FvH4_6g16380

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005742
Physical Location & Seq
Reverse (-)
10294663 .. 10295067
405 bp
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UTR
Exon/CDS
Intron
FvH4_6g16380.t1

Sequence Viewer

Length: 405 bp
ATGAAGCTCAGGCTCATGATCGAGAAGCTACAAAAGGGCCTTTCGCTCTTAGCAACCAAAATCCCTCATGATGAACATGACGATGAATTCGACGAAGACGTGGAGGTAGCCAAGACGATACCCGAGGATGTAAAAGAAGGACATTTTGCAGTGTTTGCAGTGAAGGGTAAGGAGCCAAAGAGGTTTGTGGTTAAGCTAGAGTCATTGAATAACCCTGCATTTTTGAAATTACTAGAGCAGGCCAAGGAAGAATATGGTTTCCATCAGAAAGGGGCTCTTGAAGTTCCATGCAGACCTGAGGATTTGCATAAGATTCTGGGAAACAGGAGGGAGAAGAGTATGACCAGTGCTACTTGTAATAATACTAATAGTAAGAATACTCTTAATCTCATAGAAGGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

15.28

Weight (kDa)

6.22

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 36 - 106 4e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 86
AgsI TTSAA 3 cut(s) 208, 226, 281
AjiI CACGTC 1 cut(s) 100
AluBI AGCT 3 cut(s) 7, 28, 196
AluI AGCT 3 cut(s) 7, 28, 196
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 37, 240
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 297
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 1 cut(s) 270
BciVI GTATCC 1 cut(s) 392
BfaI CTAG 3 cut(s) 197, 233, 403
BfuI GTATCC 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 123, 243
Bse1I ACTGG 1 cut(s) 345
Bse21I CCTNAGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 123, 243
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 22, 288
BseNI ACTGG 1 cut(s) 345
BshFI GGCC 2 cut(s) 39, 242
BsiHKCI CYCGRG 1 cut(s) 122
BsnI GGCC 2 cut(s) 39, 242
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 18
BspANI GGCC 2 cut(s) 39, 242
BspCNI CTCAG 2 cut(s) 21, 289
BspHI TCATGA 2 cut(s) 15, 67
BspLI GGNNCC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 123, 243
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 8, 49, 297
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 39, 242
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 2 cut(s) 156, 165
BtsIMutI CAGTG 3 cut(s) 156, 165, 352
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 2 cut(s) 15, 67
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 4 cut(s) 16, 68, 77, 288
CviJI RGCY 9 cut(s) 7, 13, 28, 39, 110, 175, 196, 242, 275
CviKI_1 RGCY 9 cut(s) 7, 13, 28, 39, 110, 175, 196, 242, 275
DdeI CTNAG 3 cut(s) 8, 49, 297
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 277
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 19, 71, 80, 291
FaiI YATR 8 cut(s) 17, 69, 78, 255, 289, 309, 341, 392
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 15, 67, 76, 287
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 277
FspBI CTAG 3 cut(s) 197, 233, 403
HaeIII GGCC 2 cut(s) 39, 242
Hin1II CATG 4 cut(s) 19, 71, 80, 291
HinfI GANTC 2 cut(s) 200, 313
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 4 cut(s) 16, 22, 68, 278
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 131, 157, 389
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 5 cut(s) 149, 158, 218, 291, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 8, 49, 297
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 4 cut(s) 19, 71, 80, 291
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 224, 228, 302, 309, 310, 358
MaeI CTAG 3 cut(s) 197, 233, 403
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 107, 260, 346
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 86, 227
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 6 cut(s) 75, 97, 118, 174, 292, 321
MseI TTAA 2 cut(s) 192, 384
MslI CAYNNNNRTG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 18
NlaIII CATG 4 cut(s) 19, 71, 80, 291
NlaIV GGNNCC 1 cut(s) 174
PagI TCATGA 2 cut(s) 15, 67
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 96
PfeI GAWTC 1 cut(s) 313
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 192, 384
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 277
SetI ASST 7 cut(s) 9, 30, 102, 108, 185, 198, 298
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 2 cut(s) 86, 227
SspMI CTAG 3 cut(s) 197, 233, 403
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 21, 90
TasI AATT 2 cut(s) 86, 227
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 192, 384
Tru9I TTAA 2 cut(s) 192, 384
TscAI CASTG 3 cut(s) 156, 165, 352
TspDTI ATGAA 3 cut(s) 17, 87, 99
TspRI CASTG 3 cut(s) 156, 165, 352
XapI RAATTY 1 cut(s) 86
XspI CTAG 3 cut(s) 197, 233, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.