, 229, 470, 602, 647, 863
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 52, 369, 763
HpyCH4III ACNGT 3 cut(s) 144, 193, 706
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 5 cut(s) 215, 340, 380, 812, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 666, 728, 887
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 7 cut(s) 37, 215, 263, 370, 510, 596, 665
HspAI GCGC 1 cut(s) 283
Kpn2I TCCGGA 2 cut(s) 63, 646
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
LguI GCTCTTC 2 cut(s) 105, 141
LmnI GCTCC 2 cut(s) 53, 586
Lsp1109I GCAGC 3 cut(s) 796, 818, 916
LweI GCATC 2 cut(s) 353, 741
MaeI CTAG 5 cut(s) 516, 549, 744, 776, 863
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 4 cut(s) 152, 447, 573, 827
MalI GATC 8 cut(s) 5, 150, 430, 481, 513, 645, 687, 885
MboI GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
MboII GAAGA 6 cut(s) 122, 128, 172, 182, 354, 467
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 5 cut(s) 330, 438, 458, 498, 694
MmeI TCCRAC 1 cut(s) 66
MroI TCCGGA 2 cut(s) 63, 646
MroXI GAANNNNTTC 2 cut(s) 135, 224
MseI TTAA 4 cut(s) 329, 419, 465, 693
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 3 cut(s) 51, 64, 647
MspR9I CCNGG 3 cut(s) 384, 841, 915
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 3 cut(s) 384, 841, 915
MwoI GCNNNNNNNGC 1 cut(s) 350
NcoI CCATGG 1 cut(s) 592
NdeII GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
NlaIII CATG 7 cut(s) 37, 215, 263, 370, 510, 596, 665
NlaIV GGNNCC 2 cut(s) 49, 687
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 152, 447, 573
NspI RCATGY 2 cut(s) 263, 510
NspV TTCGAA 1 cut(s) 205
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 105, 141
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 2 cut(s) 135, 224
PfeI GAWTC 3 cut(s) 202, 758, 878
PfoI TCCNGGA 1 cut(s) 839
PkrI GCNGC 3 cut(s) 808, 811, 906
Ppu21I YACGTR 1 cut(s) 832
PpuMI RGGWCCY 1 cut(s) 772
PscI ACATGT 1 cut(s) 259
PshBI ATTAAT 2 cut(s) 465, 693
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 3 cut(s) 382, 839, 913
PspGI CCWGG 3 cut(s) 382, 839, 913
PspN4I GGNNCC 2 cut(s) 49, 687
PspPI GGNCC 4 cut(s) 61, 102, 772, 837
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 2 cut(s) 814, 906
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 2 cut(s) 224, 505
RsaNI GTAC 2 cut(s) 223, 504
SapI GCTCTTC 2 cut(s) 105, 141
SaqAI TTAA 4 cut(s) 329, 419, 465, 693
SatI GCNGC 3 cut(s) 807, 810, 905
Sau3AI GATC 8 cut(s) 3, 148, 428, 479, 511, 643, 685, 883
Sau96I GGNCC 4 cut(s) 61, 102, 772, 837
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 384, 841, 915
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 2 cut(s) 353, 741
SfcI CTRYAG 3 cut(s) 810, 894, 902
SfuI TTCGAA 1 cut(s) 205
SinI GGWCC 4 cut(s) 61, 102, 772, 837
SmlI CTYRAG 2 cut(s) 532, 674
SmoI CTYRAG 2 cut(s) 532, 674
SnaBI TACGTA 1 cut(s) 832
Sse9I AATT 5 cut(s) 330, 438, 458, 498, 694
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 820
SspMI CTAG 5 cut(s) 516, 549, 744, 776, 863
StyD4I CCNGG 3 cut(s) 382, 839, 913
StyI CCWWGG 3 cut(s) 395, 592, 655
TaaI ACNGT 3 cut(s) 144, 193, 706
TaiI ACGT 1 cut(s) 834
TaqI TCGA 4 cut(s) 168, 205, 410, 761
TaqII GACCGA 1 cut(s) 119
TasI AATT 5 cut(s) 330, 438, 458, 498, 694
TatI WGTACW 2 cut(s) 222, 503
TfiI GAWTC 3 cut(s) 202, 758, 878
Tru1I TTAA 4 cut(s) 329, 419, 465, 693
Tru9I TTAA 4 cut(s) 329, 419, 465, 693
TseFI GTSAC 3 cut(s) 152, 447, 573
TseI GCWGC 3 cut(s) 806, 809, 904
Tsp45I GTSAC 3 cut(s) 152, 447, 573
TspDTI ATGAA 4 cut(s) 383, 417, 616, 812
VpaK11BI GGWCC 4 cut(s) 61, 102, 772, 837
VspI ATTAAT 2 cut(s) 465, 693
XapI RAATTY 1 cut(s) 458
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 2 cut(s) 263, 510
XmnI GAANNNNTTC 2 cut(s) 135, 224
XspI CTAG 5 cut(s) 516, 549, 744, 776, 863
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.