AT3G09870

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005742
Physical Location & Seq
Reverse (-)
3027424 .. 3027961
538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09870.1

Sequence Viewer

Length: 342 bp
ATGTGCAAAAAGTTTAAGATTTTCATGAGAAAGCTACAAATTTGCTGCTTATTCACTAGATTCTCTAAAAGGGTAGGGAATTATTGTGAGTTTGAGGAAGAGGGTAATGCTGCATCAATGATTCCAAGTGATGTGAAGGAAGGGCATGTAGCAGTGATTGCGGTTAAGGGAGAGAGAATTAAGAGGTTTGTTTTAGAGCTTGAAGAGTTGAACAAACCAGAGTTCTTGAGGCTGCTCGAACAAGCGAGAGAGGAATTCGGGTTTCAACCAAGAGGACCTCTGACCATCCCATGCCAGCCGGAAGAAGTACAGAAGATTCTACAAGGAAGTAGAGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

8.3

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 35 - 107 2.1e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 39, 254
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 3 cut(s) 203, 211, 266
AluBI AGCT 2 cut(s) 34, 199
AluI AGCT 2 cut(s) 34, 199
ApeKI GCWGC 3 cut(s) 45, 110, 232
ApoI RAATTY 2 cut(s) 39, 254
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 32, 97, 219
BccI CCATC 1 cut(s) 293
BfaI CTAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 46, 111, 233
BlsI GCNGC 3 cut(s) 47, 112, 234
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmsI GCATC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 247
BseGI GGATG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 32, 97, 219
BsiSI CCGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 161
BspHI TCATGA 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 93, 198
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 296
BstF5I GGATG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 32, 97, 219
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 308
CviAII CATG 3 cut(s) 25, 146, 291
CviJI RGCY 4 cut(s) 34, 199, 232, 298
CviKI_1 RGCY 4 cut(s) 34, 199, 232, 298
CviQI GTAC 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 93, 198
EarI CTCTTC 2 cut(s) 93, 198
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 254
FaeI CATG 3 cut(s) 28, 149, 294
FaiI YATR 3 cut(s) 26, 147, 292
FatI CATG 3 cut(s) 24, 145, 290
Fnu4HI GCNGC 3 cut(s) 46, 111, 233
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 46, 111, 233
FspBI CTAG 1 cut(s) 57
GluI GCNGC 3 cut(s) 46, 111, 233
HapII CCGG 1 cut(s) 299
Hin1II CATG 3 cut(s) 28, 149, 294
HinfI GANTC 4 cut(s) 60, 121, 316, 335
HpaII CCGG 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 25, 226, 339
HpyAV CCTTC 2 cut(s) 130, 134
HpyCH4V TGCA 2 cut(s) 6, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 28, 149, 294
LpnPI CCDG 3 cut(s) 231, 308, 312
Lsp1109I GCAGC 3 cut(s) 32, 97, 219
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 57
MboII GAAGA 4 cut(s) 110, 215, 314, 325
MluCI AATT 4 cut(s) 39, 79, 177, 254
MnlI CCTC 7 cut(s) 88, 94, 177, 222, 244, 266, 288
MseI TTAA 3 cut(s) 15, 165, 180
MspI CCGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 28, 149, 294
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 3 cut(s) 60, 121, 316
PkrI GCNGC 3 cut(s) 47, 112, 234
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 15, 165, 180
SatI GCNGC 3 cut(s) 46, 111, 233
Sau96I GGNCC 1 cut(s) 275
SetI ASST 4 cut(s) 36, 188, 201, 280
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 39, 79, 177, 254
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 57
TaqI TCGA 1 cut(s) 237
TasI AATT 4 cut(s) 39, 79, 177, 254
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 3 cut(s) 60, 121, 316
Tru1I TTAA 3 cut(s) 15, 165, 180
Tru9I TTAA 3 cut(s) 15, 165, 180
TscAI CASTG 1 cut(s) 159
TseI GCWGC 3 cut(s) 45, 110, 232
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 39, 254
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.