FvH4_6g16370

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005742
Physical Location & Seq
Reverse (-)
10288922 .. 10289224
303 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16370.t1

Sequence Viewer

Length: 303 bp
ATGAAAAAACTGGAGGTAGCAGCAGTTGTACCAGAAGATGTAAAGGAAGGACATTTTGCAGTGTTTGCAGTGGTGGGTAAGGAGGCAACGAGGTTTGTGACTAAGCTAGAGTCCTTGAATGACCCTGCACTAATGAATTTGCTAGAGAAGGCCAAGGAAGAATATGGGTTTCAACAGAAAGGTGCTCTTGAAGTCCATTGCCGGCCTGAGGAATTGCATTTGATTCTTGAAAAGGGCAGGATCGAGCAAATTAGATTTGATGCTAAAAGCAATGAAAATATCCTAATTGCCGTAGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

5.4

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 70 3.7e-13 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 118, 173, 191, 230
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 187
AlwI GGATC 1 cut(s) 248
AoxI GGCC 2 cut(s) 150, 203
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 275
BfaI CTAG 2 cut(s) 107, 143
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 2 cut(s) 196, 277
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 2 cut(s) 196, 277
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 2 cut(s) 152, 205
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 2 cut(s) 152, 205
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 240
BspANI GGCC 2 cut(s) 152, 205
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 196, 277
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 102, 207
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 152, 205
BtsI GCAGTG 2 cut(s) 66, 75
BtsIMutI CAGTG 2 cut(s) 66, 75
Cac8I GCNNGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 201
Csp6I GTAC 1 cut(s) 29
CviJI RGCY 3 cut(s) 106, 152, 205
CviKI_1 RGCY 3 cut(s) 106, 152, 205
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 102, 207
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 153
Eco81I CCTNAGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 1 cut(s) 165
FalI AAGNNNNNCTT 2 cut(s) 171, 203
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 107, 143
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 2 cut(s) 152, 205
HapII CCGG 1 cut(s) 202
HinfI GANTC 2 cut(s) 110, 223
HpaII CCGG 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 188, 227
HpyAV CCTTC 3 cut(s) 41, 142, 290
HpyCH4V TGCA 4 cut(s) 59, 68, 128, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 102, 207
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 5 cut(s) 45, 138, 215, 219, 223
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 107, 143
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 47, 170
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 4 cut(s) 136, 212, 249, 285
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 4 cut(s) 7, 76, 84, 202
MroNI GCCGGC 1 cut(s) 201
MspI CCGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 65
NaeI GCCGGC 1 cut(s) 203
NdeII GATC 1 cut(s) 240
NgoMIV GCCGGC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 18, 95, 108, 184
SfaNI GCATC 1 cut(s) 250
Sse9I AATT 4 cut(s) 136, 212, 249, 285
SspMI CTAG 2 cut(s) 107, 143
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 1 cut(s) 243
TasI AATT 4 cut(s) 136, 212, 249, 285
TfiI GAWTC 1 cut(s) 223
TscAI CASTG 2 cut(s) 66, 75
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 17, 149, 288
TspRI CASTG 2 cut(s) 66, 75
XapI RAATTY 1 cut(s) 136
XspI CTAG 2 cut(s) 107, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.