Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005742

Physical Location & Seq

Genomic Coordinates Forward (+)

23489981 .. 23490760

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCTACACTGAAAATCCGATCAAAGAAACCAGACGACATTCGAGGTCTCGTGATGCTGAGGCTGCTCATTCGGAAGCTTGTGCAGAAGGGTCTCTCCATTTTATCAGCCAGAGGCCTTCATCACCACAATGATTTTGATGAAGCCACAGTGGTGCCAGAAGATGTTAAAGAAGGGCATTTTGCTGTTTTTGCAGTGAAGGGCAAGGAGGCAGAGAGGTTTGTGGTGAAATTAGAGTCCTTGCAAAACCCTGAGTTTTTGAGGTTGCTAGAAGAAGCTGAGGAAGAATATGGATTTGAACAGAAGGGGGCTCTTGCTGTTCCTTGCAGGCCAGAGGAGTTGCATAAGATTTTAGAAAACAGGAGGGAGAAGAATAGCAGTAATAATAATAATATTAATCTTAGAGTTATACCAGGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

7.82

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09870
fragaria_vesca	FvH4_6g16370 FvH4_6g16380
malus_domestica	MD04G1093700.v1.1 MD12G1113400.v1.1
prunus_persica	Prupe.6G232300_v2.0.a1
pyrus_communis	pycom04g08900
rosa_chinensis	RchiOBHm_Chr3g0470221 RchiOBHm_Chr3g0470231
rosa_laevigata	RLG00000024288 RLG00000024289
rosa_multiflora	Rmu_co8432023.1_g000001 Rmu_sc0008333.1_g000002 Rmu_sc0011611.1_g000007 Rmu_sc0022898.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411040 Rroxscaffold_6G00411060
rosa_rugosa	Rorug03G0107500
rosa_samantha	Rh3AG157100 Rh3AG157200 Rh3BG181200 Rh3BG181300 Rh3CG172100 Rh3CG172200 Rh3DG193500 Rh3DG193600
rosa_wichuraiana	Rw3G014950 Rw3G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	412
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	79, 278
AluI	AGCT	2 cut(s)	79, 278
Alw26I	GTCTC	2 cut(s)	53, 98
AoxI	GGCC	2 cut(s)	115, 329
ApeKI	GCWGC	1 cut(s)	64
AseI	ATTAAT	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	116, 238
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	50
BbvCI	CCTCAGC	2 cut(s)	59, 279
BbvI	GCAGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	53, 98
BfaI	CTAG	2 cut(s)	269, 421
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	45, 407
Bpu10I	CCTNAGC	2 cut(s)	59, 279
BsaI	GGTCTC	2 cut(s)	53, 98
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	422
BseMII	CTCAG	3 cut(s)	50, 243, 270
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	117, 331
BshNI	GGYRCC	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	53, 98
BsnI	GGCC	2 cut(s)	117, 331
Bso31I	GGTCTC	2 cut(s)	53, 98
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	117, 331
BspCNI	CTCAG	3 cut(s)	51, 244, 271
BspLI	GGNNCC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	2 cut(s)	53, 98
BssMI	GATC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	59, 252, 279, 401
BstF5I	GGATG	1 cut(s)	422
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	2 cut(s)	53, 98
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 191
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	117, 331
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	8, 156, 201
Cac8I	GCNNGC	1 cut(s)	329
CviJI	RGCY	8 cut(s)	64, 79, 110, 117, 146, 278, 311, 331
CviKI_1	RGCY	8 cut(s)	64, 79, 110, 117, 146, 278, 311, 331
DdeI	CTNAG	4 cut(s)	59, 252, 279, 401
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	2 cut(s)	53, 98
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	313
FaiI	YATR	3 cut(s)	291, 345, 410
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	269, 421
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	117, 331
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	2 cut(s)	116, 238
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	20, 75
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	5 cut(s)	82, 128, 167, 193, 298
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	85, 194, 244, 327, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 191
HpyF3I	CTNAG	4 cut(s)	59, 252, 279, 401
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	8 cut(s)	45, 124, 171, 264, 313, 345, 346, 399
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	45, 407
MaeI	CTAG	2 cut(s)	269, 421
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	173, 284, 296, 382
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	38, 54, 107, 202, 210, 255, 274, 328, 357
MseI	TTAA	2 cut(s)	168, 396
MslI	CAYNNNNRTG	2 cut(s)	129, 152
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	64, 191
NdeII	GATC	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	129, 152
SaqAI	TTAA	2 cut(s)	168, 396
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	49, 81, 221, 266, 280
SfaNI	GCATC	2 cut(s)	45, 407
SmiMI	CAYNNNNRTG	2 cut(s)	129, 152
Sse9I	AATT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	117
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	269, 421
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	168, 396
Tru9I	TTAA	2 cut(s)	168, 396
TscAI	CASTG	3 cut(s)	15, 156, 201
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	110, 156
TspRI	CASTG	3 cut(s)	15, 156, 201
VspI	ATTAAT	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	269, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.