Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432023.1

Orthogroup ID

OG0005742

Physical Location & Seq

Genomic Coordinates Forward (+)

757 .. 1212

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432023.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtgtccacaacagtttccccagaccaagaacatgaagaaagcagaagacagtagcttaatgaagctcaggctcataatcggcaagctacaaaaggggctctcactgctaactgcaagaggccctcctgatcatcgttgcagaggctgtgatgaaaaactggaggtagcagcaattgtaccagaagatgtcaaggaaggacattttgcagtgtttgcagttgtgggtaaggagacaacgaggtttgtgactaagctagagtccttgaatgaccctgcacttatggaattgctagagcaagccaaggacgagtatgggttccaacagaaaggtgctcttgaagttcattgcaggcctgaggaattgcattcaattcttgaaaactgcaggatggagcaaagtagatttgatgctgcatctaacgataattttcttactgccctggaagggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

5.61

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09870
fragaria_vesca	FvH4_6g16370 FvH4_6g16380
malus_domestica	MD04G1093700.v1.1 MD12G1113400.v1.1
prunus_persica	Prupe.6G232300_v2.0.a1
pyrus_communis	pycom04g08900
rosa_chinensis	RchiOBHm_Chr3g0470221 RchiOBHm_Chr3g0470231
rosa_laevigata	RLG00000024288 RLG00000024289
rosa_multiflora	Rmu_co8432023.1_g000001 Rmu_sc0008333.1_g000002 Rmu_sc0011611.1_g000007 Rmu_sc0022898.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411040 Rroxscaffold_6G00411060
rosa_rugosa	Rorug03G0107500
rosa_samantha	Rh3AG157100 Rh3AG157200 Rh3BG181200 Rh3BG181300 Rh3CG172100 Rh3CG172200 Rh3DG193500 Rh3DG193600
rosa_wichuraiana	Rw3G014950 Rw3G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	180, 452
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	268, 341, 372, 380
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	57, 67, 88, 256
AluI	AGCT	4 cut(s)	57, 67, 88, 256
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	121, 353
ApeKI	GCWGC	2 cut(s)	170, 413
AspS9I	GGNCC	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	182, 400
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	3 cut(s)	257, 293, 454
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	2 cut(s)	171, 414
BlsI	GCNGC	2 cut(s)	172, 415
Bme1390I	CCNGG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	400, 425
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	303, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	165
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	303, 441
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	82, 348
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	182, 400
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	123, 355
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	123, 355
Bsp1286I	GDGCHC	2 cut(s)	102, 337
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	123, 355
BspCNI	CTCAG	2 cut(s)	81, 349
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	303, 441
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	2 cut(s)	15, 53
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	86, 300, 353
BstDEI	CTNAG	3 cut(s)	68, 252, 357
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 215
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	182, 400
BstV2I	GAAGAC	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	123, 355
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	2 cut(s)	104, 216
BtsIMutI	CAGTG	2 cut(s)	104, 216
Cac8I	GCNNGC	3 cut(s)	86, 300, 353
CaiI	CAGNNNCTG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	179, 451
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	2 cut(s)	179, 451
DdeI	CTNAG	3 cut(s)	68, 252, 357
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 77, 284, 315
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	171, 414
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	171, 414
FspBI	CTAG	3 cut(s)	257, 293, 454
GluI	GCNGC	2 cut(s)	171, 414
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	123, 355
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	3 cut(s)	128, 338, 377
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	191, 440
HpyCH4III	ACNGT	2 cut(s)	15, 53
HpyCH4V	TGCA	9 cut(s)	116, 141, 209, 218, 278, 351, 367, 387, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 215
HpyF3I	CTNAG	3 cut(s)	68, 252, 357
Hsp92II	CATG	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	182, 400
LweI	GCATC	2 cut(s)	400, 425
MaeI	CTAG	3 cut(s)	257, 293, 454
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	49, 59, 197
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	102, 337
MluCI	AATT	5 cut(s)	174, 287, 362, 372, 427
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	113, 135, 137, 157, 234, 352
MseI	TTAA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	106, 215
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	355
PctI	GAATGC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	172, 415
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	147
RsaI	GTAC	2 cut(s)	180, 452
RsaNI	GTAC	2 cut(s)	179, 451
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	171, 414
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	2 cut(s)	102, 337
SetI	ASST	7 cut(s)	59, 69, 90, 168, 245, 258, 334
SfaNI	GCATC	2 cut(s)	400, 425
SfcI	CTRYAG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	174, 287, 362, 372, 427
SseBI	AGGCCT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	257, 293, 454
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	15, 53
TasI	AATT	5 cut(s)	174, 287, 362, 372, 427
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	111, 216
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	170, 413
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	50, 77, 168, 335
TspRI	CASTG	2 cut(s)	111, 216
XspI	CTAG	3 cut(s)	257, 293, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.