Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011611.1

Orthogroup ID

OG0005742

Physical Location & Seq

Genomic Coordinates Reverse (-)

28008 .. 28409

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011611.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgaagctcaggctcataatcgagaagctacaaaagggcctctcgctcttagcaaccaaaggtcctcacgatgatcagcacgatgaattcgatgaagacttggacgtagcgaagatggtacccgaggatgtaaaggaaggacattttgcagtgtttgcagtgaagggtaaggagcccaagaggtttgtgattaagctagagtccttgaataaccctgcatttttgaaattactagagcaggccaaggaagaatatggttttcaacagaaaggtgctcttgaagttccatgcagacctgaggatttgcataagattctggagaacaggagggagaagagtaggaccagtgctacatgtaataatactaatagtaatatccctacccttatagaaggatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

133

Amino Acids

15.17

Weight (kDa)

6.1

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09870
fragaria_vesca	FvH4_6g16370 FvH4_6g16380
malus_domestica	MD04G1093700.v1.1 MD12G1113400.v1.1
prunus_persica	Prupe.6G232300_v2.0.a1
pyrus_communis	pycom04g08900
rosa_chinensis	RchiOBHm_Chr3g0470221 RchiOBHm_Chr3g0470231
rosa_laevigata	RLG00000024288 RLG00000024289
rosa_multiflora	Rmu_co8432023.1_g000001 Rmu_sc0008333.1_g000002 Rmu_sc0011611.1_g000007 Rmu_sc0022898.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411040 Rroxscaffold_6G00411060
rosa_rugosa	Rorug03G0107500
rosa_samantha	Rh3AG157100 Rh3AG157200 Rh3BG181200 Rh3BG181300 Rh3CG172100 Rh3CG172200 Rh3DG193500 Rh3DG193600
rosa_wichuraiana	Rw3G014950 Rw3G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	4 cut(s)	208, 226, 263, 281
AluBI	AGCT	3 cut(s)	7, 28, 196
AluI	AGCT	3 cut(s)	7, 28, 196
Alw21I	GWGCWC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	37, 240
ApoI	RAATTY	1 cut(s)	86
Asp718I	GGTACC	1 cut(s)	118
AspS9I	GGNCC	3 cut(s)	37, 62, 342
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	62, 342
AxyI	CCTNAGG	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	277
BccI	CCATC	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	3 cut(s)	197, 233, 400
BfuI	GTATCC	1 cut(s)	389
Bme18I	GGWCC	2 cut(s)	62, 342
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	37, 62, 342
BmiI	GGNNCC	2 cut(s)	120, 174
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	123, 243
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	123, 243
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	22, 288
BseNI	ACTGG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	39, 242
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	122
BsnI	GGCC	2 cut(s)	39, 242
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	177, 277
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	39, 242
BspCNI	CTCAG	2 cut(s)	21, 289
BspLI	GGNNCC	2 cut(s)	120, 174
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	123, 243
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	8, 49, 297
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	39, 242
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	2 cut(s)	156, 165
BtsIMutI	CAGTG	3 cut(s)	156, 165, 352
Cac8I	GCNNGC	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	37, 62, 342
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	288, 354
CviJI	RGCY	7 cut(s)	7, 13, 28, 39, 175, 196, 242
CviKI_1	RGCY	7 cut(s)	7, 13, 28, 39, 175, 196, 242
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	8, 49, 297
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	62, 342
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	2 cut(s)	37, 62
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	291, 357
FaiI	YATR	6 cut(s)	17, 255, 289, 309, 355, 389
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	287, 353
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	197, 233, 400
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	39, 242
Hin1II	CATG	2 cut(s)	291, 357
HinfI	GANTC	2 cut(s)	200, 313
Hpy188III	TCNNGA	4 cut(s)	22, 68, 278, 317
HpyAV	CCTTC	3 cut(s)	131, 157, 386
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	149, 158, 218, 291, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	8, 49, 297
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	291, 357
KpnI	GGTACC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	224, 228, 302, 309, 310, 358
MaeI	CTAG	3 cut(s)	197, 233, 400
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	107, 124, 260, 346
MhlI	GDGCHC	2 cut(s)	177, 277
MluCI	AATT	2 cut(s)	86, 227
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	6 cut(s)	50, 75, 118, 174, 292, 321
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	291, 357
NlaIV	GGNNCC	2 cut(s)	120, 174
NspI	RCATGY	1 cut(s)	357
PciI	ACATGT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	62
PscI	ACATGT	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	120, 174
PspPI	GGNCC	3 cut(s)	37, 62, 342
PspPPI	RGGWCCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	3 cut(s)	37, 62, 342
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	177, 277
SetI	ASST	8 cut(s)	9, 30, 64, 108, 185, 198, 274, 298
SinI	GGWCC	2 cut(s)	62, 342
Sse9I	AATT	2 cut(s)	86, 227
SspMI	CTAG	3 cut(s)	197, 233, 400
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	21, 90
TasI	AATT	2 cut(s)	86, 227
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	156, 165, 352
TspDTI	ATGAA	3 cut(s)	17, 99, 108
TspRI	CASTG	3 cut(s)	156, 165, 352
VpaK11BI	GGWCC	2 cut(s)	62, 342
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	3 cut(s)	197, 233, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.