Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022898.1

Orthogroup ID

OG0005742

Physical Location & Seq

Genomic Coordinates Forward (+)

3702 .. 5974

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022898.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgtgtccacaacagtttccccagaccaagaacatgaagaaagcagaagacagtagcttaatgaagctcaggctcataatcggcaagctacaaaaggggctctcactgctaactgcaagaggccctcctgatcatcgttgcagaggctgtgatgaaaaactggaggtagcagcaattgtaccagaagatgtcaaggaaggacattttgcagtgtttgcagttgtgggtaaggagacaacgaggtttgtgactaagctagagtccttgaatgaccctgcacttatggaattgctagagcaagccaaggacgagtatgggttccaacagaaaggtgctcttgaagttcattgcaggcctgaggaattgcattcaattcttgaaaactgcaggatggagcaaagtagatttgatgctgcatctaacgataattttcttactgccctggaaggtcaacatactcgagcacatcgccagagcaattcactggcgctgctttatctcgagccgttgcttgttcagatcgaagtgacccaacgctcactacaacatcgaatcgagcgaggagaagccttcgtcggcattgaagtcggcgtcgacaacggaatcgaacagagaagaggaattgaggagaagcctccggtggccgcggcggcatgtttgtcgttgaagcggaaattggacaagtatggcaaggagtccggatatgacttcattcgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

6.41

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09870
fragaria_vesca	FvH4_6g16370 FvH4_6g16380
malus_domestica	MD04G1093700.v1.1 MD12G1113400.v1.1
prunus_persica	Prupe.6G232300_v2.0.a1
pyrus_communis	pycom04g08900
rosa_chinensis	RchiOBHm_Chr3g0470221 RchiOBHm_Chr3g0470231
rosa_laevigata	RLG00000024288 RLG00000024289
rosa_multiflora	Rmu_co8432023.1_g000001 Rmu_sc0008333.1_g000002 Rmu_sc0011611.1_g000007 Rmu_sc0022898.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411040 Rroxscaffold_6G00411060
rosa_rugosa	Rorug03G0107500
rosa_samantha	Rh3AG157100 Rh3AG157200 Rh3BG181200 Rh3BG181300 Rh3CG172100 Rh3CG172200 Rh3DG193500 Rh3DG193600
rosa_wichuraiana	Rw3G014950 Rw3G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	594
AccII	CGCG	1 cut(s)	647
AccIII	TCCGGA	1 cut(s)	698
AciI	CCGC	4 cut(s)	645, 647, 650, 670
AcoI	YGGCCR	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	591
AfaI	GTAC	1 cut(s)	180
AgsI	TTSAA	6 cut(s)	268, 341, 372, 380, 584, 667
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	4 cut(s)	57, 67, 88, 256
AluI	AGCT	4 cut(s)	57, 67, 88, 256
Alw21I	GWGCWC	2 cut(s)	337, 466
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	147
Ama87I	CYCGRG	2 cut(s)	459, 500
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	3 cut(s)	121, 353, 642
ApeKI	GCWGC	3 cut(s)	170, 413, 490
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	122
AvaI	CYCGRG	2 cut(s)	459, 500
AxyI	CCTNAGG	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	337, 466
BbvI	GCAGC	3 cut(s)	182, 400, 477
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	490
BcgI	CGANNNNNNTGC	4 cut(s)	568, 602, 642, 676
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	257, 293
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	650
BisI	GCNGC	6 cut(s)	171, 414, 491, 645, 648, 651
BlsI	GCNGC	6 cut(s)	172, 415, 492, 646, 649, 652
Bme1390I	CCNGG	1 cut(s)	443
BmeT110I	CYCGRG	2 cut(s)	459, 500
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	400, 425
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	303, 441, 645
BsaWI	WCCGGW	2 cut(s)	637, 698
Bse1I	ACTGG	2 cut(s)	165, 489
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	303, 441, 645
BseGI	GGATG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	82, 348
BseNI	ACTGG	2 cut(s)	165, 489
BseRI	GAGGAG	2 cut(s)	576, 641
BseXI	GCAGC	3 cut(s)	182, 400, 477
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	123, 355, 644
BsiHKAI	GWGCWC	2 cut(s)	337, 466
BsiHKCI	CYCGRG	2 cut(s)	459, 500
BsiSI	CCGG	2 cut(s)	638, 699
BsmAI	GTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	123, 355, 644
BsoBI	CYCGRG	2 cut(s)	459, 500
Bsp1286I	GDGCHC	3 cut(s)	102, 337, 466
Bsp13I	TCCGGA	1 cut(s)	698
Bsp143I	GATC	2 cut(s)	130, 519
BspACI	CCGC	4 cut(s)	645, 647, 650, 670
BspANI	GGCC	3 cut(s)	123, 355, 644
BspCNI	CTCAG	2 cut(s)	81, 349
BspEI	TCCGGA	1 cut(s)	698
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	165, 489
BssECI	CCNNGG	3 cut(s)	303, 441, 645
BssMI	GATC	2 cut(s)	130, 519
BssNI	GRCGYC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	2 cut(s)	15, 53
Bst6I	CTCTTC	1 cut(s)	610
BstACI	GRCGYC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	86, 300, 353
BstDEI	CTNAG	3 cut(s)	68, 252, 357
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	647
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	133, 522
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	130, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 215, 650
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	3 cut(s)	182, 400, 477
BstV2I	GAAGAC	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	123, 355, 644
BtgI	CCRYGG	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	2 cut(s)	104, 216
BtsIMutI	CAGTG	3 cut(s)	104, 216, 482
Cac8I	GCNNGC	3 cut(s)	86, 300, 353
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	122
Cfr42I	CCGCGG	1 cut(s)	648
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	34, 654
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	68, 252, 357
DpnI	GATC	2 cut(s)	132, 521
DpnII	GATC	2 cut(s)	130, 519
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	459, 500
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	37, 657
FaiI	YATR	8 cut(s)	35, 77, 284, 315, 456, 655, 687, 705
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	33, 653
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	6 cut(s)	171, 414, 491, 645, 648, 651
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	6 cut(s)	171, 414, 491, 645, 648, 651
FspBI	CTAG	2 cut(s)	257, 293
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	6 cut(s)	171, 414, 491, 645, 648, 651
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	123, 355, 644
HapII	CCGG	2 cut(s)	638, 699
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	2 cut(s)	37, 657
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	2 cut(s)	452, 595
HindII	GTYRAC	2 cut(s)	452, 595
HinfI	GANTC	4 cut(s)	260, 552, 603, 695
HpaII	CCGG	2 cut(s)	638, 699
Hpy166II	GTNNAC	3 cut(s)	8, 452, 595
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	5 cut(s)	128, 338, 377, 500, 699
Hpy8I	GTNNAC	3 cut(s)	8, 452, 595
Hpy99I	CGWCG	2 cut(s)	578, 596
HpyAV	CCTTC	3 cut(s)	191, 440, 580
HpyCH4III	ACNGT	2 cut(s)	15, 53
HpyCH4V	TGCA	9 cut(s)	116, 141, 209, 218, 278, 351, 367, 387, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 215, 650
HpyF3I	CTNAG	3 cut(s)	68, 252, 357
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	2 cut(s)	37, 657
HspAI	GCGC	1 cut(s)	488
Kpn2I	TCCGGA	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	130, 519
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	182, 400, 477
LweI	GCATC	2 cut(s)	400, 425
MaeI	CTAG	2 cut(s)	257, 293
MaeIII	GTNAC	2 cut(s)	247, 526
MalI	GATC	2 cut(s)	132, 521
MboI	GATC	2 cut(s)	130, 519
MboII	GAAGA	4 cut(s)	49, 59, 197, 627
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	102, 337, 466
MluCI	AATT	8 cut(s)	174, 287, 362, 372, 427, 478, 621, 674
MlyI	GAGTC	2 cut(s)	269, 704
MmeI	TCCRAC	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	698
MseI	TTAA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	638, 699
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	106, 215, 650
NdeII	GATC	2 cut(s)	130, 519
NlaIII	CATG	2 cut(s)	37, 657
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	247, 526
NspI	RCATGY	1 cut(s)	657
PaeR7I	CTCGAG	2 cut(s)	459, 500
PceI	AGGCCT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	552, 603
PkrI	GCNGC	6 cut(s)	172, 415, 492, 646, 649, 652
PleI	GAGTC	2 cut(s)	268, 703
PpsI	GAGTC	2 cut(s)	268, 703
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SacII	CCGCGG	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	6 cut(s)	171, 414, 491, 645, 648, 651
Sau3AI	GATC	2 cut(s)	130, 519
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	269, 704
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	3 cut(s)	102, 337, 466
SetI	ASST	8 cut(s)	59, 69, 90, 168, 245, 258, 334, 451
SfaNI	GCATC	2 cut(s)	400, 425
SfcI	CTRYAG	1 cut(s)	385
Sfr274I	CTCGAG	2 cut(s)	459, 500
Sfr303I	CCGCGG	1 cut(s)	648
SgrBI	CCGCGG	1 cut(s)	648
SlaI	CTCGAG	2 cut(s)	459, 500
SmlI	CTYRAG	2 cut(s)	459, 500
SmoI	CTYRAG	2 cut(s)	459, 500
Sse9I	AATT	8 cut(s)	174, 287, 362, 372, 427, 478, 621, 674
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	4 cut(s)	645, 647, 650, 670
SspMI	CTAG	2 cut(s)	257, 293
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	15, 53
TaqI	TCGA	7 cut(s)	460, 501, 522, 550, 555, 594, 606
TasI	AATT	8 cut(s)	174, 287, 362, 372, 427, 478, 621, 674
TauI	GCSGC	3 cut(s)	647, 650, 653
TfiI	GAWTC	2 cut(s)	552, 603
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	3 cut(s)	111, 216, 489
TseFI	GTSAC	2 cut(s)	247, 526
TseI	GCWGC	3 cut(s)	170, 413, 490
Tsp45I	GTSAC	2 cut(s)	247, 526
TspDTI	ATGAA	5 cut(s)	50, 77, 168, 335, 700
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	3 cut(s)	111, 216, 489
XceI	RCATGY	1 cut(s)	657
XhoI	CTCGAG	2 cut(s)	459, 500
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	257, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.